PDB Chemical Component PVB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PVB

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.358	1.327
N1	C6	1.363	1.328
C9	N9	1.495	1.465
C9	C11	1.534	1.530
C9	C10	1.523	1.530
N9	C4	1.332	1.372
N9	C8	1.362	1.365
C4	N3	1.438	1.329
C4	C5	1.464	1.404
N3	C2	1.345	1.323
C2	N2	1.349	1.385
C6	C5	1.400	1.406
C6	N6	1.361	1.385
C5	N7	1.329	1.356
N7	C8	1.392	1.301
N6	C1A	1.349	1.391
C1A	C2A	1.400	1.393
C1A	C6A	1.410	1.391
C2A	C3A	1.398	1.377
C3A	C4A	1.402	1.398
C4A	C5A	1.493	1.400
C4A	CX	1.494	1.474
C5A	CL1	1.514	1.735
C5A	C6A	1.402	1.378
CX	OX1	1.260	1.348
CX	OX2	1.250	1.215
N2	C12	1.447	1.465
C12	C13	1.541	1.530
C12	C15	1.546	1.530
C13	C16	1.529	1.530
C13	C14	1.531	1.531
C15	O1	1.412	1.430
C9	H9	1.100	1.090
C11	H111	1.100	1.090
C11	H112	1.100	1.090
C11	H113	1.100	1.090
C10	H101	1.100	1.090
C10	H102	1.100	1.090
C10	H103	1.099	1.090
C8	H8	1.080	1.080
N2	H2	1.000	0.970
N6	H6	1.001	0.971
C2A	H2A	1.080	1.080
C6A	H6A	1.080	1.080
C3A	H3A	1.080	1.080
OX1	HX1	0.950	0.967
C12	H12	1.100	1.090
C13	H13	1.100	1.090
C15	H151	1.100	1.090
C15	H152	1.099	1.089
C16	H161	1.100	1.090
C16	H162	1.100	1.090
C16	H163	1.100	1.090
C14	H141	1.100	1.090
C14	H142	1.100	1.090
C14	H143	1.100	1.089
O1	H1	0.950	0.967

Bond Angles for PVB

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	123.7	121.2
N1	C2	N3	121.5	122.3
N1	C2	N2	120.5	118.9
N1	C6	C5	119.9	118.6
N1	C6	N6	120.0	120.7
N9	C9	C11	112.8	109.5
N9	C9	C10	110.2	109.5
C9	N9	C4	128.9	126.3
C9	N9	C8	128.0	126.2
N9	C9	H9	107.2	109.5
C11	C9	C10	111.1	109.5
C11	C9	H9	106.2	109.5
C9	C11	H111	109.5	109.5
C9	C11	H112	109.5	109.5
C9	C11	H113	109.4	109.5
C10	C9	H9	109.1	109.4
C9	C10	H101	109.5	109.4
C9	C10	H102	109.5	109.5
C9	C10	H103	109.4	109.4
C4	N9	C8	103.1	107.5
N9	C4	N3	127.7	134.8
N9	C4	C5	111.6	106.0
N9	C8	N7	113.6	109.9
N9	C8	H8	123.2	125.1
N3	C4	C5	120.7	119.2
C4	N3	C2	117.9	120.5
C4	C5	C6	116.2	118.3
C4	C5	N7	105.2	107.2
N3	C2	N2	118.0	118.9
C2	N2	C12	120.6	120.0
C2	N2	H2	105.9	120.0
C5	C6	N6	120.1	120.7
C6	C5	N7	138.6	134.5
C6	N6	C1A	121.0	120.0
C6	N6	H6	119.5	120.0
C5	N7	C8	106.5	109.4
N7	C8	H8	123.2	125.0
