PDB Chemical Component PU9

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PU9

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
CL	C13	1.770	1.735
C13	C15	1.406	1.387
C13	C12	1.417	1.383
C15	O3	1.425	1.360
C15	C17	1.375	1.389
O3	C20	1.320	1.429
C20	H201	1.115	1.090
C20	H202	1.115	1.088
C20	H203	1.115	1.090
C17	O2	1.436	1.361
C17	C16	1.376	1.390
O2	C19	1.456	1.429
C19	H191	1.115	1.091
C19	H192	1.115	1.089
C19	H193	1.115	1.089
C16	O1	1.382	1.360
C16	C14	1.402	1.387
O1	C18	1.445	1.430
C18	H181	1.115	1.090
C18	H182	1.115	1.089
C18	H183	1.115	1.090
C14	C12	1.412	1.382
C14	H14	1.103	1.080
C12	C6	1.538	1.506
C6	C5	1.523	1.505
C6	H6C1	1.115	1.089
C6	H6C2	1.115	1.090
C5	N3	1.339	1.302
C5	N4	1.364	1.362
N3	C2	1.331	1.354
C2	C3	1.369	1.405
C2	C1	1.359	1.405
C3	N5	1.442	1.383
C3	N2	1.331	1.330
N5	H5N1	1.020	0.970
N5	H5N2	1.020	0.970
C1	N1	1.334	1.329
C1	N4	1.315	1.372
N1	C4	1.345	1.316
C4	N2	1.345	1.320
C4	H4	1.103	1.081
N4	C7	1.464	1.465
C7	C8	1.532	1.529
C7	H7C1	1.115	1.089
C7	H7C2	1.115	1.090
C8	C9	1.523	1.530
C8	H8C1	1.115	1.090
C8	H8C2	1.115	1.090
C9	C10	1.535	1.472
C9	H9C1	1.115	1.089
C9	H9C2	1.115	1.090
C10	C11	1.185	1.175
C11	H11	1.090	1.050

Bond Angles for PU9

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CL	C13	C15	120.3	120.0
CL	C13	C12	121.6	120.0
C15	C13	C12	118.0	120.1
C13	C15	O3	129.9	120.1
C13	C15	C17	121.9	119.9
C13	C12	C14	119.1	120.2
C13	C12	C6	123.1	119.9
O3	C15	C17	108.1	120.0
C15	O3	C20	160.7	106.8
C15	C17	O2	116.1	120.1
C15	C17	C16	120.9	119.8
O3	C20	H201	160.7	109.4
O3	C20	H202	95.6	109.5
O3	C20	H203	95.6	109.4
H201	C20	H202	95.6	109.5
H201	C20	H203	95.6	109.5
H202	C20	H203	108.7	109.5
O2	C17	C16	123.1	120.1
C17	O2	C19	121.0	106.8
C17	C16	O1	116.6	120.1
C17	C16	C14	119.1	119.9
O2	C19	H191	121.0	109.5
O2	C19	H192	108.1	109.4
O2	C19	H193	108.1	109.5
H191	C19	H192	108.1	109.4
H191	C19	H193	108.1	109.5
H192	C19	H193	101.8	109.5
O1	C16	C14	124.3	120.0
C16	O1	C18	122.6	106.8
C16	C14	C12	121.0	120.1
C16	C14	H14	119.5	119.9
O1	C18	H181	122.6	109.4
O1	C18	H182	107.5	109.4
O1	C18	H183	107.5	109.5
H181	C18	H182	107.5	109.5
