PDB Chemical Component PUK

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PUK

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.473 1.469
N H 1.000 1.009
CA C2 1.537 1.530
CA C3 1.527 1.530
CA HA 1.100 1.090
C2 H3 1.100 1.090
C2 H4 1.100 1.090
C2 N2 1.456 1.470
C3 C4 1.497 1.507
C3 H5 1.100 1.089
C3 H6 1.100 1.090
C4 C5 1.401 1.382
C4 C6 1.399 1.383
C5 C7 1.388 1.382
C5 H7 1.080 1.080
C6 C8 1.402 1.382
C6 H8 1.080 1.080
C7 C9 1.396 1.382
C7 H9 1.080 1.080
C8 C9 1.399 1.382
C8 H10 1.080 1.079
C9 H11 1.080 1.080
N2 C10 1.466 1.469
N2 H12 1.000 1.009
C10 C 1.541 1.507
C10 C12 1.550 1.530
C10 H13 1.099 1.090
C O 1.250 1.208
C OXT 1.324 1.343
C12 C13 1.500 1.506
C12 H14 1.100 1.089
C12 H15 1.100 1.090
C13 C14 1.404 1.383
C13 C15 1.383 1.382
C14 C16 1.388 1.383
C14 H16 1.080 1.080
C15 C17 1.399 1.382
C15 H17 1.080 1.080
C16 C18 1.397 1.382
C16 H18 1.080 1.079
C17 C18 1.404 1.382
C17 H19 1.080 1.080
C18 H20 1.080 1.080
OXT HXT 0.950 0.967
N H2 1.000 1.009

Bond Angles for PUK

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 109.5 111.0
N CA C2 112.4 109.5
N CA C3 109.6 109.5
N CA HA 107.5 109.4
CA N H2 109.5 111.0
H N H2 109.5 111.0
C2 CA C3 110.0 109.5
C2 CA HA 107.1 109.5
CA C2 H3 109.2 109.5
CA C2 H4 109.3 109.5
CA C2 N2 110.1 109.5
C3 CA HA 110.1 109.4
CA C3 C4 118.5 109.5
CA C3 H5 106.6 109.5
CA C3 H6 106.6 109.4
H3 C2 H4 109.7 109.5
N2 C2 H3 109.2 109.4
N2 C2 H4 109.2 109.5
C2 N2 C10 114.0 111.0
C2 N2 H12 108.0 110.9
C4 C3 H5 106.5 109.5
C4 C3 H6 106.6 109.5
C3 C4 C5 121.5 120.0
C3 C4 C6 118.5 120.0
H5 C3 H6 112.2 109.5
C5 C4 C6 120.0 120.0
C4 C5 C7 121.0 120.0
C4 C5 H7 119.5 120.0
C4 C6 C8 120.2 120.0
C4 C6 H8 119.9 120.0
C7 C5 H7 119.5 120.0
C5 C7 C9 117.9 120.0
C5 C7 H9 121.0 120.0
C8 C6 H8 119.9 120.0
C6 C8 C9 118.1 120.0
C6 C8 H10 120.9 120.0
C9 C7 H9 121.0 120.0
C7 C9 C8 122.8 120.0
C7 C9 H11 118.6 120.0
C9 C8 H10 121.0 120.1
C8 C9 H11 118.6 120.0
C10 N2 H12 108.0 111.0
N2 C10 C 110.5 109.5
N2 C10 C12 110.5 109.4
N2 C10 H13 109.2 109.5
C C10 C12 112.8 109.5
C C10 H13 106.8 109.5
C10 C O 120.7 120.0
C10 C OXT 113.8 120.0
C12 C10 H13 106.8 109.5
C10 C12 C13 111.7 109.4
C10 C12 H14 108.7 109.4
C10 C12 H15 108.7 109.4
O C OXT 125.6 120.0
C OXT HXT 109.5 117.0
C13 C12 H14 108.7 109.5
C13 C12 H15 108.8 109.5
C12 C13 C14 119.5 120.0
C12 C13 C15 121.5 120.0
H14 C12 H15 110.2 109.4
C14 C13 C15 118.9 120.0
C13 C14 C16 120.7 120.0
C13 C14 H16 119.7 120.0
