PDB Chemical Component PVH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PVH
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.463 |
1.469 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.008 |
| CA |
C |
1.511 |
1.507 |
| CA |
CB |
1.544 |
1.530 |
| CA |
HA |
1.100 |
1.090 |
| C |
O |
1.231 |
1.207 |
| C |
OXT |
1.370 |
1.343 |
| CB |
CG |
1.503 |
1.508 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.100 |
1.090 |
| CG |
ND1 |
1.376 |
1.341 |
| CG |
CD2 |
1.356 |
1.347 |
| ND1 |
CE1 |
1.324 |
1.305 |
| ND1 |
HD1 |
1.000 |
0.970 |
| CD2 |
NE2 |
1.373 |
1.369 |
| CD2 |
HD2 |
1.080 |
1.080 |
| CE1 |
NE2 |
1.316 |
1.350 |
| CE1 |
HE1 |
1.080 |
1.079 |
| NE2 |
HE2 |
1.000 |
0.970 |
| OXT |
CM |
1.459 |
1.452 |
| CM |
HM1 |
1.100 |
1.090 |
| CM |
HM2 |
1.100 |
1.090 |
| CM |
HM3 |
1.100 |
1.090 |
Bond Angles for PVH
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
106.6 |
| CA |
N |
H2 |
109.4 |
106.7 |
| N |
CA |
C |
108.3 |
109.5 |
| N |
CA |
CB |
109.0 |
109.5 |
| N |
CA |
HA |
108.4 |
109.5 |
| H |
N |
H2 |
109.5 |
106.7 |
| C |
CA |
CB |
102.2 |
109.4 |
| C |
CA |
HA |
114.6 |
109.4 |
| CA |
C |
O |
118.7 |
120.0 |
| CA |
C |
OXT |
123.0 |
120.0 |
| CB |
CA |
HA |
114.0 |
109.5 |
| CA |
CB |
CG |
116.7 |
109.5 |
| CA |
CB |
HB2 |
107.1 |
109.5 |
| CA |
CB |
HB3 |
105.5 |
109.5 |
| O |
C |
OXT |
117.4 |
120.0 |
| C |
OXT |
CM |
120.5 |
120.0 |
| CG |
CB |
HB2 |
107.2 |
109.4 |
| CG |
CB |
HB3 |
105.5 |
109.4 |
| CB |
CG |
ND1 |
122.8 |
126.0 |
| CB |
CG |
CD2 |
130.4 |
125.9 |
| HB2 |
CB |
HB3 |
115.3 |
109.5 |
| ND1 |
CG |
CD2 |
106.0 |
108.1 |
| CG |
ND1 |
CE1 |
109.6 |
109.3 |
| CG |
ND1 |
HD1 |
125.2 |
125.4 |
| CG |
CD2 |
NE2 |
107.0 |
106.8 |
| CG |
CD2 |
HD2 |
126.5 |
126.7 |
| CE1 |
ND1 |
HD1 |
125.2 |
125.4 |
| ND1 |
CE1 |
NE2 |
108.0 |
108.7 |
| ND1 |
CE1 |
HE1 |
126.0 |
125.7 |
| NE2 |
CD2 |
HD2 |
126.5 |
126.6 |
| CD2 |
NE2 |
CE1 |
109.4 |
107.2 |
| CD2 |
NE2 |
HE2 |
125.3 |
126.4 |
| NE2 |
CE1 |
HE1 |
126.0 |
125.6 |
| CE1 |
NE2 |
HE2 |
125.3 |
126.4 |
| OXT |
CM |
HM1 |
109.5 |
109.5 |
| OXT |
CM |
HM2 |
109.4 |
109.6 |
| OXT |
CM |
HM3 |
109.5 |
109.5 |
| HM1 |
CM |
HM2 |
109.5 |
109.5 |
| HM1 |
CM |
HM3 |
109.5 |
109.4 |
| HM2 |
CM |
HM3 |
109.5 |
109.4 |
Torsion Angles for PVH
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
246.2 |
| C |
CA |
N |
CB |
110.4 |
120.0 |
| C |
CA |
N |
HA |
235.0 |
240.0 |
| N |
CA |
C |
O |
307.8 |
340.0 |
| N |
CA |
C |
OXT |
116.7 |
160.1 |
| CB |
CA |
N |
HA |
124.6 |
120.0 |
| N |
CA |
