PDB Chemical Component PXG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PXG

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.438	1.318
N1	C6	1.401	1.318
C2	C2A	1.568	1.507
C2	C3	1.406	1.386
C2A	H2A1	1.115	1.089
C2A	H2A2	1.116	1.090
C2A	H2A3	1.114	1.090
C3	O3	1.306	1.359
C3	C4	1.528	1.392
O3	HO3	0.950	0.966
C5	C6	1.420	1.382
C5	C5A	1.557	1.505
C5	C4	1.466	1.385
C6	H6	1.103	1.080
C5A	OP4	1.425	1.428
C5A	H5A1	1.116	1.090
C5A	H5A2	1.116	1.090
OP4	P	1.623	1.610
P	OP1	1.572	1.610
P	OP2	1.511	1.611
P	OP3	1.393	1.478
OP1	HOP1	0.950	0.967
OP2	HOP2	0.950	0.967
C4	C4A	1.507	1.506
C4A	N9	1.506	1.465
C4A	H4A1	1.115	1.091
C4A	H4A2	1.116	1.090
C7	C8	1.474	1.478
C7	O2	1.406	1.347
C7	O8	1.237	1.214
C8	C9	1.361	1.395
C8	C13	1.495	1.396
O2	HO2	0.950	0.967
C9	C10	1.449	1.386
C9	H9	1.102	1.080
C10	C11	1.393	1.390
C10	N9	1.427	1.398
C11	C12	1.498	1.382
C11	H11	1.103	1.080
C12	C13	1.366	1.380
C12	H12	1.104	1.080
C13	H13	1.103	1.080
N9	HN9	1.019	0.969

Bond Angles for PXG

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	122.0	121.8
N1	C2	C2A	115.2	119.7
N1	C2	C3	120.1	120.6
N1	C6	C5	119.0	120.9
N1	C6	H6	119.9	119.6
C2A	C2	C3	124.5	119.7
C2	C2A	H2A1	115.2	109.5
C2	C2A	H2A2	110.1	109.4
C2	C2A	H2A3	110.1	109.5
C2	C3	O3	123.4	120.5
C2	C3	C4	120.2	119.1
H2A1	C2A	H2A2	110.1	109.5
H2A1	C2A	H2A3	110.2	109.5
H2A2	C2A	H2A3	100.1	109.5
O3	C3	C4	116.4	120.5
C3	O3	HO3	123.3	106.8
C3	C4	C5	115.1	118.4
C3	C4	C4A	123.7	120.8
C6	C5	C5A	117.9	120.4
C6	C5	C4	122.6	119.2
C5	C6	H6	121.1	119.5
C5A	C5	C4	118.8	120.4
C5	C5A	OP4	119.1	109.5
C5	C5A	H5A1	108.7	109.5
C5	C5A	H5A2	108.8	109.5
C5	C4	C4A	121.2	120.8
OP4	C5A	H5A1	108.8	109.5
OP4	C5A	H5A2	108.8	109.4
C5A	OP4	P	126.0	106.8
H5A1	C5A	H5A2	101.2	109.4
OP4	P	OP1	100.9	109.5
OP4	P	OP2	96.7	109.5
OP4	P	OP3	108.1	109.5
OP1	P	OP2	110.7	109.4
OP1	P	OP3	116.1	109.5
P	OP1	HOP1	101.0	106.8
OP2	P	OP3	120.3	109.4
P	OP2	HOP2	96.7	106.8
C4	C4A	N9	111.2	109.5
C4	C4A	H4A1	111.5	109.5
C4	C4A	H4A2	111.5	109.6
N9	C4A	H4A1	111.6	109.4
N9	C4A	H4A2	111.6	109.4
C4A	N9	C10	121.4	120.0
C4A	N9	HN9	107.9	120.0
H4A1	C4A	H4A2	98.8	109.5