N6	C1A	C2A	117.3	119.9
N6	C1A	C6A	121.0	120.0
C1A	N6	H6	119.5	120.0
C2A	C1A	C6A	121.8	120.2
C1A	C2A	C3A	120.6	120.1
C1A	C2A	H2A	119.7	119.9
C1A	C6A	C5A	120.0	120.1
C1A	C6A	H6A	120.0	119.9
C2A	C3A	C4A	119.6	119.9
C3A	C2A	H2A	119.7	120.0
C2A	C3A	H3A	120.2	120.0
C3A	C4A	C5A	120.4	119.9
C3A	C4A	CX	118.4	120.1
C4A	C3A	H3A	120.2	120.1
C5A	C4A	CX	121.3	120.0
C4A	C5A	CL1	121.7	120.1
C4A	C5A	C6A	117.7	119.8
C4A	CX	OX1	118.7	120.0
C4A	CX	OX2	116.9	120.0
CL1	C5A	C6A	120.6	120.1
C5A	C6A	H6A	120.0	120.0
OX1	CX	OX2	124.3	120.0
CX	OX1	HX1	109.5	117.0
N2	C12	C13	109.9	109.5
N2	C12	C15	107.3	109.5
C12	N2	H2	105.9	120.0
N2	C12	H12	114.7	109.4
C13	C12	C15	119.1	109.5
C12	C13	C16	110.8	109.5
C12	C13	C14	113.7	109.5
C13	C12	H12	101.6	109.4
C12	C13	H13	105.4	109.5
C12	C15	O1	113.7	109.5
C15	C12	H12	104.4	109.5
C12	C15	H151	108.1	109.4
C12	C15	H152	107.2	109.5
C16	C13	C14	109.0	109.5
C16	C13	H13	110.4	109.5
C13	C16	H161	109.5	109.5
C13	C16	H162	109.4	109.5
C13	C16	H163	109.4	109.4
C14	C13	H13	107.4	109.4
C13	C14	H141	109.5	109.5
C13	C14	H142	109.4	109.4
C13	C14	H143	109.5	109.5
O1	C15	H151	108.1	109.4
O1	C15	H152	107.1	109.5
C15	O1	H1	109.5	113.9
H111	C11	H112	109.5	109.4
H111	C11	H113	109.5	109.5
H112	C11	H113	109.5	109.4
H101	C10	H102	109.4	109.5
H101	C10	H103	109.5	109.5
H102	C10	H103	109.5	109.5
H151	C15	H152	112.8	109.5
H161	C16	H162	109.5	109.5
H161	C16	H163	109.5	109.5
H162	C16	H163	109.5	109.5
H141	C14	H142	109.5	109.5
H141	C14	H143	109.4	109.5
H142	C14	H143	109.5	109.5

Torsion Angles for PVB

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	C5	359.0	360.0
C2	N1	C6	N6	178.8	179.9
C4	N3	C2	N1	0.7	0.0
N3	C2	N1	N2	180.4	180.1
N1	C2	N2	C12	8.6	174.7
N1	C2	N2	H2	128.6	354.7
C6	N1	C2	N3	0.5	0.0
C6	N1	C2	N2	180.1	180.0
C4	C5	C6	N1	0.2	360.0
C5	C6	N1	N6	180.2	180.0
N1	C6	C5	N7	179.0	180.1
N1	C6	N6	C1A	9.2	7.4
N1	C6	N6	H6	189.2	187.4
C11	C9	N9	C10	235.2	240.0
C11	C9	N9	H9	116.6	120.0
N9	C9	C11	H111	324.9	60.1
N9	C9	C11	H112	84.9	180.0
N9	C9	C11	H113	204.9	300.0
C10	C9	N9	H9	241.4	240.0
N9	C9	C10	H101	328.6	60.0
N9	C9	C10	H102	88.6	180.0
N9	C9	C10	H103	208.6	300.0
C4	N9	C9	C8	179.9	180.0
C9	N9	C4	N3	358.2	360.0