CB |
CG |
318.1 |
295.0 |
| N |
CA |
CB |
HB2 |
78.1 |
54.9 |
| N |
CA |
CB |
HB3 |
201.5 |
175.0 |
| CA |
N |
H |
H2 |
120.0 |
113.8 |
| H |
N |
CA |
C |
300.6 |
306.2 |
| H |
N |
CA |
CB |
190.2 |
186.2 |
| H |
N |
CA |
HA |
65.6 |
66.2 |
| CA |
N |
H2 |
H |
240.0 |
246.3 |
| H2 |
N |
CA |
C |
60.6 |
60.0 |
| H2 |
N |
CA |
CB |
310.2 |
300.0 |
| H2 |
N |
CA |
HA |
185.6 |
180.0 |
| C |
CA |
N |
H |
300.6 |
306.2 |
| C |
CA |
N |
H2 |
60.6 |
60.0 |
| N |
CA |
C |
CB |
245.0 |
240.0 |
| N |
CA |
C |
HA |
121.2 |
120.0 |
| CB |
CA |
C |
HA |
236.2 |
240.0 |
| C |
CA |
CB |
CG |
203.7 |
175.0 |
| C |
CA |
CB |
HB2 |
323.7 |
294.9 |
| C |
CA |
CB |
HB3 |
87.0 |
55.0 |
| O |
C |
CA |
OXT |
191.1 |
179.9 |
| CA |
C |
OXT |
CM |
44.9 |
180.0 |
| CB |
CA |
N |
H |
190.2 |
186.2 |
| CB |
CA |
N |
H2 |
310.2 |
300.0 |
| N |
CA |
CB |
C |
114.5 |
120.0 |
| N |
CA |
CB |
HA |
238.7 |
239.9 |
| C |
CA |
CB |
HA |
124.3 |
120.0 |
| CB |
CA |
C |
O |
62.7 |
100.0 |
| CB |
CA |
C |
OXT |
231.7 |
280.1 |
| CG |
CB |
CA |
HB2 |
240.0 |
240.0 |
| CG |
CB |
CA |
HB3 |
116.7 |
120.0 |
| CA |
CB |
CG |
ND1 |
262.4 |
264.7 |
| CA |
CB |
CG |
CD2 |
94.0 |
85.0 |
| HB2 |
CB |
CA |
HB3 |
236.7 |
239.9 |
| HA |
CA |
N |
H |
65.6 |
66.2 |
| HA |
CA |
N |
H2 |
185.6 |
180.0 |
| N |
CA |
HA |
C |
238.9 |
240.0 |
| N |
CA |
HA |
CB |
121.6 |
120.0 |
| C |
CA |
HA |
CB |
242.7 |
240.0 |
| HA |
CA |
C |
O |
186.6 |
220.0 |
| HA |
CA |
C |
OXT |
355.5 |
40.0 |
| HA |
CA |
CB |
CG |
79.4 |
55.0 |
| HA |
CA |
CB |
HB2 |
199.4 |
175.0 |
| HA |
CA |
CB |
HB3 |
322.7 |
295.0 |
| O |
C |
CA |
CB |
62.7 |
100.0 |
| O |
C |
CA |
HA |
186.6 |
220.0 |
| CA |
C |
O |
OXT |
169.5 |
180.1 |
| O |
C |
OXT |
CM |
214.0 |
0.1 |
| OXT |
C |
CA |
CB |
231.7 |
280.1 |
| OXT |
C |
CA |
HA |
355.5 |
40.0 |
| CA |
C |
OXT |
O |
190.9 |
179.9 |
| C |
OXT |
CM |
HM1 |
23.5 |
299.9 |
| C |
OXT |
CM |
HM2 |
143.5 |
59.9 |
| C |
OXT |
CM |
HM3 |
263.5 |
180.0 |
| CG |
CB |
CA |
HA |
79.4 |
55.0 |
| CA |
CB |
CG |
HB2 |
120.0 |
120.0 |
| CA |
CB |
CG |
HB3 |
243.3 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
123.4 |
120.0 |
| ND1 |
CG |
CB |
CD2 |
168.4 |
179.7 |
| CB |
CG |
ND1 |
CE1 |
189.8 |
179.9 |
| CB |
CG |
ND1 |
HD1 |
9.8 |
0.2 |
| CB |
CG |
CD2 |
NE2 |
169.2 |
180.0 |
| CB |
CG |
CD2 |
HD2 |
349.1 |
359.9 |
| HB2 |
CB |
CA |
HA |
199.4 |
175.0 |
| CA |
CB |
HB2 |
CG |
234.1 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
117.0 |
120.1 |
| CG |
CB |
HB2 |
HB3 |
242.9 |
240.1 |
| HB2 |
CB |
CG |
ND1 |
142.4 |
