PDB Chemical Component PY8

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PY8

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
BR1	C1	1.904	1.888
C1	C2	1.387	1.381
C1	C6	1.390	1.381
C2	N3	1.320	1.352
C2	H2	1.103	1.085
N3	C4	1.336	1.348
C4	N5	1.341	1.351
C4	N21	1.333	1.410
N5	C6	1.343	1.351
C6	N7	1.336	1.392
N7	C8	1.476	1.458
N7	H7	1.020	1.014
C8	C9	1.535	1.534
C8	H8C1	1.115	1.097
C8	H8C2	1.115	1.095
C9	C10	1.530	1.530
C9	H9C1	1.115	1.098
C9	H9C2	1.115	1.094
C10	N13	1.474	1.477
C10	H101	1.115	1.095
C10	H102	1.115	1.095
N13	S14	1.666	1.701
N13	H13	1.020	1.027
S14	O14	1.508	1.451
S14	O15	1.496	1.450
S14	C15	1.727	1.769
C15	C20	1.392	1.396
C15	C16	1.393	1.392
C20	C19	1.393	1.404
C20	H20	1.103	1.085
C16	C17	1.388	1.394
C16	H16	1.103	1.085
C17	C18	1.394	1.399
C17	H17	1.103	1.086
C18	C19	1.404	1.404
C18	H18	1.103	1.088
C19	N21	1.345	1.412
N21	H21	1.020	1.014

Bond Angles for PY8

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
BR1	C1	C2	120.3	119.8
BR1	C1	C6	121.5	123.6
C2	C1	C6	118.2	116.6
C1	C2	N3	120.4	124.3
C1	C2	H2	122.3	120.6
C1	C6	N5	118.5	119.7
C1	C6	N7	121.4	120.2
N3	C2	H2	117.4	115.2
C2	N3	C4	121.2	116.4
N3	C4	N5	119.8	122.2
N3	C4	N21	118.4	118.6
N5	C4	N21	121.8	119.0
C4	N5	C6	121.9	120.8
C4	N21	C19	128.1	128.4
C4	N21	H21	105.7	114.5
N5	C6	N7	120.1	120.1
C6	N7	C8	122.8	120.7
C6	N7	H7	107.5	118.4
C8	N7	H7	107.5	118.9
N7	C8	C9	111.3	112.5
N7	C8	H8C1	111.6	108.2
N7	C8	H8C2	111.5	108.9
C9	C8	H8C1	111.5	108.8
C9	C8	H8C2	111.5	111.7
C8	C9	C10	109.9	114.1
C8	C9	H9C1	112.1	108.8
C8	C9	H9C2	112.0	111.2
H8C1	C8	H8C2	98.8	106.3
C10	C9	H9C1	112.0	108.7
C10	C9	H9C2	112.1	108.2
C9	C10	N13	109.6	111.5
C9	C10	H101	112.2	110.2
C9	C10	H102	112.2	109.2
H9C1	C9	H9C2	98.4	105.5
N13	C10	H101	112.2	108.0
N13	C10	H102	112.2	110.6
C10	N13	S14	116.0	123.1
C10	N13	H13	109.8	116.9
H101	C10	H102	98.2	107.4
S14	N13	H13	109.8	119.4
N13	S14	O14	107.6	108.9
N13	S14	O15	111.7	108.8
N13	S14	C15	111.0	104.0
O14	S14	O15	110.1	120.9
O14	S14	C15	109.2	107.6
O15	S14	C15	107.2	105.4
S14	C15	C20	119.8	119.6
S14	C15	C16	119.2	119.5
C20	C15	C16	121.0	120.8
C15	C20	C19	119.8	120.7