C13 C15 C17 122.1 120.0
C13 C15 H17 118.9 120.0
C16 C14 H16 119.6 120.0
C14 C16 C18 119.3 119.9
C14 C16 H18 120.4 120.0
C17 C15 H17 118.9 120.0
C15 C17 C18 117.6 120.0
C15 C17 H19 121.2 120.0
C18 C16 H18 120.3 120.0
C16 C18 C17 121.3 120.0
C16 C18 H20 119.3 119.9
C18 C17 H19 121.2 120.0
C17 C18 H20 119.3 120.0

Torsion Angles for PUK

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 239.9 236.1
C2 CA N C3 122.7 120.0
C2 CA N HA 242.3 239.9
N CA C2 H3 178.7 175.0
N CA C2 H4 298.8 295.0
N CA C2 N2 58.8 55.0
C3 CA N HA 119.6 120.0
N CA C3 C4 311.9 295.0
N CA C3 H5 71.9 55.1
N CA C3 H6 191.9 175.1
H N CA C2 180.0 296.1
H N CA C3 57.3 176.1
H N CA HA 297.6 56.1
CA N H H2 120.0 123.9
C2 CA N H 180.0 296.1
N CA C2 C3 237.6 240.0
N CA C2 HA 117.9 120.0
C2 CA N H2 300.0 60.0
C3 CA C2 HA 240.4 240.0
C2 CA C3 C4 187.8 175.0
C2 CA C3 H5 307.8 295.0
C2 CA C3 H6 67.8 55.1
H3 C2 CA H4 239.9 240.0
N2 C2 CA H3 240.0 240.1
N2 C2 CA H4 120.0 120.1
CA C2 N2 C10 128.7 180.0
CA C2 N2 H12 248.7 303.9
C3 CA N H 57.3 176.1
N CA C3 C2 124.1 120.0
N CA C3 HA 241.9 240.1
C3 CA N H2 177.3 300.0
C2 CA C3 HA 117.8 120.0
C3 CA C2 H3 301.2 295.0
C3 CA C2 H4 61.2 55.0
C3 CA C2 N2 181.2 175.0
C4 C3 CA H5 240.0 240.0
C4 C3 CA H6 120.0 119.9
CA C3 C4 C5 326.5 90.1
CA C3 C4 C6 148.7 269.7
H5 C3 CA H6 240.0 240.0
HA CA N H 297.6 56.1
N CA HA C2 238.9 240.0
N CA HA C3 119.3 120.0
HA CA N H2 57.7 180.0
C2 CA HA C3 240.4 240.0
HA CA C2 H3 60.8 55.0
HA CA C2 H4 180.9 175.0
HA CA C2 N2 300.9 295.0
HA CA C3 C4 70.0 55.0
HA CA C3 H5 189.9 175.0
HA CA C3 H6 310.0 295.0
H3 C2 CA C3 301.2 295.0
H3 C2 CA HA 60.8 55.0
CA C2 H3 H4 119.8 120.0
CA C2 H3 N2 239.5 240.0
N2 C2 H3 H4 240.3 240.0
H3 C2 N2 C10 8.8 60.0
H3 C2 N2 H12 128.8 183.9
H4 C2 CA C3 61.2 55.0
H4 C2 CA HA 180.9 175.0
CA C2 H4 H3 240.2 240.0
CA C2 H4 N2 120.5 120.0
N2 C2 H4 H3 119.7 120.0
H4 C2 N2 C10 248.7 300.1
H4 C2 N2 H12 8.7 64.0
N2 C2 CA C3 181.2 175.0
N2 C2 CA HA 300.9 295.0
CA C2 N2 H3 120.0 120.0
CA C2 N2 H4 240.0 239.9
H3 C2 N2 H4 120.0 120.0
C10 N2 C2 H12 240.0 236.1
C2 N2 C10 C 276.5 275.0
C2 N2 C10 C12 150.9 155.0
C2 N2 C10 H13 33.7 35.0
C4 C3 CA HA 70.0 55.0
CA C3 C4 H5 120.0 120.0
CA C3 C4 H6 240.0 240.1
H5 C3 C4 H6 120.0 120.0
C5 C4 C3 C6 177.8 180.3
C3 C4 C5 C7 179.9 180.0
C3 C4 C5 H7 359.9 359.9
C3 C4 C6 C8 180.1 180.0
C3 C4 C6 H8 0.0 360.0
H5 C3 CA HA 189.9 175.0
CA C3 H5 C4 232.6 240.0
CA C3 H5 H6 116.3 120.0
C4 C3 H5 H6 243.7 240.0
