PDB Chemical Component PXP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PXP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.397	1.318
N1	C6	1.385	1.319
C2	C2A	1.525	1.507
C2	C3	1.390	1.385
C2A	H2A1	1.115	1.090
C2A	H2A2	1.116	1.090
C2A	H2A3	1.115	1.091
C3	O3	1.380	1.360
C3	C4	1.402	1.392
O3	HO3	0.950	0.966
C4	C4A	1.481	1.507
C4	C5	1.404	1.385
C4A	O4A	1.367	1.428
C4A	H4A1	1.114	1.089
C4A	H4A2	1.115	1.091
O4A	HOA4	0.950	0.967
C5	C6	1.401	1.382
C5	C5A	1.545	1.506
C6	H6	1.103	1.080
C5A	O4P	1.393	1.428
C5A	H5A1	1.115	1.090
C5A	H5A2	1.115	1.089
O4P	P	1.528	1.611
P	O1P	1.461	1.480
P	O2P	1.573	1.610
P	O3P	1.440	1.608
O2P	HOP2	0.951	0.967
O3P	HOP3	0.951	0.967

Bond Angles for PXP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	121.4	121.7
N1	C2	C2A	120.1	119.6
N1	C2	C3	119.3	120.7
N1	C6	C5	119.8	120.9
N1	C6	H6	119.5	119.5
C2A	C2	C3	120.6	119.7
C2	C2A	H2A1	120.1	109.5
C2	C2A	H2A2	108.4	109.5
C2	C2A	H2A3	108.3	109.5
C2	C3	O3	121.1	120.5
C2	C3	C4	119.7	119.1
H2A1	C2A	H2A2	108.5	109.5
H2A1	C2A	H2A3	108.5	109.4
H2A2	C2A	H2A3	101.5	109.4
O3	C3	C4	119.1	120.4
C3	O3	HO3	121.1	106.8
C3	C4	C4A	118.8	120.8
C3	C4	C5	120.8	118.4
C4A	C4	C5	120.4	120.8
C4	C4A	O4A	105.2	109.5
C4	C4A	H4A1	113.8	109.5
C4	C4A	H4A2	113.8	109.4
C4	C5	C6	118.9	119.2
C4	C5	C5A	123.4	120.4
O4A	C4A	H4A1	113.8	109.5
O4A	C4A	H4A2	113.8	109.4
C4A	O4A	HOA4	105.2	106.8
H4A1	C4A	H4A2	96.6	109.5
C6	C5	C5A	117.6	120.4
C5	C6	H6	120.7	119.6
C5	C5A	O4P	103.0	109.5
C5	C5A	H5A1	114.7	109.5
C5	C5A	H5A2	114.7	109.5
O4P	C5A	H5A1	114.7	109.4
O4P	C5A	H5A2	114.6	109.5
C5A	O4P	P	129.6	106.8
H5A1	C5A	H5A2	95.7	109.4
O4P	P	O1P	96.7	109.4
O4P	P	O2P	101.0	109.5
O4P	P	O3P	117.9	109.5
O1P	P	O2P	116.5	109.5
O1P	P	O3P	114.4	109.5
O2P	P	O3P	109.4	109.5
P	O2P	HOP2	101.0	106.8
P	O3P	HOP3	117.9	106.8

Torsion Angles for PXP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	C5	0.4	0.1
C2	N1	C6	H6	180.4	180.0
C2A	C2	N1	C3	180.8	179.7
N1	C2	C2A	H2A1	180.0	90.0
N1	C2	C2A	H2A2	305.3	210.0
N1	C2	C2A	H2A3	54.7	330.0
N1	C2	C3	O3	179.9	179.9
N1	C2	C3	C4	0.3	359.4
C6	N1	C2	C2A	180.4	179.9
C6	N1	C2	C3	359.6	0.3
C4	C5	C6	N1	359.8	359.9
N1	C6	C5	C5A	180.2	180.0
C5	C6	N1	H6	180.0	180.1
C2A	C2	N1	C6	180.4	179.9
N1	C2	C2A	C3	179.2	180.3
C2A	C2	C3	O3	359.0	0.3
C2A	C2	C3	C4	179.4	179.8
H2A1	C2A	C2	H2A2	234.7	239.9
H2A1	C2A	C2	H2A3	125.3	119.9
H2A2	C2A	C2	H2A3	250.6	240.0
C3	C2	N1	C6	359.6	0.3
N1	C2	C3	C2A	180.8	179.7
C3	C2	C2A	H2A1	0.8	269.6
C3	C2	C2A	H2A2	126.2	29.7
C3	C2	C2A	H2A3	235.5	149.7
O3	C3	C2	C4	179.6	180.5
C2	C3	O3	HO3	180.0	269.5
C2	C3	C4	C4A	180.1	180.3
C2	C3	C4	C5	359.9	0.5
H2A1	C2A	C2	C3	0.8	269.6
C2	C2A	H2A1	H2A2	125.3	120.1
C2	C2A	H2A1	H2A3	234.8	240.0
H2A2	C2A	H2A1	H2A3	109.5	119.9
