PDB Chemical Component PXZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PXZ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C0	1.510	1.461
C1	C2	1.390	1.391
C1	C11	1.424	1.472
C0	O1	1.231	1.213
C0	H1	1.102	1.080
C2	N2	1.324	1.373
C2	C3	1.519	1.474
N2	HN21	1.020	0.970
N2	HN22	1.020	0.971
C3	O3	1.249	1.220
C3	C4	1.431	1.399
C4	C12	1.347	1.376
C4	C15	1.513	1.506
O5	C12	1.354	1.349
O5	C13	1.381	1.351
C6	C7	1.387	1.379
C6	C13	1.387	1.393
C6	C16	1.518	1.508
C7	C8	1.400	1.387
C7	H7	1.103	1.081
C8	C9	1.374	1.390
C8	H8	1.104	1.080
C9	C0'	1.513	1.468
C9	C14	1.407	1.421
C0'	O1'	1.234	1.213
C0'	H1'	1.103	1.080
N10	C11	1.325	1.318
N10	C14	1.378	1.339
C11	C12	1.474	1.470
C13	C14	1.398	1.408
C15	H151	1.115	1.090
C15	H152	1.114	1.089
C15	H153	1.115	1.091
C16	H161	1.114	1.090
C16	H162	1.116	1.089
C16	H163	1.115	1.090

Bond Angles for PXZ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C0	C1	C2	118.4	120.6
C0	C1	C11	122.1	120.6
C1	C0	O1	121.3	120.0
C1	C0	H1	129.6	120.0
C2	C1	C11	119.3	118.8
C1	C2	N2	125.7	120.1
C1	C2	C3	120.1	119.9
C1	C11	N10	121.0	120.8
C1	C11	C12	118.1	119.4
O1	C0	H1	109.1	120.0
N2	C2	C3	114.2	120.0
C2	N2	HN21	125.7	120.0
C2	N2	HN22	106.5	120.0
C2	C3	O3	117.8	119.5
C2	C3	C4	119.1	120.9
HN21	N2	HN22	106.4	120.0
O3	C3	C4	123.1	119.6
C3	C4	C12	118.1	120.9
C3	C4	C15	120.0	119.5
C12	C4	C15	121.9	119.6
C4	C12	O5	117.2	120.7
C4	C12	C11	124.6	120.1
C4	C15	H151	120.0	109.5
C4	C15	H152	108.4	109.5
C4	C15	H153	108.4	109.5
C12	O5	C13	120.3	119.3
O5	C12	C11	118.2	119.2
O5	C13	C6	116.3	119.8
O5	C13	C14	119.1	120.5
C7	C6	C13	116.4	120.5
C7	C6	C16	123.5	119.7
C6	C7	C8	120.7	120.8
C6	C7	H7	119.2	119.7
C13	C6	C16	120.0	119.8
C6	C13	C14	124.6	119.7
C6	C16	H161	123.5	109.4
C6	C16	H162	107.2	109.4
C6	C16	H163	107.2	109.5
C8	C7	H7	120.1	119.5
C7	C8	C9	121.7	120.2
C7	C8	H8	120.1	119.8
C9	C8	H8	118.2	119.9
C8	C9	C0'	117.8	120.2
C8	C9	C14	119.3	119.5
C0'	C9	C14	122.8	120.2
C9	C0'	O1'	119.3	120.0
C9	C0'	H1'	130.2	120.0
C9	C14	N10	121.0	119.8
C9	C14	C13	117.2	119.3
O1'	C0'	H1'	110.5	120.0
C11	N10	C14	119.0	120.3
N10	C11	C12	120.7	119.8
N10	C14	C13	121.7	120.9
H151	C15	H152	108.5	109.5
H151	C15	H153	108.4	109.4
H152	C15	H153	101.5	109.4
H161	C16	H162	107.2	109.5
H161	C16	H163	107.3	109.4
H162	C16	H163	102.5	109.6

Torsion Angles for PXZ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C0	C11	184.5	180.0