C15	C20	H20	120.1	119.2
C15	C16	C17	120.0	119.0
C15	C16	H16	120.2	121.7
C19	C20	H20	120.1	120.1
C20	C19	C18	118.6	118.0
C20	C19	N21	122.6	122.8
C17	C16	H16	119.9	119.3
C16	C17	C18	118.9	120.4
C16	C17	H17	120.3	119.9
C18	C17	H17	120.8	119.7
C17	C18	C19	121.8	121.0
C17	C18	H18	118.8	118.8
C19	C18	H18	119.5	120.2
C18	C19	N21	118.8	118.9
C19	N21	H21	105.7	116.2

Torsion Angles for PY8

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	BR1	C6	180.2	180.3
BR1	C1	C2	N3	179.8	180.7
BR1	C1	C2	H2	359.8	0.2
BR1	C1	C6	N5	179.6	181.2
BR1	C1	C6	N7	0.9	358.9
BR1	C1	C2	C6	179.8	179.8
C2	C1	C6	N5	359.4	1.0
C2	C1	C6	N7	180.7	178.6
N3	C2	C1	H2	180.0	180.6
C1	C2	N3	C4	0.2	359.3
BR1	C1	C6	C2	180.2	180.3
C6	C1	C2	N3	360.0	1.0
C6	C1	C2	H2	180.0	180.4
C4	N5	C6	C1	1.0	356.8
N5	C6	C1	N7	178.8	182.4
C1	C6	N7	C8	233.6	192.9
C1	C6	N7	H7	108.3	29.1
N3	C2	C1	C6	360.0	1.0
C1	C2	N3	H2	180.0	179.5
C2	N3	C4	N5	0.2	358.4
C2	N3	C4	N21	180.1	173.8
H2	C2	C1	C6	180.0	180.4
C1	C2	H2	N3	180.0	180.5
H2	C2	N3	C4	180.2	179.9
C4	N3	C2	H2	180.2	179.9
N5	C4	N3	N21	180.2	184.6
N3	C4	N5	C6	359.2	3.6
N3	C4	N21	C19	177.5	187.0
N3	C4	N21	H21	52.2	355.3
C1	C6	N5	C4	1.0	356.8
N3	C4	N5	N21	179.8	175.4
N5	C4	N21	C19	357.3	2.5
N5	C4	N21	H21	232.0	170.9
C4	N5	C6	N7	179.8	179.2
N3	C4	N21	N5	180.2	184.4
N21	C4	N5	C6	179.3	188.2
C20	C19	N21	C4	326.3	328.8
C18	C19	N21	C4	148.1	142.4
C19	N21	C4	H21	125.3	191.7
C1	C6	N5	N7	181.2	177.6
C6	N5	C4	N21	179.3	188.2
N5	C6	N7	C8	54.8	10.5
N5	C6	N7	H7	289.6	206.7
C1	C6	N7	N5	178.8	182.4
C8	N7	C6	H7	125.2	163.8
C6	N7	C8	C9	274.1	286.9
C6	N7	C8	H8C1	148.9	166.5
C6	N7	C8	H8C2	39.4	51.3
C6	N7	C8	H7	234.8	196.3
C9	C8	N7	H8C1	125.3	120.3
C9	C8	N7	H8C2	234.7	235.5
N7	C8	C9	C10	122.1	173.7
N7	C8	C9	H9C1	356.9	295.3
N7	C8	C9	H9C2	247.4	51.0
H8C1	C8	N7	H8C2	109.5	115.2
C6	N7	H7	C8	134.0	164.1
H7	N7	C8	C9	39.4	90.6
H7	N7	C8	H8C1	274.1	330.3
H7	N7	C8	H8C2	164.6	215.1
C9	C8	N7	H7	39.4	90.6
N7	C8	C9	H8C1	234.7	240.0
N7	C8	C9	H8C2	125.3	122.9
H8C1	C8	C9	H8C2	250.5	242.9
C10	C9	C8	H9C1	125.2	238.5
C10	C9	C8	H9C2	234.7	122.7
C8	C9	C10	N13	176.4	304.0
C8	C9	C10	H101	51.2	63.8
C8	C9	C10	H102	301.7	181.5