C9	N9	C4	C5	179.9	180.0
C9	N9	C8	N7	180.0	180.0
C9	N9	C8	H8	359.9	0.0
N9	C9	C11	C10	124.3	120.0
C11	C9	N9	C4	308.8	120.0
C11	C9	N9	C8	128.9	300.0
N9	C9	C11	H9	242.8	240.0
C10	C9	C11	H9	118.5	120.0
C11	C9	C10	H101	94.4	180.0
C11	C9	C10	H102	214.4	300.0
C11	C9	C10	H103	334.4	60.0
H111	C11	C9	H112	240.0	240.0
H111	C11	C9	H113	120.0	120.0
H112	C11	C9	H113	240.0	240.0
N9	C9	C10	C11	234.2	240.0
C10	C9	N9	C4	73.6	240.0
C10	C9	N9	C8	253.7	60.0
N9	C9	C10	H9	117.5	120.0
C11	C9	C10	H9	243.3	240.0
C10	C9	C11	H111	200.6	300.0
C10	C9	C11	H112	320.6	60.0
C10	C9	C11	H113	80.6	180.0
H101	C10	C9	H102	240.0	240.0
H101	C10	C9	H103	120.0	120.0
H102	C10	C9	H103	240.0	240.0
C4	N9	C9	C11	308.8	120.0
C4	N9	C9	C10	73.6	240.0
C9	N9	C4	C8	180.0	180.0
C4	N9	C9	H9	192.2	360.0
C4	N9	C8	N7	360.0	0.0
C4	N9	C8	H8	180.0	180.0
N3	C4	N9	C5	178.4	180.0
N9	C4	N3	C2	180.3	180.0
N9	C4	C5	C6	179.5	180.0
N9	C4	C5	N7	0.3	360.0
C8	N9	C9	C11	128.9	300.0
C8	N9	C9	C10	253.7	60.0
C9	N9	C8	C4	180.0	180.0
C8	N9	C9	H9	12.3	180.0
C8	N9	C4	N3	178.2	180.0
C8	N9	C4	C5	359.8	0.0
C5	N7	C8	N9	0.2	360.0
N7	C8	N9	H8	180.0	180.0
N1	C2	N3	C4	0.7	0.0
N3	C4	N9	C8	178.2	180.0
N9	C4	N3	C5	181.8	180.0
N3	C4	C5	C6	1.0	0.0
N3	C4	C5	N7	181.8	180.0
C4	N3	C2	N2	181.2	180.1
N1	C6	C5	C4	0.2	360.0
C5	C4	N9	C8	359.8	0.0
N9	C4	C5	N3	178.5	180.0
C5	C4	N3	C2	358.5	360.0
C4	C5	C6	N6	180.4	180.0
C6	C5	C4	N7	179.2	180.0
C4	C5	N7	C8	359.7	0.0
N3	C2	N1	C6	0.5	0.0
N1	C2	N3	N2	179.6	179.9
C2	N3	C4	C5	358.5	360.0
N3	C2	N2	C12	188.1	354.7
N3	C2	N2	H2	308.1	174.7
N2	C2	N1	C6	180.1	180.0
N1	C2	N2	N3	180.4	180.1
C2	N2	C12	C13	205.6	266.7
C2	N2	C12	C15	74.7	146.7
C12	N2	C2	H2	240.0	180.0
C2	N2	C12	H12	319.2	26.7
N1	C6	C5	N6	179.8	180.0
C4	C5	C6	N7	181.2	179.9
C5	C6	N6	C1A	189.0	187.4
C5	C6	N6	H6	9.0	7.3
C6	C5	N7	C8	180.8	180.0
N1	C6	N6	C5	180.2	180.0
N6	C6	C5	N7	359.2	0.1
C6	N6	C1A	C2A	114.8	214.2
C6	N6	C1A	C6A	295.1	33.8
C1A	N6	C6	H6	180.0	180.1
N9	C8	N7	C5	0.2	360.0
C4	C5	N7	C6	178.9	180.1
N7	C5	C6	N6	359.2	0.1
C5	N7	C8	H8	180.2	180.0
N9	C8	N7	H8	180.0	180.0
C6	N6	C1A	H6	180.0	179.9
C2A	C1A	N6	C6A	179.7	180.4
N6	C1A	C2A	C3A	179.6	180.0
N6	C1A	C2A	H2A	359.6	359.9