H5 C3 C4 C5 206.5 330.0
H5 C3 C4 C6 28.7 149.7
H6 C3 CA HA 310.0 295.0
CA C3 H6 C4 127.4 119.9
CA C3 H6 H5 243.7 240.0
C4 C3 H6 H5 116.3 120.0
H6 C3 C4 C5 86.5 210.0
H6 C3 C4 C6 268.7 29.7
C5 C4 C3 H5 206.5 330.0
C5 C4 C3 H6 86.5 210.0
C3 C4 C5 C6 182.2 179.7
C5 C4 C6 C8 2.2 359.7
C5 C4 C6 H8 182.1 179.6
C7 C5 C4 H7 180.0 180.1
C4 C5 C7 C9 2.0 359.9
C4 C5 C7 H9 182.0 180.0
C6 C4 C3 H5 28.7 149.7
C6 C4 C3 H6 268.7 29.7
C3 C4 C6 C5 177.9 180.3
C6 C4 C5 C7 357.7 0.4
C6 C4 C5 H7 177.7 180.2
C8 C6 C4 H8 180.0 180.1
C4 C6 C8 C9 358.2 -0.0
C4 C6 C8 H10 178.3 180.0
C7 C5 C4 C6 357.7 0.4
C4 C5 C7 H7 180.0 179.9
C9 C7 C5 H9 180.0 179.9
C5 C7 C9 C8 358.4 359.8
C5 C7 C9 H11 178.4 180.0
H7 C5 C4 C6 177.7 180.2
C4 C5 H7 C7 180.0 180.1
H7 C5 C7 C9 182.0 180.0
H7 C5 C7 H9 2.0 0.1
C4 C6 C8 H8 180.0 179.9
C7 C9 C8 C6 1.5 0.2
C9 C8 C6 H10 180.0 180.0
C6 C8 C9 H11 181.5 180.0
C4 C6 H8 C8 180.0 180.1
H8 C6 C8 C9 178.3 180.1
H8 C6 C8 H10 358.3 0.1
C9 C7 C5 H7 182.0 180.0
C5 C7 C9 H9 180.0 180.1
C6 C8 C9 C7 1.5 0.2
C7 C9 C8 H10 181.5 180.2
C8 C9 C7 H11 180.0 179.8
H9 C7 C5 H7 2.0 0.1
C5 C7 H9 C9 180.0 179.9
H9 C7 C9 C8 178.4 179.7
H9 C7 C9 H11 358.4 360.0
C9 C8 C6 H8 178.3 180.1
C6 C8 C9 H10 180.0 180.0
C8 C9 C7 H9 178.4 179.7
C7 C9 C8 H11 180.0 180.2
H10 C8 C6 H8 358.3 0.1
C6 C8 H10 C9 180.0 180.0
H10 C8 C9 H11 1.5 360.0
H11 C9 C7 H9 358.4 360.0
C7 C9 H11 C8 180.0 179.8
H11 C9 C8 H10 1.5 360.0
C10 N2 C2 H3 8.8 60.0
C10 N2 C2 H4 248.7 300.1
C2 N2 C10 H12 120.0 123.9
C C10 N2 C12 125.6 120.0
C C10 N2 H13 242.8 240.0
N2 C10 C O 344.1 360.0
N2 C10 C OXT 164.6 180.0
C12 C10 N2 H13 117.2 120.0
N2 C10 C12 C13 66.5 295.0
N2 C10 C12 H14 186.5 55.0
N2 C10 C12 H15 306.5 175.0
H12 N2 C2 H3 128.8 183.9
H12 N2 C2 H4 8.7 64.0
C2 N2 H12 C10 236.3 236.1
H12 N2 C10 C 156.5 151.1
H12 N2 C10 C12 30.9 31.1
H12 N2 C10 H13 273.7 271.1
C C10 N2 H12 156.5 151.1
N2 C10 C C12 235.7 240.0
N2 C10 C H13 118.7 120.0
C12 C10 C H13 243.0 240.0
C C10 C12 C13 302.2 175.0
C C10 C12 H14 62.2 295.0
C C10 C12 H15 182.2 55.0
O C C10 OXT 179.4 179.9
C10 C OXT HXT 179.4 180.0
C12 C10 N2 H12 30.9 31.1
N2 C10 C12 C 124.3 120.0
N2 C10 C12 H13 241.3 240.0
C C10 C12 H13 117.0 120.0
C12 C10 C O 108.4 120.0
C12 C10 C OXT 289.0 300.0
C13 C12 C10 H14 240.0 240.0
C13 C12 C10 H15 120.0 120.0
C10 C12 C13 C14 96.7 90.1
C10 C12 C13 C15 278.7 269.7
H14 C12 C10 H15 240.0 240.1
H13 C10 N2 H12 273.7 271.1
N2 C10 H13 C 240.4 240.0