H181	C18	H183	107.6	109.5
H182	C18	H183	102.3	109.5
C12	C14	H14	119.5	120.0
C14	C12	C6	117.8	120.0
C12	C6	C5	112.7	109.5
C12	C6	H6C1	111.0	109.5
C12	C6	H6C2	111.1	109.4
C5	C6	H6C1	111.1	109.5
C5	C6	H6C2	111.0	109.5
C6	C5	N3	124.2	125.0
C6	C5	N4	125.6	125.1
H6C1	C6	H6C2	99.3	109.4
N3	C5	N4	110.2	109.9
C5	N3	C2	107.1	109.5
C5	N4	C1	104.9	107.5
C5	N4	C7	128.1	126.3
N3	C2	C3	135.3	134.7
N3	C2	C1	107.1	107.1
C3	C2	C1	117.5	118.2
C2	C3	N5	122.6	120.8
C2	C3	N2	118.2	118.4
C2	C1	N1	125.4	119.1
C2	C1	N4	110.7	106.0
N5	C3	N2	119.2	120.7
C3	N5	H5N1	122.6	120.1
C3	N5	H5N2	119.2	119.9
C3	N2	C4	121.7	121.1
H5N1	N5	H5N2	118.2	120.0
N1	C1	N4	123.8	134.9
C1	N1	C4	114.6	120.6
C1	N4	C7	127.0	126.3
N1	C4	N2	122.6	122.5
N1	C4	H4	118.7	118.7
N2	C4	H4	118.7	118.7
N4	C7	C8	110.6	109.5
N4	C7	H7C1	111.8	109.5
N4	C7	H7C2	111.8	109.4
C8	C7	H7C1	111.8	109.5
C8	C7	H7C2	111.8	109.4
C7	C8	C9	111.4	109.5
C7	C8	H8C1	111.5	109.5
C7	C8	H8C2	111.5	109.5
H7C1	C7	H7C2	98.6	109.5
C9	C8	H8C1	111.5	109.4
C9	C8	H8C2	111.5	109.5
C8	C9	C10	114.5	109.5
C8	C9	H9C1	110.4	109.5
C8	C9	H9C2	110.3	109.4
H8C1	C8	H8C2	98.9	109.5
C10	C9	H9C1	110.4	109.5
C10	C9	H9C2	110.4	109.4
C9	C10	C11	175.6	180.0
H9C1	C9	H9C2	99.9	109.5
C10	C11	H11	180.0	180.0

Torsion Angles for PU9

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C15	C13	CL	C12	177.9	180.0
CL	C13	C15	O3	0.3	0.0
CL	C13	C15	C17	182.1	179.7
CL	C13	C12	C14	177.3	180.0
CL	C13	C12	C6	359.2	0.0
CL	C13	C15	C12	182.0	180.0
C15	C13	C12	C14	359.4	0.0
C15	C13	C12	C6	181.2	180.0
O3	C15	C13	C17	178.2	180.3
C13	C15	O3	C20	262.2	267.1
C13	C15	C17	O2	180.8	180.0
C13	C15	C17	C16	0.5	0.5
CL	C13	C12	C15	178.0	180.0
C12	C13	C15	O3	178.3	180.1
C12	C13	C15	C17	0.0	359.7
C16	C14	C12	C13	0.8	360.0
C13	C12	C14	H14	180.8	180.1
C14	C12	C13	C6	178.1	180.0
C13	C12	C6	C5	304.2	270.0
C13	C12	C6	H6C1	178.9	30.1
C13	C12	C6	H6C2	69.4	150.0
O3	C15	C13	C12	178.3	180.1
C13	C15	O3	C17	181.6	179.7
O3	C15	C17	O2	2.2	359.7
O3	C15	C17	C16	181.9	180.2
C15	O3	C20	H201	179.9	181.7
C15	O3	C20	H202	54.7	301.7
C15	O3	C20	H203	305.3	61.7
C17	C15	C13	C12	0.0	359.7
C13	C15	C17	O3	178.6	180.3