N6	C1A	C6A	C5A	179.5	179.8
N6	C1A	C6A	H6A	359.6	0.1
N6	C1A	C2A	C6A	180.3	179.6
C2A	C1A	N6	H6	294.8	34.3
C2A	C1A	C6A	C5A	359.9	359.4
C2A	C1A	C6A	H6A	179.9	179.7
C1A	C2A	C3A	C4A	1.2	359.9
C3A	C2A	C1A	H2A	180.0	180.1
C1A	C2A	C3A	H3A	181.2	179.9
N6	C1A	C6A	C2A	179.7	180.4
C6A	C1A	N6	H6	115.1	213.9
C6A	C1A	C2A	C3A	359.3	0.4
C6A	C1A	C2A	H2A	179.3	180.2
C4A	C5A	C6A	C1A	0.4	0.5
CL1	C5A	C6A	C1A	180.0	180.3
C5A	C6A	C1A	H6A	180.0	179.7
C3A	C2A	C1A	C6A	359.3	0.4
C1A	C2A	C3A	H2A	180.0	179.9
C2A	C3A	C4A	C5A	359.1	360.0
C2A	C3A	C4A	CX	179.4	180.0
C4A	C3A	C2A	H3A	180.0	180.0
C4A	C3A	C2A	H2A	181.2	180.1
C2A	C3A	C4A	H3A	180.0	180.0
C5A	C4A	C3A	CX	179.7	180.0
C3A	C4A	C5A	CL1	180.5	180.0
C3A	C4A	C5A	C6A	0.1	359.8
C3A	C4A	CX	OX1	212.8	359.9
C3A	C4A	CX	OX2	32.7	180.0
C1A	C6A	C5A	C4A	0.4	0.5
C3A	C4A	C5A	CX	180.3	180.0
C5A	C4A	C3A	H3A	179.1	180.0
C5A	C4A	CX	OX1	33.1	180.0
C5A	C4A	CX	OX2	213.0	0.0
CL1	C5A	C4A	C6A	180.4	180.2
C4A	C5A	C6A	H6A	180.4	180.2
C3A	C4A	CX	C5A	179.7	180.0
CX	C4A	C3A	H3A	359.5	0.0
CX	C4A	C5A	CL1	0.1	359.9
CX	C4A	C5A	C6A	179.8	179.7
OX1	CX	C4A	OX2	180.1	180.0
C4A	CX	OX1	HX1	179.9	180.1
C1A	C6A	C5A	CL1	180.0	180.3
CL1	C5A	C4A	CX	0.1	359.9
C4A	C5A	CL1	C6A	179.6	179.8
CL1	C5A	C6A	H6A	0.0	0.0
C1A	C6A	C5A	H6A	180.0	180.3
C6A	C5A	C4A	CX	179.8	179.7
C4A	C5A	C6A	CL1	180.4	180.2
C4A	CX	OX1	OX2	179.9	180.0
C4A	CX	OX2	OX1	180.1	180.0
OX2	CX	OX1	HX1	360.0	0.0
C2	N2	C12	H2	120.0	180.0
C13	C12	N2	C15	130.8	120.0
N2	C12	C13	C16	66.7	64.1
N2	C12	C13	C14	303.6	184.1
C13	C12	N2	H12	246.4	240.1
N2	C12	C13	H13	186.2	304.1
N2	C12	C15	O1	111.0	65.1
C15	C12	N2	H12	115.5	120.0
N2	C12	C15	H151	231.0	185.0
N2	C12	C15	H152	352.8	305.0
N2	C12	C13	C15	235.7	240.0
C13	C12	N2	H2	85.6	86.7
N2	C12	C13	H12	121.8	119.9
C13	C12	C15	O1	345.5	305.0
C15	C12	C13	H12	246.1	240.0
C13	C12	C15	H151	105.5	65.0
C13	C12	C15	H152	227.3	185.0
C16	C13	C12	C14	123.1	240.0
C16	C13	C12	H13	240.5	120.0
C12	C13	C16	H161	280.8	63.6
C12	C13	C16	H162	40.8	183.6
C12	C13	C16	H163	160.8	303.6
C14	C13	C12	H13	117.4	240.1
C12	C13	C14	H141	161.6	65.6
C12	C13	C14	H142	281.6	185.6
C12	C13	C14	H143	41.6	305.6
N2	C12	C15	C13	125.5	120.0
C15	C12	N2	H2	314.7	326.7
