PDB Chemical Component PXB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PXB

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.551	1.530
C2	C4	1.493	1.507
C4	O6	1.238	1.213
C4	N8	1.441	1.348
N8	S12	1.708	1.655
S12	O14	1.523	1.422
S12	O16	1.519	1.420
S12	C18	1.808	1.762
C18	C20	1.344	1.383
C18	C24	1.461	1.383
C20	C21	1.492	1.381
C21	C22	1.375	1.394
C22	C23	1.480	1.394
C22	C31	1.610	1.483
C23	C24	1.339	1.380
C31	C33	1.348	1.366
C31	C35	1.571	1.474
C33	O37	1.372	1.339
C33	C55	1.521	1.508
C35	N39	1.287	1.310
C35	C42	1.551	1.484
O37	N39	1.312	1.207
C42	C44	1.507	1.393
C42	C48	1.351	1.394
C44	C45	1.362	1.380
C45	C46	1.479	1.383
C46	C47	1.350	1.383
C47	C48	1.492	1.381
C1	H1	1.101	1.091
C1	H1A	1.100	1.089
C1	H1B	1.100	1.091
C2	H2	1.100	1.091
C2	H2A	1.100	1.090
N8	HN8	1.000	0.970
C20	H20	1.080	1.080
C21	H21	1.079	1.079
C23	H23	1.079	1.080
C24	H24	1.080	1.080
C44	H44	1.080	1.080
C45	H45	1.080	1.080
C46	H46	1.080	1.080
C47	H47	1.080	1.079
C48	H48	1.080	1.080
C55	H55	1.100	1.090
C55	H55A	1.100	1.090
C55	H55B	1.099	1.089

Bond Angles for PXB

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	C2	C4	109.9	109.5
C2	C1	H1	109.5	109.5
C2	C1	H1A	109.4	109.5
C2	C1	H1B	109.5	109.4
C1	C2	H2	109.3	109.5
C1	C2	H2A	109.2	109.5
C2	C4	O6	118.4	120.0
C2	C4	N8	119.2	120.0
C4	C2	H2	109.3	109.4
C4	C2	H2A	109.2	109.5
O6	C4	N8	122.4	120.0
C4	N8	S12	121.8	120.0
C4	N8	HN8	119.1	120.0
N8	S12	O14	105.9	106.4
N8	S12	O16	109.7	106.4
N8	S12	C18	116.6	107.3
S12	N8	HN8	119.1	120.0
O14	S12	O16	106.4	123.1
O14	S12	C18	108.0	106.4
O16	S12	C18	109.6	106.4
S12	C18	C20	122.3	119.9
S12	C18	C24	118.6	119.9
C20	C18	C24	119.0	120.2
C18	C20	C21	119.8	120.2
C18	C20	H20	120.1	119.9
C18	C24	C23	121.1	120.1
C18	C24	H24	119.5	119.9
C20	C21	C22	122.1	119.8
C21	C20	H20	120.1	119.9
C20	C21	H21	118.9	120.1
C21	C22	C23	115.4	119.7
C21	C22	C31	124.1	120.1
C22	C21	H21	118.9	120.0
C23	C22	C31	120.5	120.1
C22	C23	C24	122.6	119.9
C22	C23	H23	118.7	120.0
C22	C31	C33	128.1	128.5
C22	C31	C35	130.1	128.5
C24	C23	H23	118.7	120.1
C23	C24	H24	119.5	119.9
C33	C31	C35	101.8	103.0
C31	C33	O37	109.4	106.7
C31	C33	C55	129.9	126.7
C31	C35	N39	106.7	105.2
C31	C35	C42	136.0	127.4
O37	C33	C55	120.7	126.7
C33	O37	N39	111.3	113.2
C33	C55	H55	109.5	109.5
C33	C55	H55A	109.5	109.5
C33	C55	H55B	109.5	109.4
N39	C35	C42	117.4	127.3
C35	N39	O37	110.8	111.9
C35	C42	C44	118.0	120.2
C35	C42	C48	125.5	120.1
C44	C42	C48	116.5	119.8
