PDB Chemical Component PY1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PY1

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.499	1.464
C1	C5	1.409	1.367
C1	C8	1.541	1.478
C2	N3	1.377	1.316
C2	C10	1.483	1.481
N3	N4	1.391	1.398
N4	C5	1.392	1.346
N4	HN4	1.020	0.970
C5	H5	1.103	1.080
C8	C21	1.495	1.418
C8	C25	1.465	1.390
C10	N12	1.412	1.326
C10	C16	1.455	1.394
N12	C13	1.331	1.318
C13	C14	1.416	1.382
C13	H13	1.103	1.080
C14	C15	1.464	1.388
C14	H14	1.103	1.080
C15	C16	1.425	1.383
C15	H15	1.103	1.080
C16	H16	1.103	1.081
C21	C22	1.488	1.415
C21	C28	1.475	1.401
C22	N23	1.412	1.337
C22	C31	1.444	1.406
N23	C24	1.363	1.312
C24	C25	1.426	1.389
C24	H24	1.103	1.081
C25	H25	1.103	1.080
C28	C29	1.449	1.363
C28	H28	1.103	1.079
C29	C30	1.424	1.392
C29	H29	1.103	1.080
C30	C31	1.432	1.361
C30	H30	1.103	1.081
C31	H31	1.103	1.080

Bond Angles for PY1

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C5	105.3	106.6
C2	C1	C8	129.3	126.7
C1	C2	N3	109.3	107.0
C1	C2	C10	129.4	126.5
C5	C1	C8	125.4	126.7
C1	C5	N4	106.4	108.1
C1	C5	H5	127.3	126.0
C1	C8	C21	124.2	121.1
C1	C8	C25	116.8	121.1
N3	C2	C10	121.3	126.5
C2	N3	N4	105.4	108.8
C2	C10	N12	114.7	119.8
C2	C10	C16	125.5	119.7
N3	N4	C5	113.6	109.5
N3	N4	HN4	123.2	125.2
C5	N4	HN4	123.3	125.3
N4	C5	H5	126.3	126.0
C21	C8	C25	118.9	117.8
C8	C21	C22	116.8	118.9
C8	C21	C28	127.1	121.3
C8	C25	C24	120.7	119.6
C8	C25	H25	121.0	120.2
N12	C10	C16	119.8	120.5
C10	N12	C13	125.4	121.6
C10	C16	C15	115.4	119.1
C10	C16	H16	123.3	120.5
N12	C13	C14	118.1	120.9
N12	C13	H13	118.0	119.6
C14	C13	H13	123.9	119.5
C13	C14	C15	119.6	119.4
C13	C14	H14	118.6	120.4
C15	C14	H14	121.8	120.3
C14	C15	C16	121.7	118.5
C14	C15	H15	120.5	120.7
C16	C15	H15	117.8	120.7
C15	C16	H16	121.4	120.5
C22	C21	C28	116.2	119.8
C21	C22	N23	119.2	120.0
C21	C22	C31	120.5	119.1
C21	C28	C29	121.6	119.6
C21	C28	H28	120.1	120.2
N23	C22	C31	120.3	120.9
C22	N23	C24	124.6	121.8
C22	C31	C30	121.4	119.7
C22	C31	H31	119.7	120.2
N23	C24	C25	119.8	121.9
N23	C24	H24	117.8	119.1
C25	C24	H24	122.4	119.0
C24	C25	H25	118.3	120.2
C29	C28	H28	118.3	120.2
C28	C29	C30	120.4	120.8
C28	C29	H29	120.7	119.6
C30	C29	H29	118.9	119.6
C29	C30	C31	119.9	121.1
C29	C30	H30	119.8	119.5
C31	C30	H30	120.3	119.4
C30	C31	H31	118.9	120.2