H9C1	C9	C8	H9C2	109.5	244.3
H8C1	C8	N7	H7	274.1	330.3
N7	C8	H8C1	C9	125.1	122.6
N7	C8	H8C1	H8C2	242.5	243.1
C9	C8	H8C1	H8C2	117.4	120.5
H8C1	C8	C9	C10	247.4	293.7
H8C1	C8	C9	H9C1	122.1	55.2
H8C1	C8	C9	H9C2	12.6	170.9
H8C2	C8	N7	H7	164.6	215.1
N7	C8	H8C2	C9	234.9	235.0
N7	C8	H8C2	H8C1	117.5	116.4
C9	C8	H8C2	H8C1	242.6	241.4
H8C2	C8	C9	C10	356.8	50.8
H8C2	C8	C9	H9C1	231.6	172.3
H8C2	C8	C9	H9C2	122.1	288.1
C10	C9	C8	H8C1	247.4	293.7
C10	C9	C8	H8C2	356.8	50.8
C8	C9	C10	H9C1	234.7	121.6
C8	C9	C10	H9C2	125.3	235.6
H9C1	C9	C10	H9C2	250.5	114.1
N13	C10	C9	H101	125.3	240.1
N13	C10	C9	H102	234.7	122.5
C9	C10	N13	S14	140.3	241.9
C9	C10	N13	H13	15.0	71.1
H101	C10	C9	H102	109.4	242.3
H9C1	C9	C8	H8C1	122.1	55.2
H9C1	C9	C8	H8C2	231.6	172.3
C8	C9	H9C1	C10	124.0	235.3
C8	C9	H9C1	H9C2	242.0	119.4
C10	C9	H9C1	H9C2	118.0	244.1
H9C1	C9	C10	N13	301.7	182.4
H9C1	C9	C10	H101	176.4	302.3
H9C1	C9	C10	H102	67.0	59.9
H9C2	C9	C8	H8C1	12.6	170.9
H9C2	C9	C8	H8C2	122.1	288.1
C8	C9	H9C2	C10	235.9	126.0
C8	C9	H9C2	H9C1	118.0	242.2
C10	C9	H9C2	H9C1	242.0	116.2
H9C2	C9	C10	N13	51.2	68.3
H9C2	C9	C10	H101	285.9	188.2
H9C2	C9	C10	H102	176.5	305.9
N13	C10	C9	H9C1	301.7	182.4
N13	C10	C9	H9C2	51.2	68.3
C9	C10	N13	H101	234.7	121.1
C9	C10	N13	H102	125.3	238.3
H101	C10	N13	H102	250.6	117.2
S14	N13	C10	H13	125.3	170.8
C10	N13	S14	O14	179.8	323.9
C10	N13	S14	O15	58.8	190.4
C10	N13	S14	C15	299.1	78.5
H101	C10	C9	H9C1	176.4	302.3
H101	C10	C9	H9C2	285.9	188.2
C9	C10	H101	N13	123.8	238.0
C9	C10	H101	H102	241.9	118.8
N13	C10	H101	H102	118.1	240.8
H101	C10	N13	S14	265.5	120.8
H101	C10	N13	H13	140.3	309.9
H102	C10	C9	H9C1	67.0	59.9
H102	C10	C9	H9C2	176.5	305.9
C9	C10	H102	N13	236.1	123.1
C9	C10	H102	H101	118.1	240.6
N13	C10	H102	H101	241.9	117.5
H102	C10	N13	S14	15.0	3.6
H102	C10	N13	H13	249.7	192.8
S14	N13	C10	H101	265.5	120.8
S14	N13	C10	H102	15.0	3.6
C10	N13	S14	H13	234.7	189.4
O14	S14	N13	O15	121.0	133.6
O14	S14	N13	C15	240.6	245.5
O15	S14	N13	C15	119.6	111.9
N13	S14	C15	C20	46.1	36.8
N13	S14	C15	C16	225.4	216.2
H13	N13	C10	H101	140.3	309.9
H13	N13	C10	H102	249.7	192.8
C10	N13	H13	S14	128.8	171.2