C17	C15	O3	C20	80.6	87.5
O2	C17	C15	C16	180.3	179.5
C15	C17	O2	C19	244.7	89.3
C15	C17	C16	O1	180.0	179.8
C15	C17	C16	C14	359.6	359.5
C20	O3	C15	C17	80.6	87.5
H201	C20	O3	H202	125.2	240.0
H201	C20	O3	H203	234.6	119.9
H202	C20	O3	H203	109.4	240.0
O3	C20	H201	H202	234.8	120.0
O3	C20	H201	H203	125.4	240.1
H202	C20	H201	H203	250.6	120.1
O3	C20	H202	H201	164.2	240.0
O3	C20	H202	H203	262.1	120.0
H201	C20	H202	H203	97.9	240.0
O3	C20	H203	H201	195.7	119.9
O3	C20	H203	H202	97.9	240.0
H201	C20	H203	H202	262.2	120.0
C15	C17	O2	C16	179.7	180.5
O2	C17	C16	O1	359.7	0.3
O2	C17	C16	C14	179.3	180.0
C17	O2	C19	H191	180.0	177.9
C17	O2	C19	H192	54.7	297.8
C17	O2	C19	H193	305.2	57.8
C15	C17	C16	O2	180.4	179.5
C16	C17	O2	C19	65.1	268.8
O1	C16	C17	C14	180.4	180.3
C17	C16	O1	C18	191.1	179.7
C17	C16	C14	C12	359.7	0.3
C17	C16	C14	H14	179.7	180.2
C19	O2	C17	C16	65.1	268.8
H191	C19	O2	H192	125.3	240.1
H191	C19	O2	H193	234.8	120.1
H192	C19	O2	H193	109.5	240.0
O2	C19	H191	H192	234.7	119.9
O2	C19	H191	H193	125.2	239.9
H192	C19	H191	H193	250.5	120.0
O2	C19	H192	H191	132.6	240.1
O2	C19	H192	H193	246.3	120.1
H191	C19	H192	H193	113.8	240.0
O2	C19	H193	H191	227.5	120.0
O2	C19	H193	H192	113.7	240.0
H191	C19	H193	H192	246.2	119.9
C17	C16	O1	C14	179.6	179.7
O1	C16	C14	C12	179.3	180.0
O1	C16	C14	H14	359.3	359.9
C16	O1	C18	H181	180.0	180.0
C16	O1	C18	H182	54.8	300.0
C16	O1	C18	H183	305.3	60.0
C13	C12	C14	C16	0.8	360.0
C17	C16	C14	O1	180.4	180.3
C14	C16	O1	C18	11.5	0.0
C12	C14	C16	H14	180.0	180.1
C16	C14	C12	C6	179.0	180.0
C18	O1	C16	C14	11.5	0.0
H181	C18	O1	H182	125.2	240.0
H181	C18	O1	H183	234.7	120.0
H182	C18	O1	H183	109.5	240.0
O1	C18	H181	H182	234.8	120.0
O1	C18	H181	H183	125.3	240.0
H182	C18	H181	H183	250.5	120.1
O1	C18	H182	H181	133.8	240.1
O1	C18	H182	H183	246.9	120.0
H181	C18	H182	H183	113.1	240.0
O1	C18	H183	H181	226.1	119.9
O1	C18	H183	H182	113.1	240.0
H181	C18	H183	H182	246.9	120.1
C13	C12	C14	C6	181.8	180.0
C16	C14	C12	H14	180.0	179.9
C14	C12	C6	C5	126.0	90.0
C14	C12	C6	H6C1	0.7	210.1
C14	C12	C6	H6C2	251.3	330.0
C16	C14	H14	C12	180.0	180.1
H14	C14	C12	C6	359.0	0.1
C13	C12	C6	C14	178.2	180.0