Torsion Angles for PY1

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C5	C1	C2	C8	179.6	180.0
C2	C1	C5	N4	0.2	360.0
C2	C1	C5	H5	180.2	180.1
C2	C1	C8	C21	232.6	59.7
C2	C1	C8	C25	51.4	240.0
N3	C2	C1	C10	180.6	179.8
C1	C2	N3	N4	0.1	0.4
C1	C2	C10	N12	221.1	329.8
C1	C2	C10	C16	39.5	150.0
C2	C1	C5	C8	180.4	180.0
C5	C1	C2	N3	359.8	359.8
C5	C1	C2	C10	179.2	179.9
C5	C1	C8	C21	53.1	239.6
C5	C1	C8	C25	231.9	60.0
N3	N4	C5	C1	359.8	0.2
C1	C5	N4	HN4	179.7	180.1
N4	C5	C1	H5	180.0	179.9
C2	C1	C8	C5	179.5	180.1
C8	C1	C2	N3	180.2	179.7
C8	C1	C2	C10	359.6	359.9
C8	C1	C5	N4	179.9	180.0
C8	C1	C5	H5	359.9	0.1
C21	C8	C1	C25	181.2	179.6
C1	C8	C21	C22	179.9	179.7
C1	C8	C21	C28	358.1	0.7
C1	C8	C25	C24	180.3	180.0
C1	C8	C25	H25	0.3	359.9
N3	C2	C1	C5	359.8	359.8
N3	C2	C1	C8	180.2	179.7
C1	C2	N3	C10	179.4	180.2
N3	C2	C10	N12	40.4	150.0
N3	C2	C10	C16	218.8	330.2
C2	N3	N4	C5	0.1	359.6
C2	N3	N4	HN4	180.1	179.8
C10	C2	C1	C5	179.2	179.9
C10	C2	C1	C8	359.6	359.9
C1	C2	C10	N3	180.7	179.8
C10	C2	N3	N4	180.6	180.2
N12	C10	C2	C16	181.5	179.8
C2	C10	N12	C13	178.8	179.7
C2	C10	C16	C15	181.4	180.0
C2	C10	C16	H16	1.4	360.0
C1	C5	N4	N3	359.8	0.2
N4	N3	C2	C10	180.6	180.2
C5	N4	N3	HN4	180.0	179.8
N3	N4	C5	H5	179.8	180.2
N4	C5	C1	C8	179.9	180.0
C1	C5	N4	H5	180.0	180.1
N3	N4	C5	HN4	180.0	180.2
N3	N4	HN4	C5	180.0	179.8
HN4	N4	C5	H5	359.7	360.0
H5	C5	C1	C8	359.9	0.1
C1	C5	H5	N4	180.0	179.9
H5	C5	N4	HN4	359.7	360.0
C1	C8	C21	C25	178.8	180.4
C21	C8	C25	C24	359.2	0.3
C21	C8	C25	H25	179.2	180.3
C22	C21	C8	C28	181.8	178.9
C8	C21	C22	N23	358.5	0.7
C8	C21	C22	C31	179.8	180.4
C8	C21	C28	C29	180.8	179.6
C8	C21	C28	H28	0.8	359.3
C1	C8	C25	C21	181.1	179.6
C25	C8	C21	C22	1.1	359.3
C25	C8	C21	C28	179.4	180.4
N23	C24	C25	C8	0.8	360.0
C8	C25	C24	H24	180.8	180.0
C24	C25	C8	H25	180.0	180.1
C2	C10	N12	C16	178.6	180.2
N12	C10	C16	C15	359.8	0.2
N12	C10	C16	H16	179.8	180.2
C10	N12	C13	C14	359.8	0.5
C10	N12	C13	H13	179.8	180.3
C2	C10	C16	N12	181.6	179.8
C16	C10	N12	C13	0.3	359.5
C14	C15	C16	C10	0.1	360.0
C10	C16	C15	H15	180.0	180.0
C15	C16	C10	H16	180.0	180.1
C13	N12	C10	C16	0.3	359.5
C14	C13	N12	H13	180.0	180.2
N12	C13	C14	C15	0.1	359.7
N12	C13	C14	H14	180.1	179.8
N12	C13	C14	H13	180.0	179.8
C15	C14	C13	H14	180.0	179.9
C13	C14	C15	C16	360.0	0.1