C42	C44	C45	121.7	119.9
C42	C44	H44	119.2	120.0
C42	C48	C47	122.2	119.9
C42	C48	H48	118.9	120.1
C44	C45	C46	120.1	120.1
C45	C44	H44	119.1	120.1
C44	C45	H45	119.9	120.0
C45	C46	C47	119.1	120.2
C46	C45	H45	120.0	119.9
C45	C46	H46	120.5	119.9
C46	C47	C48	120.4	120.1
C47	C46	H46	120.5	119.9
C46	C47	H47	119.8	120.0
C48	C47	H47	119.8	119.9
C47	C48	H48	118.9	120.0
H1	C1	H1A	109.5	109.5
H1	C1	H1B	109.4	109.4
H1A	C1	H1B	109.5	109.5
H2	C2	H2A	109.8	109.5
H55	C55	H55A	109.5	109.5
H55	C55	H55B	109.5	109.5
H55A	C55	H55B	109.5	109.5

Torsion Angles for PXB

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C1	C2	C4	O6	356.9	360.0
C1	C2	C4	N8	174.0	180.0
C4	C2	C1	H2	240.0	240.1
C4	C2	C1	H2A	119.8	120.0
H1	C1	C2	H1A	240.0	239.9
H1	C1	C2	H1B	120.0	119.9
H1A	C1	C2	H1B	239.9	240.0
H2	C2	C1	H2A	239.8	239.9
C4	C2	C1	H1	280.0	300.0
C4	C2	C1	H1A	39.9	60.0
C4	C2	C1	H1B	160.0	180.0
C1	C2	C4	H2	120.0	120.0
C1	C2	C4	H2A	240.2	240.0
O6	C4	C2	N8	182.9	179.9
C2	C4	N8	S12	184.8	180.0
C2	C4	N8	HN8	4.8	359.9
H2	C2	C4	H2A	120.2	120.0
C2	C4	O6	N8	177.0	180.1
O6	C4	C2	H2	236.9	240.0
O6	C4	C2	H2A	116.7	120.0
O6	C4	N8	S12	1.8	0.1
O6	C4	N8	HN8	181.8	180.0
C2	C4	N8	O6	183.0	179.9
N8	C4	C2	H2	54.0	60.1
N8	C4	C2	H2A	293.8	300.0
C4	N8	S12	O14	155.2	178.5
C4	N8	S12	O16	40.7	311.4
C4	N8	S12	C18	275.4	65.0
S12	N8	C4	HN8	180.0	180.1
C4	N8	S12	HN8	180.0	179.9
O14	S12	N8	O16	114.5	227.1
O14	S12	N8	C18	239.8	113.6
O16	S12	N8	C18	125.3	246.5
N8	S12	C18	C20	88.9	90.0
N8	S12	C18	C24	266.3	269.8
N8	S12	O14	O16	243.3	122.9
N8	S12	O14	C18	125.6	245.8
O14	S12	N8	HN8	335.2	358.6
O16	S12	O14	C18	242.4	122.9
O14	S12	C18	C20	207.9	336.4
O14	S12	C18	C24	25.4	156.2
N8	S12	O16	O14	114.2	237.1
N8	S12	O16	C18	230.8	114.2
O16	S12	N8	HN8	220.7	131.5
O14	S12	O16	C18	116.6	237.1
O16	S12	C18	C20	323.5	203.6
O16	S12	C18	C24	140.9	23.3
N8	S12	C18	O14	240.9	113.6
N8	S12	C18	O16	125.3	246.4
C18	S12	N8	HN8	95.4	245.0
O14	S12	C18	O16	244.4	132.9
C20	C18	S12	C24	182.6	180.2
S12	C18	C20	C21	175.4	180.1
S12	C18	C20	H20	355.4	360.0
S12	C18	C24	C23	184.1	179.7
S12	C18	C24	H24	4.2	359.9
S12	C18	C20	C24	177.4	179.8
C20	C18	C24	C23	1.6	359.5
C20	C18	C24	H24	181.7	179.7
C18	C20	C21	C22	0.0	359.9
C21	C20	C18	H20	180.0	180.1
C18	C20	C21	H21	180.0	180.0
S12	C18	C24	C20	182.5	180.2
C24	C18	C20	C21	358.0	0.3
C24	C18	C20	H20	178.0	180.2
C22	C23	C24	C18	0.7	0.5
C18	C24	C23	H23	180.7	180.2
C23	C24	C18	H24	180.0	179.8
C21	C20	C18	C24	358.0	0.3