C6	C12	C14	H14	359.0	0.1
C5	C6	C12	H6C1	125.3	239.9
C5	C6	C12	H6C2	234.7	120.0
C12	C6	C5	N3	117.4	90.1
C12	C6	C5	N4	300.4	269.7
H6C1	C6	C12	H6C2	109.5	240.1
C12	C6	C5	H6C1	234.7	120.1
C12	C6	C5	H6C2	125.3	240.0
H6C1	C6	C5	H6C2	250.5	119.9
N3	C5	C6	N4	176.9	180.4
C6	C5	N3	C2	181.4	180.0
C6	C5	N4	C1	177.6	179.9
C6	C5	N4	C7	357.0	360.0
C12	C6	H6C1	C5	126.2	239.9
C12	C6	H6C1	H6C2	243.1	119.9
C5	C6	H6C1	H6C2	116.9	240.0
H6C1	C6	C5	N3	242.6	330.0
H6C1	C6	C5	N4	65.7	149.6
C12	C6	H6C2	C5	233.8	120.0
C12	C6	H6C2	H6C1	116.9	240.0
C5	C6	H6C2	H6C1	243.1	120.0
H6C2	C6	C5	N3	352.1	210.1
H6C2	C6	C5	N4	175.1	29.7
N3	C5	C6	H6C1	242.6	330.0
N3	C5	C6	H6C2	352.1	210.1
C6	C5	N3	N4	182.6	179.7
N3	C5	N4	C1	0.3	359.5
N3	C5	N4	C7	179.7	179.6
C5	N3	C2	C3	180.9	180.0
C5	N3	C2	C1	1.8	360.0
N4	C5	C6	H6C1	65.7	149.6
N4	C5	C6	H6C2	175.1	29.7
C6	C5	N4	N3	177.3	180.3
N4	C5	N3	C2	358.7	0.3
C2	C1	N4	C5	0.9	0.4
N1	C1	N4	C5	179.0	180.1
C1	N4	C5	C7	180.5	179.9
C5	N4	C7	C8	258.4	269.8
C5	N4	C7	H7C1	133.2	29.9
C5	N4	C7	H7C2	23.7	149.9
C2	N3	C5	N4	358.7	0.3
C3	C2	N3	C1	179.1	180.0
N3	C2	C3	N5	360.0	360.0
N3	C2	C3	N2	182.0	180.0
N3	C2	C1	N1	180.3	180.0
N3	C2	C1	N4	358.3	359.7
N3	C2	C3	C1	181.0	180.0
C3	C2	C1	N1	1.0	0.0
C3	C2	C1	N4	179.0	179.7
N5	C3	C2	N2	178.0	180.0
C2	C3	N5	H5N1	180.0	180.0
C2	C3	N5	H5N2	2.0	0.0
C2	C3	N2	C4	358.1	0.0
C5	N4	C1	C2	0.9	0.4
N3	C2	C1	C3	179.3	180.0
C1	C2	C3	N5	179.0	180.0
C1	C2	C3	N2	1.0	360.0
N1	C1	C2	N4	181.9	180.3
C2	C1	N1	C4	358.1	0.0
C2	C1	N4	C7	181.4	180.3
N5	C3	C2	C1	179.0	180.0
C2	C3	N5	N2	182.0	180.0
N5	C3	N2	C4	180.0	180.0
H5N1	N5	C3	H5N2	178.0	179.9
N2	C3	C2	C1	1.0	360.0
C2	C3	N2	N5	178.1	180.0
N2	C3	N5	H5N1	358.0	360.0
N2	C3	N5	H5N2	180.0	180.0
N1	C4	N2	C3	0.9	0.0
C3	N2	C4	H4	180.9	180.0
H5N1	N5	C3	N2	358.0	360.0
C3	N5	H5N1	H5N2	182.0	180.1
H5N2	N5	C3	N2	180.0	180.0
C3	N5	H5N2	H5N1	178.1	179.9
C5	N4	C1	N1	179.0	180.1
C2	C1	N1	N4	177.8	179.6
N1	C1	N4	C7	359.5	360.0
C1	N1	C4	N2	1.0	360.0
C1	N1	C4	H4	181.0	180.0
C5	N4	C1	C7	179.5	180.1
C2	C1	N4	N1	181.9	180.4
N4	C1	N1	C4	180.2	180.4
C1	N4	C7	C8	77.8	90.0
C1	N4	C7	H7C1	312.5	210.0
C1	N4	C7	H7C2	203.1	330.0