144.7 |
| HB2 |
CB |
CG |
CD2 |
334.0 |
325.0 |
| HB3 |
CB |
CA |
HA |
322.7 |
295.0 |
| CA |
CB |
HB3 |
CG |
124.0 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
242.1 |
239.9 |
| CG |
CB |
HB3 |
HB2 |
118.0 |
119.9 |
| HB3 |
CB |
CG |
ND1 |
19.0 |
24.8 |
| HB3 |
CB |
CG |
CD2 |
210.6 |
205.1 |
| ND1 |
CG |
CB |
HB2 |
142.4 |
144.7 |
| ND1 |
CG |
CB |
HB3 |
19.0 |
24.8 |
| CB |
CG |
ND1 |
CD2 |
189.1 |
180.3 |
| ND1 |
CG |
CD2 |
NE2 |
359.3 |
0.3 |
| ND1 |
CG |
CD2 |
HD2 |
179.2 |
180.2 |
| CE1 |
ND1 |
CG |
HD1 |
180.0 |
179.7 |
| CG |
ND1 |
CE1 |
NE2 |
359.6 |
0.3 |
| CG |
ND1 |
CE1 |
HE1 |
179.7 |
180.1 |
| CD2 |
CG |
CB |
HB2 |
334.0 |
325.0 |
| CD2 |
CG |
CB |
HB3 |
210.6 |
205.1 |
| CB |
CG |
CD2 |
ND1 |
169.9 |
179.7 |
| CD2 |
CG |
ND1 |
CE1 |
0.7 |
359.6 |
| CD2 |
CG |
ND1 |
HD1 |
180.7 |
179.9 |
| NE2 |
CD2 |
CG |
HD2 |
180.0 |
180.1 |
| CG |
CD2 |
NE2 |
CE1 |
0.5 |
359.9 |
| CG |
CD2 |
NE2 |
HE2 |
180.6 |
180.0 |
| CE1 |
ND1 |
CG |
CD2 |
0.7 |
359.6 |
| CG |
ND1 |
CE1 |
HD1 |
180.0 |
180.3 |
| CD2 |
NE2 |
CE1 |
ND1 |
359.9 |
359.9 |
| NE2 |
CE1 |
ND1 |
HE1 |
180.0 |
180.2 |
| ND1 |
CE1 |
NE2 |
HE2 |
179.9 |
179.8 |
| HD1 |
ND1 |
CG |
CD2 |
180.7 |
179.9 |
| CG |
ND1 |
HD1 |
CE1 |
180.0 |
179.7 |
| HD1 |
ND1 |
CE1 |
NE2 |
179.6 |
180.0 |
| HD1 |
ND1 |
CE1 |
HE1 |
359.7 |
359.9 |
| CG |
CD2 |
NE2 |
HD2 |
180.0 |
179.9 |
| ND1 |
CE1 |
NE2 |
CD2 |
359.9 |
359.9 |
| CD2 |
NE2 |
CE1 |
HE1 |
179.9 |
180.0 |
| CE1 |
NE2 |
CD2 |
HE2 |
180.0 |
179.9 |
| CG |
CD2 |
HD2 |
NE2 |
180.0 |
180.1 |
| HD2 |
CD2 |
NE2 |
CE1 |
180.6 |
180.0 |
| HD2 |
CD2 |
NE2 |
HE2 |
0.6 |
0.1 |
| NE2 |
CE1 |
ND1 |
HD1 |
179.6 |
180.0 |
| ND1 |
CE1 |
NE2 |
HE1 |
180.0 |
179.8 |
| CE1 |
NE2 |
CD2 |
HD2 |
180.6 |
180.0 |
| CD2 |
NE2 |
CE1 |
HE2 |
180.0 |
180.1 |
| HE1 |
CE1 |
ND1 |
HD1 |
359.7 |
359.9 |
| ND1 |
CE1 |
HE1 |
NE2 |
180.0 |
180.2 |
| HE1 |
CE1 |
NE2 |
HE2 |
359.9 |
359.9 |
| HE2 |
NE2 |
CD2 |
HD2 |
0.6 |
0.1 |
| CD2 |
NE2 |
HE2 |
CE1 |
180.0 |
179.9 |
| HE2 |
NE2 |
CE1 |
HE1 |
359.9 |
359.9 |
| HM1 |
CM |
OXT |
HM2 |
240.0 |
239.9 |
| HM1 |
CM |
OXT |
HM3 |
120.0 |
119.9 |
| HM2 |
CM |
OXT |
HM3 |
240.0 |
240.0 |
| OXT |
CM |
HM1 |
HM2 |
120.0 |
120.1 |
| OXT |
CM |
HM1 |
HM3 |
240.0 |
240.0 |
| HM2 |
CM |
HM1 |
HM3 |
120.0 |
119.9 |
| OXT |
CM |
HM2 |
HM1 |
240.0 |
239.9 |
| OXT |
CM |
HM2 |
HM3 |
120.0 |
120.0 |
| HM1 |
CM |
HM2 |
HM3 |
240.0 |
240.1 |
| OXT |
CM |
HM3 |
HM1 |
120.0 |
120.0 |
| OXT |
CM |
HM3 |
HM2 |
240.0 |
239.9 |
| HM1 |
CM |
HM3 |
HM2 |
120.0 |
119.9 |