PDB Chemical Component PVV

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PVV

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C16	O2	1.429	1.429
O2	C	1.369	1.360
C5	C	1.387	1.384
C5	C4	1.397	1.387
C	C1	1.409	1.392
C6	C4	1.509	1.507
C6	C7	1.514	1.530
C4	C3	1.403	1.379
C13	N2	1.377	1.319
C13	C12	1.346	1.334
N2	C11	1.309	1.297
C7	N	1.497	1.471
C1	O1	1.368	1.360
C1	C2	1.385	1.383
C12	S	1.703	1.761
O1	C15	1.429	1.429
C11	N1	1.381	1.389
C11	S	1.735	1.710
C3	C2	1.394	1.388
C3	C8	1.534	1.506
N1	C10	1.370	1.348
N	C8	1.544	1.467
C8	C9	1.544	1.530
C8	C14	1.550	1.530
C9	C10	1.512	1.506
C10	O	1.227	1.213
C5	H1	1.080	1.080
C6	H2	1.100	1.090
C6	H3	1.100	1.089
N1	H4	1.000	0.970
C7	H5	1.100	1.090
C7	H6	1.100	1.089
C9	H7	1.100	1.091
C9	H8	1.100	1.090
C12	H9	1.080	1.080
C13	H10	1.080	1.080
C14	H11	1.100	1.090
C14	H12	1.100	1.090
C14	H13	1.100	1.091
C15	H14	1.100	1.090
C15	H15	1.100	1.089
C15	H16	1.100	1.090
N	H17	1.000	1.009
C16	H19	1.100	1.090
C16	H20	1.100	1.090
C16	H21	1.100	1.090
C2	H22	1.080	1.080

Bond Angles for PVV

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O2	C16	H19	109.5	109.5
O2	C16	H20	109.5	109.5
O2	C16	H21	109.5	109.4
C5	C	C1	119.4	119.6
C	C5	H1	119.6	119.8
C5	C4	C3	119.7	119.9
C	C1	O1	115.6	120.1
C	C1	C2	119.7	119.7
C6	C4	C3	122.2	121.7
C6	C7	N	109.4	108.5
C7	C6	H2	108.7	109.3
C7	C6	H3	108.7	109.4
C6	C7	H5	109.5	109.6
C6	C7	H6	109.5	109.6
C4	C3	C2	119.2	119.8
C4	C3	C8	121.6	121.8
C13	C12	S	110.3	108.1
C13	C12	H9	124.9	125.9
N2	C11	S	114.8	110.1
C7	N	C8	115.9	110.3
N	C7	H5	109.5	109.7
N	C7	H6	109.5	109.7
C7	N	H17	107.8	111.1
C2	C1	O1	124.7	120.1
C1	C2	H22	119.4	119.8
C11	S	C12	89.0	90.3
S	C12	H9	124.8	126.0
O1	C15	H14	109.5	109.4
O1	C15	H15	109.5	109.5
O1	C15	H16	109.5	109.5
C11	N1	H4	117.4	120.0
C3	C2	H22	119.5	119.8
N1	C10	C9	114.8	120.0
N1	C10	O	123.4	120.0
C10	N1	H4	117.4	120.0
C9	C8	C14	109.1	109.3
C8	C9	C10	126.3	109.5
C8	C9	H7	105.1	109.4
C8	C9	H8	105.1	109.5
C8	C14	H11	109.5	109.5
C8	C14	H12	109.5	109.5
C8	C14	H13	109.5	109.4
C9	C10	O	121.9	120.0
C10	C9	H7	105.2	109.5
C10	C9	H8	105.1	109.5
H2	C6	H3	109.5	109.3
H5	C7	H6	109.4	109.8
H7	C9	H8	109.5	109.4
H11	C14	H12	109.5	109.5
H11	C14	H13	109.4	109.5
H12	C14	H13	109.5	109.4
H14	C15	H15	109.4	109.5
H14	C15	H16	109.5	109.4
H15	C15	H16	109.5	109.5
H19	C16	H20	109.5	109.5
H19	C16	H21	109.4	109.5
H20	C16	H21	109.4	109.5