H13	N13	S14	O14	305.0	134.5
H13	N13	S14	O15	184.0	0.9
H13	N13	S14	C15	64.4	249.1
O14	S14	N13	H13	305.0	134.5
N13	S14	O14	O15	238.1	233.0
N13	S14	O14	C15	120.6	112.1
O15	S14	O14	C15	242.5	239.1
O14	S14	C15	C20	164.5	152.3
O14	S14	C15	C16	343.9	331.6
O15	S14	N13	H13	184.0	0.9
N13	S14	O15	O14	119.5	127.0
N13	S14	O15	C15	238.2	249.1
O14	S14	O15	C15	118.7	122.0
O15	S14	C15	C20	283.8	282.5
O15	S14	C15	C16	103.2	101.8
C15	S14	N13	H13	64.4	249.1
N13	S14	C15	O14	241.5	244.6
N13	S14	C15	O15	122.2	114.4
O14	S14	C15	O15	240.7	229.8
C20	C15	S14	C16	180.7	180.7
S14	C15	C20	C19	180.4	181.8
S14	C15	C20	H20	0.4	2.0
S14	C15	C16	C17	180.1	180.6
S14	C15	C16	H16	0.1	359.8
S14	C15	C20	C16	179.3	179.3
C20	C15	C16	C17	359.4	359.9
C20	C15	C16	H16	179.4	179.1
C19	C20	C15	H20	180.0	179.8
C15	C20	C19	C18	358.6	356.8
C15	C20	C19	N21	180.4	170.4
S14	C15	C16	C20	180.7	180.7
C16	C15	C20	C19	1.1	2.4
C16	C15	C20	H20	181.1	182.7
C17	C16	C15	H16	180.0	180.8
C15	C16	C17	C18	0.5	358.6
C15	C16	C17	H17	180.5	179.8
C4	N21	C19	C20	326.3	328.8
C19	C20	C15	C16	1.1	2.4
C15	C20	C19	H20	180.0	180.2
C17	C18	C19	C20	1.4	1.7
C20	C19	C18	H18	181.4	179.6
C18	C19	C20	N21	178.2	186.3
C20	C19	N21	H21	91.6	160.7
H20	C20	C15	C16	181.1	182.7
C15	C20	H20	C19	180.0	179.8
H20	C20	C19	C18	178.6	176.6
H20	C20	C19	N21	0.3	350.2
C15	C16	C17	H16	180.0	179.2
C18	C17	C16	H17	180.0	178.8
C16	C17	C18	C19	359.1	0.6
C16	C17	C18	H18	179.1	182.6
C15	C16	H16	C17	180.0	180.8
H16	C16	C17	C18	180.5	179.4
H16	C16	C17	H17	0.5	0.6
C20	C19	C18	C17	1.4	1.7
C18	C17	C16	H16	180.5	179.4
C16	C17	C18	H17	180.0	181.2
C19	C18	C17	H18	180.0	178.0
C17	C18	C19	N21	179.7	187.8
H17	C17	C16	H16	0.5	0.6
C16	C17	H17	C18	180.0	178.8
H17	C17	C18	C19	179.1	179.4
H17	C17	C18	H18	359.1	1.4
C4	N21	C19	C18	148.1	142.4
C18	C19	C20	H20	178.6	176.6
C20	C19	C18	N21	181.7	173.9
C19	C18	C17	H17	179.1	179.4
C17	C18	C19	H18	180.0	182.1
C18	C19	N21	H21	273.4	334.3
H18	C18	C17	H17	359.1	1.4
C17	C18	H18	C19	180.0	178.0
H18	C18	C19	N21	359.7	5.7
C4	N21	C19	H21	234.7	168.2
N21	C19	C20	H20	0.3	350.2
C20	C19	N21	C18	178.2	186.4
N21	C19	C18	H18	359.7	5.7
C4	N21	H21	C19	138.1	190.2