H2A2	C2A	C2	C3	126.2	29.7
C2	C2A	H2A2	H2A1	228.1	239.9
C2	C2A	H2A2	H2A3	114.0	120.0
H2A1	C2A	H2A2	H2A3	245.8	240.1
H2A3	C2A	C2	C3	235.5	149.7
C2	C2A	H2A3	H2A1	131.9	120.0
C2	C2A	H2A3	H2A2	246.0	239.9
H2A1	C2A	H2A3	H2A2	114.2	120.0
C2	C3	O3	C4	180.4	179.5
O3	C3	C4	C4A	0.4	359.8
O3	C3	C4	C5	180.3	180.0
C2	C3	C4	O3	179.6	180.5
C4	C3	O3	HO3	359.7	90.0
C4A	C4	C3	C5	180.1	179.8
C3	C4	C4A	O4A	293.1	270.2
C3	C4	C4A	H4A1	58.4	30.2
C3	C4	C4A	H4A2	167.9	150.3
C3	C4	C5	C6	0.0	359.8
C3	C4	C5	C5A	179.5	179.7
HO3	O3	C3	C4	359.7	90.0
C3	C4	C4A	C5	179.9	180.2
C4A	C4	C5	C6	179.9	180.0
C4A	C4	C5	C5A	359.4	360.0
O4A	C4A	C4	H4A1	234.7	240.0
O4A	C4A	C4	H4A2	125.3	119.9
C4	C4A	O4A	HOA4	180.1	180.0
H4A1	C4A	C4	H4A2	250.5	239.9
N1	C6	C5	C4	359.8	359.9
C3	C4	C5	C4A	180.1	179.8
C5	C4	C4A	O4A	113.3	90.0
C5	C4	C4A	H4A1	238.5	210.0
C5	C4	C4A	H4A2	348.0	330.0
C6	C5	C4	C5A	180.5	180.0
C4	C5	C6	H6	179.8	180.0
C4	C5	C5A	O4P	232.6	180.0
C4	C5	C5A	H5A1	357.8	300.0
C4	C5	C5A	H5A2	107.3	60.0
O4A	C4A	C4	C5	113.3	90.0
C4	C4A	O4A	H4A1	125.3	120.0
C4	C4A	O4A	H4A2	234.8	240.1
H4A1	C4A	O4A	H4A2	109.5	120.0
H4A1	C4A	C4	C5	238.5	210.0
C4	C4A	H4A1	O4A	239.5	240.0
C4	C4A	H4A1	H4A2	119.7	120.0
O4A	C4A	H4A1	H4A2	240.2	240.0
H4A1	C4A	O4A	HOA4	54.8	60.0
H4A2	C4A	C4	C5	348.0	330.0
C4	C4A	H4A2	O4A	120.5	119.9
C4	C4A	H4A2	H4A1	240.3	239.9
O4A	C4A	H4A2	H4A1	119.8	120.0
H4A2	C4A	O4A	HOA4	305.3	299.9
HOA4	O4A	C4A	H4A1	54.8	60.0
HOA4	O4A	C4A	H4A2	305.3	299.9
N1	C6	C5	H6	180.0	179.9
C4	C5	C6	C5A	179.5	180.0
C6	C5	C5A	O4P	52.1	0.0
C6	C5	C5A	H5A1	177.4	120.0
C6	C5	C5A	H5A2	286.8	240.0
C4	C5	C5A	C6	180.5	180.0
C5A	C5	C6	H6	0.2	0.0
O4P	C5A	C5	H5A1	234.7	240.0
O4P	C5A	C5	H5A2	125.3	120.0
C5	C5A	O4P	P	183.7	180.0
H5A1	C5A	C5	H5A2	250.5	240.0
N1	C6	H6	C5	180.0	180.1
H6	C6	C5	C5A	0.2	0.0
C5	C5A	O4P	H5A1	125.3	120.0
C5	C5A	O4P	H5A2	234.7	240.0
H5A1	C5A	O4P	H5A2	109.4	120.0
C5A	O4P	P	O1P	89.0	60.0
C5A	O4P	P	O2P	330.3	180.0
C5A	O4P	P	O3P	211.2	300.0
C5	C5A	H5A1	O4P	241.1	240.0
C5	C5A	H5A1	H5A2	120.6	120.0
O4P	C5A	H5A1	H5A2	239.5	240.0
H5A1	C5A	O4P	P	58.4	60.0
C5	C5A	H5A2	O4P	118.9	120.0
C5	C5A	H5A2	H5A1	239.4	240.0
O4P	C5A	H5A2	H5A1	120.5	120.0
H5A2	C5A	O4P	P	309.0	300.0
P	O4P	C5A	H5A1	58.4	60.0
P	O4P	C5A	H5A2	309.0	300.0
O1P	P	O4P	O2P	118.7	240.0
O1P	P	O4P	O3P	237.8	120.0
O2P	P	O4P	O3P	119.1	240.0
O4P	P	O2P	HOP2	180.0	180.1
O4P	P	O3P	HOP3	180.0	300.0
O4P	P	O1P	O2P	254.1	120.0
O4P	P	O1P	O3P	124.8	240.0
O2P	P	O1P	O3P	230.6	120.0
O1P	P	O2P	HOP2	76.8	300.0
O1P	P	O3P	HOP3	292.6	180.0
O4P	P	O2P	O1P	103.2	240.0
O4P	P	O2P	O3P	235.0	120.0
O1P	P	O2P	O3P	131.8	240.0
O2P	P	O3P	HOP3	65.4	60.0
O4P	P	O3P	O1P	247.4	120.0
O4P	P	O3P	O2P	114.6	240.0
O1P	P	O3P	O2P	227.2	120.0
O3P	P	O2P	HOP2	305.0	60.0
HOP2	O2P	P	O3P	305.0	60.0