C13	C14	C15	H15	180.0	180.1
N12	C13	H13	C14	180.0	180.2
H13	C13	C14	C15	180.0	179.9
H13	C13	C14	H14	0.1	0.0
C10	C16	C15	C14	0.1	360.0
C15	C14	C13	H13	180.0	179.9
C13	C14	C15	H14	180.0	180.1
C16	C15	C14	H15	180.0	180.0
C14	C15	C16	H16	180.0	180.0
H14	C14	C13	H13	0.1	0.0
C13	C14	H14	C15	180.0	179.9
H14	C14	C15	C16	180.0	180.0
H14	C14	C15	H15	0.0	359.9
C10	C16	C15	H16	180.0	179.9
C16	C15	C14	H14	180.0	180.0
C14	C15	C16	H15	180.0	180.0
H15	C15	C14	H14	0.0	359.9
C14	C15	H15	C16	180.0	180.0
H15	C15	C16	H16	0.0	0.0
C10	C16	H16	C15	180.0	180.1
H16	C16	C15	H15	0.0	0.0
C22	C21	C8	C25	1.1	359.3
C8	C21	C22	C28	178.4	181.0
C22	C21	C28	C29	359.0	0.7
C22	C21	C28	H28	179.0	180.3
N23	C22	C21	C31	178.7	180.4
C21	C22	N23	C24	1.6	359.6
C21	C22	C31	C30	358.6	0.3
C21	C22	C31	H31	178.6	180.4
C28	C21	C8	C25	179.4	180.4
C8	C21	C28	C22	181.8	178.9
C28	C21	C22	N23	180.1	179.7
C28	C21	C22	C31	1.4	359.3
C29	C28	C21	H28	180.0	180.4
C21	C28	C29	C30	0.5	359.6
C21	C28	C29	H29	180.5	179.7
N23	C22	C21	C28	180.1	179.7
C21	C22	N23	C31	181.3	179.6
N23	C22	C31	C30	179.9	179.9
N23	C22	C31	H31	359.9	0.0
C22	N23	C24	C25	358.8	0.0
C22	N23	C24	H24	178.8	180.0
C31	C22	C21	C28	1.4	359.3
C21	C22	C31	N23	178.7	180.4
C31	C22	N23	C24	180.3	180.0
C29	C30	C31	C22	0.8	0.0
C22	C31	C30	H30	180.8	180.0
C30	C31	C22	H31	180.0	179.9
C8	C25	C24	N23	0.8	360.0
C24	N23	C22	C31	180.3	180.0
C25	C24	N23	H24	180.0	180.0
N23	C24	C25	H25	180.8	180.1
C8	C25	C24	H25	180.0	179.9
N23	C24	C25	H24	180.0	180.0
N23	C24	H24	C25	180.0	180.0
H24	C24	C25	H25	0.9	0.1
C8	C25	H25	C24	180.0	180.1
H25	C25	C24	H24	0.9	0.1
C21	C28	C29	H28	180.0	179.6
C30	C29	C28	H29	180.0	179.9
C28	C29	C30	C31	359.6	360.0
C28	C29	C30	H30	179.6	180.0
C21	C28	H28	C29	180.0	180.4
H28	C28	C29	C30	180.5	180.0
H28	C28	C29	H29	0.5	0.1
C22	C31	C30	C29	0.8	0.0
C30	C29	C28	H28	180.5	180.0
C28	C29	C30	H29	180.0	180.1
C31	C30	C29	H30	180.0	180.0
C29	C30	C31	H31	180.8	180.0
H29	C29	C28	H28	0.5	0.1
C28	C29	H29	C30	180.0	179.9
H29	C29	C30	C31	179.6	179.9
H29	C29	C30	H30	359.6	360.0
C22	C31	C30	H31	180.0	180.1
C31	C30	C29	H29	179.6	179.9
C29	C30	C31	H30	180.0	180.0
H30	C30	C29	H29	359.6	360.0
C29	C30	H30	C31	180.0	180.0
H30	C30	C31	H31	0.8	360.0
C22	C31	H31	C30	180.0	179.9
H31	C31	C30	H30	0.8	360.0