Torsion Angles for PVV

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
H19	C16	O2	H20	239.9	240.0
H19	C16	O2	H21	120.0	120.0
H20	C16	O2	H21	240.0	240.0
O2	C	C5	H1	359.1	0.1
C	C5	C4	C3	1.8	359.9
C5	C	C1	O1	180.7	180.1
C5	C	C1	C2	359.8	0.2
C6	C4	C5	C3	184.2	179.7
C5	C4	C3	C2	357.9	0.2
C5	C4	C3	C8	177.0	180.5
C1	C	C5	H1	179.4	180.0
C2	C1	C	O1	179.1	180.1
C	C1	C2	H22	179.8	179.9
C5	C4	C6	C3	175.7	180.3
C6	C4	C3	C2	173.5	180.6
C6	C4	C3	C8	352.6	0.8
C7	C6	C4	C3	27.1	342.9
C6	C7	N	C8	59.2	288.8
N	C7	C6	H5	240.0	240.3
N	C7	C6	H6	120.0	119.7
C6	C7	N	H17	180.2	52.2
H2	C6	C7	H3	119.1	119.7
H5	C7	C6	H6	240.0	239.5
C4	C3	C2	H22	181.3	179.9
C13	N2	C11	S	0.2	360.0
C11	S	C12	C13	0.2	0.0
S	C12	C13	H9	180.0	180.0
N2	C11	S	C12	359.7	360.0
N2	C11	N1	H4	7.2	360.0
N	C7	C6	H2	188.7	290.3
N	C7	C6	H3	69.6	170.6
C6	C7	N	H5	120.0	119.7
C6	C7	N	H6	240.0	240.3
H5	C7	N	H6	120.0	120.7
C	C1	O1	C2	179.0	180.1
O1	C1	C2	H22	358.8	360.0
C1	O1	C15	H14	180.0	180.0
C1	O1	C15	H15	300.0	300.0
C1	O1	C15	H16	60.0	60.1
C	C1	C2	O1	181.0	179.9
C4	C3	C2	C1	1.4	359.8
C3	C2	C1	H22	180.0	180.1
C13	C12	S	H9	180.0	180.0
H14	C15	O1	H15	240.0	240.0
H14	C15	O1	H16	120.0	119.9
H15	C15	O1	H16	240.0	239.9
C11	N1	C10	O	18.9	360.0
C10	N1	C11	H4	180.0	180.1
C13	C12	S	C11	0.2	0.0
C11	S	C12	H9	180.2	180.0
S	C11	N1	H4	189.5	180.0
C4	C3	C2	C8	179.2	180.2
C3	C2	C1	O1	178.8	180.1
C1	C2	C3	H22	180.0	179.9
C4	C3	C8	C2	180.8	179.8
C3	C8	C9	H7	74.6	300.5
C3	C8	C9	H8	190.1	60.5
C3	C8	C14	H11	180.0	179.5
C3	C8	C14	H12	300.0	299.5
C3	C8	C14	H13	60.0	59.5
C11	N1	C10	H4	180.0	179.9
C8	C9	C10	N1	119.9	180.0
C9	C10	N1	O	180.4	180.0
N1	C10	C9	H7	357.7	60.0
N1	C10	C9	H8	242.2	300.0
C4	C3	C8	N	12.0	342.2
C8	N	C7	H5	299.2	169.1
C8	N	C7	H6	179.2	48.4
C7	N	C8	H17	120.9	123.5
N	C8	C9	H7	312.9	179.5
N	C8	C9	H8	68.4	299.5
N	C8	C14	H11	301.9	300.4
N	C8	C14	H12	62.0	60.5
N	C8	C14	H13	182.0	180.4
C4	C3	C8	C9	252.7	221.9
C7	N	C8	C9	82.5	172.9
N1	C10	C9	C8	119.9	180.0
C9	C8	C14	H11	57.7	59.9
C9	C8	C14	H12	177.7	180.0
C9	C8	C14	H13	297.7	299.9
C8	C9	C10	O	300.4	359.9
C10	C9	C8	H7	237.7	240.0
C10	C9	C8	H8	122.2	120.1
H7	C9	C8	H8	244.5	240.1
C4	C3	C8	C14	131.3	102.4
C7	N	C8	C14	199.4	292.4
C14	C8	C9	C10	75.1	300.1