N2 C10 H13 C12 119.5 120.0
C C10 H13 C12 239.1 239.9
H13 C10 C O 225.3 240.0
H13 C10 C OXT 45.9 60.1
H13 C10 C12 C13 185.2 55.0
H13 C10 C12 H14 305.3 175.0
H13 C10 C12 H15 65.2 294.9
O C C10 C12 108.4 120.0
O C C10 H13 225.3 240.0
C10 C O OXT 180.6 180.1
O C OXT HXT 360.0 0.0
OXT C C10 C12 289.0 300.0
OXT C C10 H13 45.9 60.1
C10 C OXT O 179.4 179.9
C13 C12 C10 H13 185.2 55.0
C10 C12 C13 H14 120.0 120.0
C10 C12 C13 H15 240.0 240.0
H14 C12 C13 H15 120.0 120.0
C14 C13 C12 C15 178.0 180.4
C12 C13 C14 C16 182.0 179.9
C12 C13 C14 H16 2.0 360.0
C12 C13 C15 C17 177.4 180.0
C12 C13 C15 H17 357.4 0.0
H14 C12 C10 H13 305.3 175.0
C10 C12 H14 C13 238.2 240.0
C10 C12 H14 H15 119.1 119.9
C13 C12 H14 H15 240.9 239.9
H14 C12 C13 C14 336.8 330.1
H14 C12 C13 C15 158.7 149.7
H15 C12 C10 H13 65.2 294.9
C10 C12 H15 C13 121.8 120.0
C10 C12 H15 H14 241.0 240.1
C13 C12 H15 H14 119.1 120.1
H15 C12 C13 C14 216.7 210.0
H15 C12 C13 C15 38.7 29.7
C14 C13 C12 H14 336.8 330.1
C14 C13 C12 H15 216.7 210.0
C12 C13 C14 C15 181.9 179.6
C14 C13 C15 C17 359.4 359.7
C14 C13 C15 H17 179.4 179.7
C16 C14 C13 H16 180.0 180.0
C13 C14 C16 C18 0.3 360.0
C13 C14 C16 H18 180.3 179.9
C15 C13 C12 H14 158.7 149.7
C15 C13 C12 H15 38.7 29.7
C12 C13 C15 C14 178.1 180.4
C15 C13 C14 C16 0.1 0.3
C15 C13 C14 H16 180.1 180.3
C17 C15 C13 H17 180.0 180.0
C13 C15 C17 C18 0.7 0.1
C13 C15 C17 H19 180.7 180.0
C16 C14 C13 C15 0.1 0.3
C13 C14 C16 H16 180.0 180.0
C18 C16 C14 H18 180.0 180.0
C14 C16 C18 C17 359.8 359.8
C14 C16 C18 H20 179.8 180.0
H16 C14 C13 C15 180.1 180.3
C13 C14 H16 C16 180.0 180.0
H16 C14 C16 C18 180.3 179.9
H16 C14 C16 H18 0.3 359.9
C13 C15 C17 H17 180.0 180.0
C16 C18 C17 C15 359.8 0.2
C18 C17 C15 H19 180.0 180.1
C15 C17 C18 H20 179.7 180.0
C13 C15 H17 C17 180.0 180.0
H17 C15 C17 C18 180.7 180.1
H17 C15 C17 H19 0.7 360.0
C18 C16 C14 H16 180.3 179.9
C14 C16 C18 H18 180.0 180.0
C15 C17 C18 C16 359.8 0.2
C16 C18 C17 H19 179.8 180.3
C17 C18 C16 H20 180.0 179.8
H18 C16 C14 H16 0.3 359.9
C14 C16 H18 C18 180.0 180.0
H18 C16 C18 C17 179.7 179.8
H18 C16 C18 H20 359.7 360.0
C18 C17 C15 H17 180.7 180.1
C15 C17 C18 H19 180.0 179.9
C17 C18 C16 H18 179.7 179.8
C16 C18 C17 H20 180.0 180.2
H19 C17 C15 H17 0.7 360.0
C15 C17 H19 C18 180.0 180.1
H19 C17 C18 H20 359.8 0.1
H20 C18 C16 H18 359.7 360.0
C16 C18 H20 C17 180.0 179.8
H20 C18 C17 H19 359.8 0.1
CA N H2 H 239.9 236.1
H2 N CA C2 300.0 60.0
H2 N CA C3 177.3 300.0
H2 N CA HA 57.7 180.0