C0	C1	C2	N2	4.4	0.0
C0	C1	C2	C3	186.2	180.0
C0	C1	C11	N10	351.7	359.9
C0	C1	C11	C12	176.1	180.0
O1	C0	C1	H1	179.9	179.9
C0	C1	C2	C11	175.6	180.0
C2	C1	C0	O1	324.7	179.9
C2	C1	C0	H1	144.8	360.0
C2	C1	C11	N10	167.2	179.9
C2	C1	C11	C12	351.5	0.1
N2	C2	C1	C3	178.2	180.0
C1	C2	N2	HN21	179.9	179.9
C1	C2	N2	HN22	54.8	360.0
C1	C2	C3	O3	177.0	180.0
C1	C2	C3	C4	354.7	-0.0
C0	C1	C11	C2	184.6	180.0
C11	C1	C0	O1	140.2	360.0
C11	C1	C0	H1	320.3	180.0
C11	C1	C2	N2	188.7	180.0
C11	C1	C2	C3	10.6	360.0
C4	C12	C11	C1	0.8	359.9
O5	C12	C11	C1	182.0	180.0
C1	C11	N10	C14	186.2	180.0
N10	C11	C1	C12	175.6	179.9
O1	C0	C1	C2	324.7	179.9
O1	C0	C1	C11	140.2	360.0
C1	C0	O1	H1	180.1	180.1
H1	C0	C1	C2	144.8	360.0
H1	C0	C1	C11	320.3	180.0
C1	C0	H1	O1	179.9	179.9
N2	C2	C1	C11	188.7	180.0
C1	C2	N2	C3	181.7	180.0
N2	C2	C3	O3	358.6	360.0
N2	C2	C3	C4	176.3	180.0
HN21	N2	C2	HN22	125.1	180.0
C3	C2	C1	C11	10.6	360.0
C1	C2	C3	N2	178.4	180.0
C3	C2	N2	HN21	358.2	360.0
C3	C2	N2	HN22	233.0	180.0
O3	C3	C2	C4	182.3	180.0
C2	C3	C4	C12	357.8	360.0
C2	C3	C4	C15	179.6	180.0
HN21	N2	C2	C3	358.2	360.0
C2	N2	HN21	HN22	234.8	180.0
HN22	N2	C2	C3	233.0	180.0
C2	N2	HN22	HN21	136.2	180.0
C2	C3	O3	C4	177.6	180.0
O3	C3	C4	C12	175.3	180.0
O3	C3	C4	C15	357.2	-0.0
C2	C3	C4	O3	182.5	180.0
C12	C4	C3	C15	178.2	180.0
C3	C4	C12	O5	183.3	180.0
C3	C4	C12	C11	4.4	0.0
C3	C4	C15	H151	180.0	-0.0
C3	C4	C15	H152	305.3	120.1
C3	C4	C15	H153	54.7	240.0
C1	C11	C12	C4	0.8	359.9
C3	C4	C12	C15	181.9	180.0
C12	C4	C15	H151	1.9	180.0
C12	C4	C15	H152	127.2	300.1
C12	C4	C15	H153	236.7	60.0
C4	C12	O5	C13	171.3	179.7
O5	C12	C4	C11	178.8	179.9
N10	C11	C12	C4	185.1	180.0
C3	C4	C15	C12	178.1	180.0
C15	C4	C12	O5	1.4	360.0
C15	C4	C12	C11	182.5	180.0
H151	C15	C4	H152	234.7	239.9
H151	C15	C4	H153	125.2	120.0
H152	C15	C4	H153	250.5	240.0
C1	C11	C12	O5	182.0	180.0
O5	C12	C4	C15	1.4	360.0
C4	C12	O5	C11	181.1	180.1
C12	O5	C13	C6	187.1	179.8
C12	O5	C13	C14	5.5	0.6
N10	C11	C12	O5	6.3	0.1
C13	O5	C12	C11	350.2	359.6
C7	C6	C13	O5	178.6	180.3
O5	C13	C6	C16	1.2	0.5
C6	C13	O5	C14	181.6	179.2
C9	C14	C13	O5	182.1	179.7
N10	C14	C13	O5	2.9	359.5
O5	C13	C6	C7	178.6	180.3
C13	C6	C7	C16	182.7	180.2
C7	C6	C13	C14	0.3	359.5
C7	C6	C16	H161	180.1	90.0
C7	C6	C16	H162	305.3	209.9
C7	C6	C16	H163	54.7	330.0
C8	C7	C6	H7	180.0	180.0
C6	C7	C8	C9	2.3	-0.0
C6	C7	C8	H8	182.3	180.0
O5	C13	C6	C14	178.3	180.8
C7	C6	C13	C16	177.4	179.8