C8	C7	O2	114.7	120.0
C8	C7	O8	126.1	120.0
C7	C8	C9	118.7	120.1
C7	C8	C13	121.8	120.1
O2	C7	O8	119.3	120.0
C7	O2	HO2	114.6	120.0
C9	C8	C13	119.4	119.8
C8	C9	C10	122.9	119.8
C8	C9	H9	115.3	120.2
C8	C13	C12	118.0	120.0
C8	C13	H13	125.3	120.0
C10	C9	H9	121.9	120.1
C9	C10	C11	119.3	120.0
C9	C10	N9	126.2	120.0
C11	C10	N9	114.4	120.0
C10	C11	C12	118.0	120.3
C10	C11	H11	117.6	119.9
C10	N9	HN9	108.0	120.0
C12	C11	H11	124.5	119.8
C11	C12	C13	122.4	120.2
C11	C12	H12	123.6	119.9
C13	C12	H12	114.1	119.9
C12	C13	H13	116.7	120.0

Torsion Angles for PXG

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	C5	349.5	360.0
C2	N1	C6	H6	169.5	180.0
C2A	C2	N1	C3	175.7	179.7
N1	C2	C2A	H2A1	180.0	90.0
N1	C2	C2A	H2A2	305.3	210.0
N1	C2	C2A	H2A3	54.7	330.0
N1	C2	C3	O3	180.8	180.0
N1	C2	C3	C4	359.9	359.4
C6	N1	C2	C2A	180.4	180.0
C6	N1	C2	C3	4.8	0.3
N1	C6	C5	C5A	182.2	180.0
N1	C6	C5	C4	11.9	360.0
C5	C6	N1	H6	180.0	180.0
C2A	C2	N1	C6	180.4	180.0
N1	C2	C2A	C3	184.5	180.3
C2A	C2	C3	O3	5.5	0.3
C2A	C2	C3	C4	184.7	179.7
H2A1	C2A	C2	H2A2	234.8	240.0
H2A1	C2A	C2	H2A3	125.3	120.0
H2A2	C2A	C2	H2A3	250.6	240.0
C3	C2	N1	C6	4.8	0.3
N1	C2	C3	C2A	175.3	179.7
C3	C2	C2A	H2A1	355.5	269.7
C3	C2	C2A	H2A2	120.7	29.7
C3	C2	C2A	H2A3	230.1	149.7
O3	C3	C2	C4	180.9	180.6
C2	C3	O3	HO3	180.0	269.4
C2	C3	C4	C5	1.2	0.5
C2	C3	C4	C4A	180.7	180.3
H2A1	C2A	C2	C3	355.5	269.7
C2	C2A	H2A1	H2A2	125.2	120.0
C2	C2A	H2A1	H2A3	234.7	240.0
H2A2	C2A	H2A1	H2A3	109.4	120.0
H2A2	C2A	C2	C3	120.7	29.7
C2	C2A	H2A2	H2A1	231.9	240.0
C2	C2A	H2A2	H2A3	115.9	120.0
H2A1	C2A	H2A2	H2A3	244.0	240.0
H2A3	C2A	C2	C3	230.1	149.7
C2	C2A	H2A3	H2A1	128.2	120.0
C2	C2A	H2A3	H2A2	244.1	240.0
H2A1	C2A	H2A3	H2A2	115.9	120.0
C2	C3	O3	C4	179.2	179.4
O3	C3	C4	C5	180.4	180.0
O3	C3	C4	C4A	359.9	359.8
C2	C3	C4	O3	180.8	180.6
C4	C3	O3	HO3	0.9	90.0
C6	C5	C4	C3	352.8	359.7
C5A	C5	C4	C3	182.6	179.7
C5	C4	C3	C4A	180.5	180.2
C3	C4	C4A	N9	349.4	270.3
C3	C4	C4A	H4A1	114.7	30.2
C3	C4	C4A	H4A2	224.2	150.3
HO3	O3	C3	C4	0.9	90.0
N1	C6	C5	H6	180.0	180.0
C3	C4	C5	C6	352.8	359.7
C5A	C5	C6	C4	170.3	180.1
C6	C5	C5A	OP4	241.6	360.0
C6	C5	C5A	H5A1	7.0	120.1