C3	N2	C4	N1	0.9	0.0
C4	N1	C1	N4	180.2	180.4
N2	C4	N1	H4	180.0	179.9
N1	C4	N2	H4	180.0	180.1
N1	C4	H4	N2	180.0	179.9
C5	N4	C7	C1	180.6	179.9
C8	C7	N4	H7C1	125.3	240.0
C8	C7	N4	H7C2	234.7	119.9
N4	C7	C8	C9	63.6	180.0
N4	C7	C8	H8C1	298.3	300.0
N4	C7	C8	H8C2	188.8	60.0
H7C1	C7	N4	H7C2	109.4	240.0
N4	C7	C8	H7C1	234.8	120.0
N4	C7	C8	H7C2	125.3	240.1
H7C1	C7	C8	H7C2	250.5	120.1
C9	C8	C7	H8C1	125.2	240.0
C9	C8	C7	H8C2	234.7	120.0
C7	C8	C9	C10	75.9	180.0
C7	C8	C9	H9C1	310.6	60.0
C7	C8	C9	H9C2	201.1	300.0
H8C1	C8	C7	H8C2	109.5	240.0
N4	C7	H7C1	C8	124.6	240.0
N4	C7	H7C1	H7C2	242.3	120.0
C8	C7	H7C1	H7C2	117.7	240.0
H7C1	C7	C8	C9	188.8	60.0
H7C1	C7	C8	H8C1	63.6	180.0
H7C1	C7	C8	H8C2	314.1	300.0
N4	C7	H7C2	C8	235.4	120.0
N4	C7	H7C2	H7C1	117.7	240.0
C8	C7	H7C2	H7C1	242.3	120.1
H7C2	C7	C8	C9	298.3	300.0
H7C2	C7	C8	H8C1	173.1	59.9
H7C2	C7	C8	H8C2	63.6	179.9
C9	C8	C7	H7C1	188.8	60.0
C9	C8	C7	H7C2	298.3	300.0
C7	C8	C9	H8C1	234.8	120.0
C7	C8	C9	H8C2	125.3	240.0
H8C1	C8	C9	H8C2	250.5	120.0
C10	C9	C8	H9C1	125.3	120.0
C10	C9	C8	H9C2	234.8	240.0
C8	C9	C10	C11	19.1	351.7
H9C1	C9	C8	H9C2	109.5	120.0
H8C1	C8	C7	H7C1	63.6	180.0
H8C1	C8	C7	H7C2	173.1	59.9
C7	C8	H8C1	C9	125.2	240.0
C7	C8	H8C1	H8C2	242.6	120.0
C9	C8	H8C1	H8C2	117.4	240.0
H8C1	C8	C9	C10	201.1	60.0
H8C1	C8	C9	H9C1	75.8	300.0
H8C1	C8	C9	H9C2	326.3	180.0
H8C2	C8	C7	H7C1	314.1	300.0
H8C2	C8	C7	H7C2	63.6	179.9
C7	C8	H8C2	C9	234.8	120.0
C7	C8	H8C2	H8C1	117.4	240.0
C9	C8	H8C2	H8C1	242.6	120.0
H8C2	C8	C9	C10	310.6	300.1
H8C2	C8	C9	H9C1	185.3	180.0
H8C2	C8	C9	H9C2	75.8	60.0
C10	C9	C8	H8C1	201.1	60.0
C10	C9	C8	H8C2	310.6	300.1
C8	C9	C10	H9C1	234.7	239.9
C8	C9	C10	H9C2	125.2	120.0
H9C1	C9	C10	H9C2	250.5	240.0
C9	C10	C11	H11	73.9	298.2
H9C1	C9	C8	H8C1	75.8	300.0
H9C1	C9	C8	H8C2	185.3	180.0
C8	C9	H9C1	C10	127.6	120.0
C8	C9	H9C1	H9C2	243.8	240.0
C10	C9	H9C1	H9C2	116.2	120.0
H9C1	C9	C10	C11	144.4	111.8
H9C2	C9	C8	H8C1	326.3	180.0
H9C2	C9	C8	H8C2	75.8	60.0
C8	C9	H9C2	C10	232.4	240.0
C8	C9	H9C2	H9C1	116.2	120.0
C10	C9	H9C2	H9C1	243.8	240.0
H9C2	C9	C10	C11	253.9	231.8
C11	C10	C9	H9C1	144.4	111.8
C11	C10	C9	H9C2	253.9	231.8