C13	C6	C7	C8	358.4	0.2
C13	C6	C7	H7	178.4	180.2
C13	C6	C16	H161	357.3	269.7
C13	C6	C16	H162	122.5	29.7
C13	C6	C16	H163	231.9	149.8
C9	C14	C13	C6	0.4	0.5
N10	C14	C13	C6	181.2	180.2
C7	C6	C16	C13	182.8	180.2
C16	C6	C7	C8	175.7	180.0
C16	C6	C7	H7	355.7	-0.0
C16	C6	C13	C14	182.9	179.8
H161	C16	C6	H162	234.8	240.1
H161	C16	C6	H163	125.4	119.9
H162	C16	C6	H163	250.6	239.9
C8	C7	C6	C13	358.4	0.2
C8	C7	C6	C16	175.7	180.0
C6	C7	C8	H7	180.0	180.0
C9	C8	C7	H8	179.9	180.0
C7	C8	C9	C0'	176.2	180.0
C7	C8	C9	C14	358.5	-0.0
H7	C7	C6	C13	178.4	180.2
H7	C7	C6	C16	355.7	360.0
C6	C7	H7	C8	180.0	180.0
H7	C7	C8	C9	182.2	180.0
H7	C7	C8	H8	2.3	-0.0
C9	C8	C7	H7	182.2	180.0
C7	C8	C9	H8	180.1	180.0
C0'	C9	C8	C14	177.7	180.0
C8	C9	C0'	O1'	298.9	0.1
C8	C9	C0'	H1'	118.8	180.0
C8	C9	C14	N10	179.4	180.0
C8	C9	C14	C13	0.2	359.8
H8	C8	C7	H7	2.3	-0.0
C7	C8	H8	C9	179.9	180.0
H8	C8	C9	C0'	356.2	-0.0
H8	C8	C9	C14	178.4	180.0
C0'	C9	C8	H8	356.2	-0.0
C8	C9	C0'	C14	182.4	180.0
C0'	C9	C14	N10	1.8	-0.0
C0'	C9	C14	C13	182.6	179.8
O1'	C0'	C9	H1'	180.0	180.1
O5	C13	C14	C9	182.1	179.7
C6	C13	C14	C9	0.4	0.5
C14	C9	C8	H8	178.4	180.0
C8	C9	C14	C0'	177.6	180.0
C14	C9	C0'	O1'	116.5	180.1
C14	C9	C0'	H1'	296.5	-0.0
C11	N10	C14	C9	174.4	180.1
N10	C14	C9	C13	179.2	180.2
O1'	C0'	C9	C14	116.5	180.1
C9	C0'	O1'	H1'	180.0	179.9
H1'	C0'	C9	C14	296.5	-0.0
C9	C0'	H1'	O1'	180.0	180.1
C1	C11	N10	C12	184.5	180.1
C4	C12	C11	N10	185.1	180.0
O5	C12	C11	N10	6.3	0.1
C9	C14	N10	C11	174.4	180.1
C11	N10	C14	C13	353.6	0.3
O5	C13	C14	N10	2.9	359.5
C6	C13	C14	N10	181.2	180.2
C9	C14	N10	C13	180.8	179.8
C14	N10	C11	C12	1.7	359.9
C1	C11	C12	N10	175.6	179.9
C11	C12	C4	C15	182.5	180.0
C4	C12	C11	O5	178.8	179.9
C11	C12	O5	C13	350.2	359.6
C12	C11	N10	C14	1.7	359.9
O5	C13	C14	C6	181.7	179.2
C14	C13	C6	C16	182.9	179.8
C9	C14	C13	N10	179.2	180.2
C4	C15	H151	H152	125.3	120.1
C4	C15	H151	H153	234.8	240.0
H152	C15	H151	H153	109.5	119.9
C4	C15	H152	H151	228.1	239.9
C4	C15	H152	H153	114.1	120.0
H151	C15	H152	H153	245.9	240.1
C4	C15	H153	H151	131.8	120.0
C4	C15	H153	H152	245.9	240.0
H151	C15	H153	H152	114.1	119.9
C6	C16	H161	H162	125.2	119.9
C6	C16	H161	H163	234.7	240.1
H162	C16	H161	H163	109.5	120.1
C6	C16	H162	H161	225.5	240.1
C6	C16	H162	H163	112.7	120.1
H161	C16	H162	H163	247.2	240.0
C6	C16	H163	H161	134.6	119.9
C6	C16	H163	H162	247.3	240.0
H161	C16	H163	H162	112.8	120.0