C14	C8	C9	H7	197.3	60.1
C14	C8	C9	H8	312.8	180.0
H11	C14	C8	H12	240.0	240.0
H11	C14	C8	H13	120.0	120.0
H12	C14	C8	H13	240.0	240.1
N1	C10	C9	O	179.6	180.0
C9	C10	N1	H4	19.3	0.0
C10	C9	C8	C14	75.1	300.1
C8	C9	C10	H7	122.2	120.0
C8	C9	C10	H8	237.8	240.0
H7	C9	C10	H8	115.5	120.0
N1	C10	O	C9	180.5	180.0
O	C10	N1	H4	198.9	180.0
O	C10	C9	H7	178.1	240.0
O	C10	C9	H8	62.6	120.0
H1	C5	C	C1	179.4	180.0
H1	C5	C4	C3	181.8	179.8
H2	C6	C4	C3	147.5	103.0
H2	C6	C7	N	188.7	290.3
C7	C6	H2	H3	241.4	240.2
H2	C6	C7	H5	308.8	50.0
H2	C6	C7	H6	68.7	170.5
H3	C6	C4	C3	266.6	222.7
H3	C6	C7	N	69.6	170.6
C7	C6	H3	H2	118.6	119.7
H3	C6	C7	H5	189.7	290.3
H3	C6	C7	H6	309.6	50.8
H4	N1	C10	C9	19.3	0.0
H4	N1	C10	O	198.9	180.0
C6	C7	H5	N	240.0	241.0
H5	C7	C6	H2	308.8	50.0
H5	C7	C6	H3	189.7	290.3
C6	C7	H5	H6	120.0	120.4
H5	C7	N	C8	299.2	169.1
N	C7	H5	H6	240.0	239.4
H5	C7	N	H17	60.2	292.5
C6	C7	H6	N	120.0	119.0
H6	C7	C6	H2	68.7	170.5
H6	C7	C6	H3	309.6	50.8
C6	C7	H6	H5	240.0	239.6
H6	C7	N	C8	179.2	48.4
N	C7	H6	H5	120.0	120.6
H6	C7	N	H17	300.2	171.9
H7	C9	C8	C14	197.3	60.1
C8	C9	H7	C10	224.9	240.0
C8	C9	H7	H8	112.4	120.0
H7	C9	C10	O	178.1	240.0
C10	C9	H7	H8	247.5	240.0
H8	C9	C8	C14	312.8	180.0
C8	C9	H8	C10	135.0	120.1
C8	C9	H8	H7	247.6	240.1
H8	C9	C10	O	62.6	120.0
C10	C9	H8	H7	112.5	120.0
C13	C12	H9	S	180.0	180.0
H10	C13	C12	S	179.9	180.1
H10	C13	C12	H9	359.9	0.1
C8	C14	H11	H12	120.0	120.0
C8	C14	H11	H13	240.0	240.0
H12	C14	H11	H13	120.0	120.0
C8	C14	H12	H11	240.0	240.0
C8	C14	H12	H13	120.0	119.9
H11	C14	H12	H13	240.0	240.0
C8	C14	H13	H11	120.0	120.0
C8	C14	H13	H12	240.0	240.0
H11	C14	H13	H12	120.0	120.0
O1	C15	H14	H15	120.0	120.0
O1	C15	H14	H16	240.0	240.1
H15	C15	H14	H16	120.0	120.1
O1	C15	H15	H14	240.0	240.1
O1	C15	H15	H16	120.0	120.0
H14	C15	H15	H16	240.0	240.0
O1	C15	H16	H14	120.1	119.9
O1	C15	H16	H15	240.0	239.9
H14	C15	H16	H15	120.0	120.0
C7	N	H17	C8	234.2	237.0
H17	N	C7	H5	60.2	292.5
H17	N	C7	H6	300.2	171.9
O2	C16	H19	H20	120.0	120.0
O2	C16	H19	H21	240.0	240.0
H20	C16	H19	H21	119.9	120.0
O2	C16	H20	H19	239.9	240.0
O2	C16	H20	H21	120.0	119.9
H19	C16	H20	H21	240.1	240.0
O2	C16	H21	H19	120.0	120.0
O2	C16	H21	H20	240.0	240.0
H19	C16	H21	H20	120.0	120.0
H22	C2	C1	O1	358.8	360.0