N2	C12	C15	H12	237.9	240.0
C15	C12	C13	C16	191.0	184.2
C15	C12	C13	C14	67.9	304.2
C13	C12	C15	H12	112.4	120.0
C15	C12	C13	H13	310.5	64.1
O1	C15	C12	H151	240.0	240.1
O1	C15	C12	H152	118.2	120.1
C12	C15	O1	H1	94.3	180.0
H151	C15	C12	H152	238.2	240.0
C16	C13	C12	C15	191.0	184.2
C12	C13	C16	C14	234.2	120.0
C16	C13	C12	H12	304.9	304.2
C12	C13	C16	H13	116.5	239.9
C14	C13	C16	H13	242.2	119.9
C16	C13	C14	H141	37.5	185.7
C16	C13	C14	H142	157.5	305.6
C16	C13	C14	H143	277.5	65.6
H161	C16	C13	H162	240.0	240.0
H161	C16	C13	H163	120.0	120.0
H162	C16	C13	H163	240.0	240.0
C14	C13	C12	C15	67.9	304.2
C12	C13	C14	C16	124.1	240.0
C14	C13	C12	H12	181.8	64.2
C12	C13	C14	H13	243.8	120.0
C16	C13	C14	H13	119.6	240.0
C14	C13	C16	H161	46.6	303.6
C14	C13	C16	H162	166.6	63.6
C14	C13	C16	H163	286.6	183.6
H141	C14	C13	H142	240.0	240.0
H141	C14	C13	H143	120.0	120.0
H142	C14	C13	H143	240.0	240.0
O1	C15	C12	H12	233.1	185.0
C12	C15	O1	H151	120.0	119.9
C12	C15	O1	H152	241.8	239.9
H151	C15	O1	H152	121.8	120.0
N9	C9	H9	C11	120.9	120.0
N9	C9	H9	C10	240.7	240.0
H9	C9	N9	C4	192.2	360.0
H9	C9	N9	C8	12.3	180.0
C11	C9	H9	C10	119.8	120.0
H9	C9	C11	H111	82.1	180.0
H9	C9	C11	H112	202.1	300.0
H9	C9	C11	H113	322.1	60.0
H9	C9	C10	H101	211.1	300.0
H9	C9	C10	H102	331.1	60.0
H9	C9	C10	H103	91.1	180.0
H111	C11	C9	C10	200.6	300.0
H111	C11	C9	H9	82.1	180.0
C9	C11	H111	H112	120.0	120.0
C9	C11	H111	H113	240.0	239.9
H112	C11	H111	H113	120.0	119.9
H112	C11	C9	C10	320.6	60.0
H112	C11	C9	H9	202.1	300.0
C9	C11	H112	H111	240.0	240.0
C9	C11	H112	H113	120.0	120.0
H111	C11	H112	H113	240.0	240.0
H113	C11	C9	C10	80.6	180.0
H113	C11	C9	H9	322.1	60.0
C9	C11	H113	H111	120.0	120.0
C9	C11	H113	H112	240.0	240.0
H111	C11	H113	H112	120.0	119.9
H101	C10	C9	H9	211.1	300.0
C9	C10	H101	H102	120.0	120.0
C9	C10	H101	H103	240.0	240.0
H102	C10	H101	H103	120.0	120.1
H102	C10	C9	H9	331.1	60.0
C9	C10	H102	H101	240.0	240.0
C9	C10	H102	H103	120.0	120.0
H101	C10	H102	H103	240.0	240.0
H103	C10	C9	H9	91.1	180.0
C9	C10	H103	H101	120.0	120.0
C9	C10	H103	H102	240.0	240.0
H101	C10	H103	H102	120.0	120.1
N9	C8	H8	N7	180.0	180.0
C2	N2	H2	C12	230.8	180.0
H2	N2	C12	C13	85.6	86.7