C18	C20	C21	H20	180.0	179.9
C20	C21	C22	C23	2.1	0.0
C20	C21	C22	C31	182.9	180.0
C22	C21	C20	H21	180.0	180.0
C22	C21	C20	H20	180.0	180.0
C20	C21	C22	H21	180.0	180.0
C23	C22	C21	C31	179.2	180.1
C21	C22	C23	C24	357.5	359.7
C21	C22	C23	H23	177.5	180.0
C21	C22	C31	C33	338.4	113.7
C21	C22	C31	C35	156.5	293.5
C18	C24	C23	C22	0.7	0.5
C21	C22	C23	C31	180.8	179.9
C23	C22	C21	H21	182.1	180.0
C23	C22	C31	C33	159.2	293.6
C23	C22	C31	C35	337.3	113.4
C24	C23	C22	H23	180.0	179.7
C22	C23	C24	H24	180.7	180.3
C21	C22	C31	C23	179.2	180.1
C31	C22	C21	H21	2.9	359.9
C31	C22	C23	C24	176.8	179.8
C31	C22	C23	H23	356.8	0.1
C33	C31	C22	C35	181.9	180.2
C22	C31	C33	O37	180.2	180.0
C22	C31	C33	C55	359.2	0.1
C22	C31	C35	N39	180.1	180.0
C22	C31	C35	C42	359.4	359.9
C18	C24	C23	H24	180.0	180.2
C24	C23	C22	C31	176.8	179.8
C22	C23	C24	H23	180.0	180.3
C22	C31	C33	C35	178.5	179.8
C33	C31	C35	N39	358.5	359.8
C33	C31	C35	C42	177.9	179.8
O37	C33	C31	C55	181.0	180.0
C31	C33	O37	N39	358.6	359.9
C31	C33	C55	H55	45.9	89.9
C31	C33	C55	H55A	165.9	210.0
C31	C33	C55	H55B	285.9	330.0
C22	C31	C35	C33	181.5	180.2
C35	C31	C33	O37	1.7	0.2
C35	C31	C33	C55	180.7	180.2
N39	C35	C31	C42	180.6	180.0
C31	C35	N39	O37	0.7	0.2
C31	C35	C42	C44	179.1	139.4
C31	C35	C42	C48	357.8	319.1
O37	C33	C31	C35	1.7	0.2
C31	C33	O37	C55	179.1	180.0
O37	C33	C55	H55	224.8	270.0
O37	C33	C55	H55A	344.8	30.0
O37	C33	C55	H55B	104.8	150.0
C35	N39	O37	C33	0.4	360.0
C55	C33	C31	C35	180.7	180.2
C31	C33	C55	O37	181.0	180.0
C55	C33	O37	N39	179.4	179.8
H55	C55	C33	H55A	240.0	240.0
H55	C55	C33	H55B	120.0	120.0
H55A	C55	C33	H55B	240.0	240.0
C31	C35	N39	C42	179.5	180.0
C33	O37	N39	C35	0.4	360.0
N39	C35	C42	C44	358.5	319.4
N39	C35	C42	C48	177.1	139.1
C31	C35	C42	N39	180.7	180.0
C42	C35	N39	O37	181.2	180.2
C44	C42	C35	C48	181.4	180.3
C35	C42	C44	C45	179.6	180.0
C35	C42	C44	H44	359.5	360.0
C35	C42	C48	C47	181.0	179.7
C35	C42	C48	H48	1.0	359.9
N39	O37	C33	C55	179.4	179.8
O37	N39	C35	C42	181.2	180.2
C35	C42	C44	C48	178.7	179.7
C44	C42	C48	C47	359.6	359.4
C44	C42	C48	H48	179.6	179.6
C42	C44	C45	C46	358.5	0.0
C45	C44	C42	H44	180.0	180.1
C42	C44	C45	H45	178.5	180.0
C35	C42	C48	C44	181.4	180.3
C48	C42	C44	C45	0.8	0.3
C48	C42	C44	H44	180.8	180.2
C46	C47	C48	C42	0.7	0.5
C42	C48	C47	H47	180.7	180.3
C47	C48	C42	H48	180.0	179.8
C45	C44	C42	C48	0.8	0.3
C42	C44	C45	H44	180.0	179.9
C44	C45	C46	C47	1.7	360.0
C46	C45	C44	H45	180.0	180.0
C44	C45	C46	H46	181.7	180.0