C6	C5	C5A	H5A2	116.4	240.0
C6	C5	C4	C4A	173.3	180.0
C3	C4	C5	C5A	182.6	179.7
C6	C5	C5A	C4	189.3	179.9
C5A	C5	C6	H6	2.1	0.0
C5A	C5	C4	C4A	3.1	359.9
OP4	C5A	C5	H5A1	234.7	239.9
OP4	C5A	C5	H5A2	125.3	120.0
C5	C5A	OP4	P	211.8	180.1
H5A1	C5A	C5	H5A2	250.6	240.1
C3	C4	C5	C4A	179.5	179.8
C6	C5	C4	C5A	170.2	180.1
C4	C5	C6	H6	191.8	180.0
C4	C5	C5A	OP4	52.3	180.0
C4	C5	C5A	H5A1	177.7	300.1
C4	C5	C5A	H5A2	287.0	60.0
C5	C4	C4A	N9	168.9	90.0
C5	C4	C4A	H4A1	294.2	210.0
C5	C4	C4A	H4A2	43.6	330.0
N1	C6	H6	C5	180.0	180.0
H6	C6	C5	C5A	2.1	0.0
H6	C6	C5	C4	191.8	180.0
OP4	C5A	C5	C4	52.3	180.0
C5	C5A	OP4	H5A1	125.3	120.1
C5	C5A	OP4	H5A2	234.7	240.0
H5A1	C5A	OP4	H5A2	109.4	119.9
C5A	OP4	P	OP1	316.9	180.1
C5A	OP4	P	OP2	204.2	300.0
C5A	OP4	P	OP3	79.2	60.0
H5A1	C5A	C5	C4	177.7	300.1
C5	C5A	H5A1	OP4	228.9	239.9
C5	C5A	H5A1	H5A2	114.4	120.0
OP4	C5A	H5A1	H5A2	245.5	240.1
H5A1	C5A	OP4	P	86.5	59.9
H5A2	C5A	C5	C4	287.0	60.0
C5	C5A	H5A2	OP4	131.1	120.0
C5	C5A	H5A2	H5A1	245.6	240.0
OP4	C5A	H5A2	H5A1	114.5	120.0
H5A2	C5A	OP4	P	337.1	300.0
P	OP4	C5A	H5A1	86.5	59.9
P	OP4	C5A	H5A2	337.1	300.0
OP1	P	OP4	OP2	112.6	240.0
OP1	P	OP4	OP3	237.6	120.1
OP4	P	OP1	HOP1	180.0	180.0
OP2	P	OP4	OP3	125.0	240.0
OP4	P	OP2	HOP2	180.0	300.0
OP4	P	OP1	OP2	258.4	120.0
OP4	P	OP1	OP3	116.6	239.9
OP2	P	OP1	OP3	218.1	119.9
OP1	P	OP2	HOP2	75.6	60.0
OP4	P	OP2	OP1	104.4	240.0
OP4	P	OP2	OP3	244.4	120.0
OP1	P	OP2	OP3	140.0	240.0
OP2	P	OP1	HOP1	281.6	60.0
OP4	P	OP3	OP1	247.5	120.1
OP4	P	OP3	OP2	109.5	240.0
OP1	P	OP3	OP2	222.1	120.0
OP3	P	OP1	HOP1	63.4	300.1
OP3	P	OP2	HOP2	295.5	180.0
HOP1	OP1	P	OP2	281.6	60.0
HOP1	OP1	P	OP3	63.4	300.1
HOP2	OP2	P	OP3	295.5	180.0
C3	C4	C4A	C5	180.6	180.2
N9	C4A	C4	H4A1	234.7	240.1
N9	C4A	C4	H4A2	125.3	120.0
C4	C4A	N9	C10	210.3	180.0
C4	C4A	N9	HN9	85.1	360.0
H4A1	C4A	C4	H4A2	250.6	239.9
C4	C4A	N9	H4A1	125.3	120.0
C4	C4A	N9	H4A2	234.8	239.9
H4A1	C4A	N9	H4A2	109.5	119.9
C9	C10	N9	C4A	161.3	179.7
C11	C10	N9	C4A	342.5	360.0
C10	N9	C4A	HN9	125.3	180.0
C4	C4A	H4A1	N9	234.9	240.0
C4	C4A	H4A1	H4A2	117.4	120.1
N9	C4A	H4A1	H4A2	242.5	240.1
H4A1	C4A	N9	C10	85.1	60.0
H4A1	C4A	N9	HN9	319.8	240.0