H2	N2	C12	C15	314.7	326.7
H2	N2	C12	H12	199.2	206.6
C6	N6	H6	C1A	180.0	180.1
H6	N6	C1A	C2A	294.8	34.3
H6	N6	C1A	C6A	115.1	213.9
H2A	C2A	C1A	C6A	179.3	180.2
C1A	C2A	H2A	C3A	180.0	180.1
H2A	C2A	C3A	C4A	181.2	180.1
H2A	C2A	C3A	H3A	1.2	0.1
C1A	C6A	H6A	C5A	180.0	179.7
C2A	C3A	H3A	C4A	180.0	180.0
H3A	C3A	C2A	H2A	1.2	0.1
H3A	C3A	C4A	C5A	179.1	180.0
H3A	C3A	C4A	CX	359.5	0.0
HX1	OX1	CX	OX2	360.0	0.0
N2	C12	H12	C13	241.6	240.1
N2	C12	H12	C15	117.2	120.0
H12	C12	N2	H2	199.2	206.6
C13	C12	H12	C15	235.6	240.0
H12	C12	C13	C16	304.9	304.2
H12	C12	C13	C14	181.8	64.2
H12	C12	C13	H13	64.4	184.2
H12	C12	C15	O1	233.1	185.0
H12	C12	C15	H151	353.1	305.0
H12	C12	C15	H152	115.0	65.0
H13	C13	C12	C15	310.5	64.1
C12	C13	H13	C16	240.2	120.1
C12	C13	H13	C14	121.5	240.0
H13	C13	C12	H12	64.4	184.2
C16	C13	H13	C14	241.3	120.0
H13	C13	C16	H161	164.4	183.6
H13	C13	C16	H162	284.4	303.7
H13	C13	C16	H163	44.4	63.6
H13	C13	C14	H141	277.8	305.6
H13	C13	C14	H142	37.9	65.6
H13	C13	C14	H143	157.9	185.6
C12	C15	H151	O1	236.6	240.0
H151	C15	C12	H12	353.1	305.0
C12	C15	H151	H152	118.3	120.0
O1	C15	H151	H152	241.7	239.9
H151	C15	O1	H1	334.3	60.0
C12	C15	H152	O1	122.3	120.0
H152	C15	C12	H12	115.0	65.0
C12	C15	H152	H151	241.1	240.0
O1	C15	H152	H151	118.8	120.0
H152	C15	O1	H1	212.5	300.0
H161	C16	C13	C14	46.6	303.6
H161	C16	C13	H13	164.4	183.6
C13	C16	H161	H162	120.0	120.0
C13	C16	H161	H163	240.0	240.1
H162	C16	H161	H163	120.0	120.0
H162	C16	C13	C14	166.6	63.6
H162	C16	C13	H13	284.4	303.7
C13	C16	H162	H161	240.0	240.0
C13	C16	H162	H163	120.0	119.9
H161	C16	H162	H163	240.0	239.9
H163	C16	C13	C14	286.6	183.6
H163	C16	C13	H13	44.4	63.6
C13	C16	H163	H161	120.0	120.0
C13	C16	H163	H162	240.0	240.0
H161	C16	H163	H162	120.0	120.0
H141	C14	C13	H13	277.8	305.6
C13	C14	H141	H142	120.0	120.0
C13	C14	H141	H143	240.0	240.0
H142	C14	H141	H143	120.0	120.0
H142	C14	C13	H13	37.9	65.6
C13	C14	H142	H141	240.0	240.0
C13	C14	H142	H143	120.0	120.0
H141	C14	H142	H143	240.0	239.9
H143	C14	C13	H13	157.9	185.6
C13	C14	H143	H141	120.0	120.0
C13	C14	H143	H142	240.0	240.0
H141	C14	H143	H142	120.0	120.0
H1	O1	C15	H151	334.3	60.0
H1	O1	C15	H152	212.5	300.0