C46	C45	C44	H44	178.5	180.1
C44	C45	C46	H45	180.0	180.0
C45	C46	C47	C48	358.7	359.7
C47	C46	C45	H46	180.0	180.0
C45	C46	C47	H47	178.6	180.0
C42	C48	C47	C46	0.7	0.5
C47	C46	C45	H45	181.7	180.0
C45	C46	C47	H46	180.0	180.0
C48	C47	C46	H47	180.0	179.8
C46	C47	C48	H48	180.7	180.4
C42	C48	C47	H48	180.0	180.2
C48	C47	C46	H46	178.7	179.7
C46	C47	C48	H47	180.0	180.2
H1	C1	C2	C4	280.0	300.0
C2	C1	H1	H1A	120.0	120.1
C2	C1	H1	H1B	240.0	240.1
H1	C1	C2	H2	40.0	59.9
H1	C1	C2	H2A	160.2	180.0
H1A	C1	H1	H1B	120.1	120.0
H1A	C1	C2	C4	39.9	60.0
C2	C1	H1A	H1	240.0	239.9
C2	C1	H1A	H1B	120.0	120.0
H1A	C1	C2	H2	159.9	180.0
H1A	C1	C2	H2A	280.1	300.1
H1	C1	H1A	H1B	240.0	240.0
H1B	C1	C2	C4	160.0	180.0
C2	C1	H1B	H1	120.0	120.0
C2	C1	H1B	H1A	240.0	240.0
H1B	C1	C2	H2	280.0	300.0
H1B	C1	C2	H2A	40.2	60.0
H1	C1	H1B	H1A	120.0	120.0
C1	C2	H2	C4	239.6	240.0
H2	C2	C1	H1	40.0	59.9
H2	C2	C1	H1A	159.9	180.0
H2	C2	C1	H1B	280.0	300.0
C1	C2	H2	H2A	119.8	120.1
H2	C2	C4	O6	236.9	240.0
H2	C2	C4	N8	54.0	60.1
C4	C2	H2	H2A	240.2	240.0
C1	C2	H2A	C4	120.2	120.0
H2A	C2	C1	H1	160.2	180.0
H2A	C2	C1	H1A	280.1	300.1
H2A	C2	C1	H1B	40.2	60.0
C1	C2	H2A	H2	240.1	240.0
H2A	C2	C4	O6	116.7	120.0
H2A	C2	C4	N8	293.8	300.0
C4	C2	H2A	H2	119.9	120.0
C4	N8	HN8	S12	180.0	180.1
HN8	N8	S12	O14	335.2	358.6
HN8	N8	S12	O16	220.7	131.5
HN8	N8	S12	C18	95.4	245.0
H20	C20	C18	C24	178.0	180.2
C18	C20	H20	C21	180.0	180.1
H20	C20	C21	C22	180.0	180.0
H20	C20	C21	H21	0.0	0.1
C20	C21	H21	C22	180.0	180.0
H21	C21	C20	H20	0.0	0.1
H21	C21	C22	C23	182.1	180.0
H21	C21	C22	C31	2.9	359.9
H23	C23	C22	C31	356.8	0.1
C22	C23	H23	C24	180.0	179.7
H23	C23	C24	H24	0.6	0.0
C18	C24	H24	C23	180.0	179.8
H24	C24	C23	H23	0.6	0.0
H44	C44	C42	C48	180.8	180.2
C42	C44	H44	C45	180.0	180.1
H44	C44	C45	C46	178.5	180.1
H44	C44	C45	H45	358.5	0.1
C44	C45	H45	C46	180.0	180.0
H45	C45	C44	H44	358.5	0.1
H45	C45	C46	C47	181.7	180.0
H45	C45	C46	H46	1.7	360.0
C45	C46	H46	C47	180.0	180.0
H46	C46	C45	H45	1.7	360.0
H46	C46	C47	C48	178.7	179.7
H46	C46	C47	H47	358.6	360.0
C46	C47	H47	C48	180.0	179.8
H47	C47	C46	H46	358.6	360.0
H47	C47	C48	H48	0.8	0.1
C42	C48	H48	C47	180.0	179.8
H48	C48	C47	H47	0.8	0.1
C33	C55	H55	H55A	120.0	120.0
C33	C55	H55	H55B	240.0	240.0
H55A	C55	H55	H55B	120.0	120.1
C33	C55	H55A	H55	240.0	240.0
C33	C55	H55A	H55B	120.0	120.0
H55	C55	H55A	H55B	240.0	240.0
C33	C55	H55B	H55	120.0	120.0
C33	C55	H55B	H55A	240.0	240.0
H55	C55	H55B	H55A	120.0	120.0