C4	C4A	H4A2	N9	125.1	120.0
C4	C4A	H4A2	H4A1	242.6	239.9
N9	C4A	H4A2	H4A1	117.5	119.9
H4A2	C4A	N9	C10	335.6	300.1
H4A2	C4A	N9	HN9	210.3	120.0
O2	C7	C8	O8	179.0	180.0
C8	C7	O2	HO2	180.0	180.0
C9	C8	C7	C13	178.5	180.3
C7	C8	C9	C10	180.7	180.2
C7	C8	C9	H9	0.7	359.8
C7	C8	C13	C12	180.7	180.0
C7	C8	C13	H13	0.6	0.1
C8	C7	O2	O8	180.9	180.0
O2	C7	C8	C9	359.5	180.3
O2	C7	C8	C13	181.0	360.0
C8	C7	O8	O2	179.0	180.0
O8	C7	C8	C9	180.4	0.3
O8	C7	C8	C13	1.9	180.0
O8	C7	O2	HO2	359.2	0.0
C9	C8	C7	O2	359.5	180.3
C9	C8	C7	O8	180.4	0.3
C7	C8	C9	C13	181.5	179.7
C9	C8	C13	C12	2.2	359.7
C9	C8	C13	H13	182.2	179.8
C10	C9	C8	H9	180.0	180.4
C8	C9	C10	C11	0.4	359.5
C8	C9	C10	N9	181.7	179.7
C13	C8	C7	O2	181.0	360.0
C13	C8	C7	O8	1.9	180.0
C7	C8	C13	C9	178.5	180.3
C13	C8	C9	C10	359.2	0.5
C13	C8	C9	H9	179.3	180.1
C11	C12	C13	C8	356.8	0.0
C8	C13	C12	H12	176.7	180.1
C12	C13	C8	H13	180.0	179.9
HO2	O2	C7	O8	359.2	0.0
C4A	N9	C10	C9	161.3	179.7
C10	C9	C8	C13	359.2	0.5
C8	C9	C10	H9	180.0	179.6
C11	C10	C9	N9	178.8	179.7
C9	C10	C11	C12	358.6	0.3
C9	C10	C11	H11	178.6	180.3
C9	C10	N9	HN9	286.6	359.7
H9	C9	C8	C13	179.3	180.1
C8	C9	H9	C10	180.0	180.4
H9	C9	C10	C11	180.4	179.9
H9	C9	C10	N9	1.6	0.2
C4A	N9	C10	C11	342.5	360.0
C11	C10	C9	H9	180.4	179.9
C9	C10	C11	N9	181.1	180.3
C11	C10	N9	HN9	107.7	180.0
C12	C11	C10	H11	180.0	180.0
C10	C11	C12	C13	2.9	360.0
C10	C11	C12	H12	183.0	179.9
C10	N9	C4A	H4A1	85.1	60.0
C10	N9	C4A	H4A2	335.6	300.1
C4A	N9	C10	HN9	234.8	180.0
N9	C10	C9	H9	1.6	0.2
C9	C10	N9	C11	178.8	179.7
N9	C10	C11	C12	177.5	180.0
N9	C10	C11	H11	357.6	0.0
C8	C13	C12	C11	356.8	0.0
C12	C11	C10	N9	177.5	180.0
C10	C11	C12	H11	180.0	180.0
C13	C12	C11	H12	180.0	180.0
C11	C12	C13	H13	176.8	180.0
H11	C11	C10	N9	357.6	0.0
C10	C11	H11	C12	180.0	180.0
H11	C11	C12	C13	182.9	180.0
H11	C11	C12	H12	2.9	360.0
C8	C13	C12	H13	180.0	180.1
C13	C12	C11	H11	182.9	180.0
C11	C12	C13	H12	180.0	180.0
H12	C12	C11	H11	2.9	360.0
C11	C12	H12	C13	180.0	180.0
H12	C12	C13	H13	356.7	0.0
C8	C13	H13	C12	180.0	179.9
H13	C13	C12	H12	356.7	0.0
HN9	N9	C4A	H4A1	319.8	240.0
HN9	N9	C4A	H4A2	210.3	120.0
C4A	N9	HN9	C10	132.9	180.0