PDB Chemical Component PU5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PU5

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C18 C17 1.537 1.530
C18 H181 1.115 1.090
C18 H182 1.115 1.090
C18 H183 1.115 1.090
C17 C16 1.348 1.530
C17 H171 1.103 1.089
C17 H172 1.116 1.089
C16 C15 1.527 1.530
C16 H161 1.103 1.090
C16 H162 1.115 1.090
C15 N2 1.472 1.464
C15 H151 1.115 1.090
C15 H152 1.115 1.089
N2 C12 1.317 1.371
N2 C10 1.325 1.362
C12 N4 1.336 1.328
C12 C11 1.459 1.405
N4 C14 1.348 1.316
C14 N3 1.353 1.320
C14 H14 1.103 1.080
C9 C10 1.507 1.506
C9 C6 1.512 1.507
C9 H9C1 1.115 1.090
C9 H9C2 1.115 1.090
N3 C13 1.352 1.329
C11 C13 1.440 1.405
C11 N1 1.326 1.355
C13 N5 1.333 1.384
N5 H5N1 1.019 0.970
N5 H5N2 1.019 0.970
N1 C10 1.348 1.301
C1 C6 1.405 1.382
C1 C2 1.387 1.383
C1 H1 1.103 1.080
C6 C5 1.381 1.381
C5 C4 1.375 1.387
C5 H5 1.103 1.080
C2 C3 1.381 1.381
C2 H2 1.103 1.080
C3 C4 1.388 1.387
C3 H3 1.103 1.081
C4 O1 1.369 1.358
O1 C7 1.432 1.429
C7 H7C1 1.115 1.089
C7 H7C2 1.115 1.090
C7 H7C3 1.115 1.090

Bond Angles for PU5

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C17 C18 H181 122.0 109.4
C17 C18 H182 107.7 109.4
C17 C18 H183 107.7 109.5
C18 C17 C16 122.0 109.5
C18 C17 H171 119.0 109.5
C18 C17 H172 107.7 109.5
H181 C18 H182 107.7 109.5
H181 C18 H183 107.8 109.5
H182 C18 H183 102.1 109.5
C16 C17 H171 119.0 109.5
C16 C17 H172 107.8 109.5
C17 C16 C15 118.5 109.5
C17 C16 H161 120.8 109.5
C17 C16 H162 108.9 109.5
H171 C17 H172 51.1 109.4
C15 C16 H161 120.8 109.4
C15 C16 H162 109.0 109.5
C16 C15 N2 108.1 109.5
C16 C15 H151 112.7 109.4
C16 C15 H152 112.7 109.5
H161 C16 H162 50.6 109.5
N2 C15 H151 112.7 109.5
N2 C15 H152 112.7 109.5
C15 N2 C12 124.6 126.3
C15 N2 C10 126.4 126.3
H151 C15 H152 97.7 109.4
C12 N2 C10 109.0 107.5
N2 C12 N4 134.2 135.0
N2 C12 C11 105.4 106.0
N2 C10 C9 123.3 125.1
N2 C10 N1 111.5 110.0
N4 C12 C11 120.4 119.0
C12 N4 C14 119.3 120.8
C12 C11 C13 116.9 118.2
C12 C11 N1 107.6 107.1
N4 C14 N3 123.9 122.4
N4 C14 H14 118.1 118.8
N3 C14 H14 118.0 118.8
C14 N3 C13 120.4 121.2
C10 C9 C6 110.4 109.5
C10 C9 H9C1 111.9 109.4
C10 C9 H9C2 111.8 109.5
C9 C10 N1 125.0 124.9
C6 C9 H9C1 111.9 109.4
C6 C9 H9C2 111.9 109.5
C9 C6 C1 119.2 119.9
C9 C6 C5 119.1 120.0
H9C1 C9 H9C2 98.5 109.4
N3 C13 C11 118.9 118.4
N3 C13 N5 122.9 120.8
C13 C11 N1 135.5 134.7
C11 C13 N5 118.1 120.8
C11 N1 C10 106.4 109.4
C13 N5 H5N1 118.2 120.0
C13 N5 H5N2 122.9 120.0
H5N1 N5 H5N2 118.9 120.0
C6 C1 C2 119.0 120.1
C6 C1 H1 120.5 120.0
C1 C6 C5 121.7 120.0
C2 C1 H1 120.5 119.9
C1 C2 C3 119.4 120.0
C1 C2 H2 120.3 120.0
C6 C5 C4 118.1 120.0
C6 C5 H5 120.9 120.0
C4 C5 H5 121.0 120.0
C5 C4 C3 121.3 119.9
C5 C4 O1 117.3 120.1
C3 C2 H2 120.3 120.0
C2 C3 C4 120.5 120.0
C2 C3 H3 119.7 120.0
C4 C3 H3 119.7 120.0
C3 C4 O1 121.3 120.0
C4 O1 C7 123.1 106.9
O1 C7 H7C1 123.1 109.6
O1 C7 H7C2 107.4 109.5
O1 C7 H7C3 107.4 109.4
H7C1 C7 H7C2 107.4 109.4
H7C1 C7 H7C3 107.3 109.5
H7C2 C7 H7C3 102.4 109.5

Torsion Angles for PU5

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H181 C18 C17 H182 125.2 120.0
H181 C18 C17 H183 234.7 240.0
H182 C18 C17 H183 109.4 120.0
C16 C17 C18 H171 180.0 120.0
C16 C17 C18 H172 125.3 240.0
C18 C17 C16 C15 79.7 180.0
C18 C17 C16 H161 259.7 60.0
C18 C17 C16 H162 314.4 300.0
H171 C17 C18 H172 305.3 119.9
C17 C18 H181 H182 234.8 240.0
C17 C18 H181 H183 125.3 120.0
H181 C18 C17 C16 180.0 60.0
H181 C18 C17 H171 359.9 300.0
H181 C18 C17 H172 54.7 180.0
H182 C18 H181 H183 250.5 239.9
C17 C18 H182 H181 133.4 120.0
C17 C18 H182 H183 246.7 240.0
H182 C18 C17 C16 54.7 300.0
H182 C18 C17 H171 234.7 180.0
H182 C18 C17 H172 289.4 60.0
H181 C18 H182 H183 113.3 120.0
C17 C18 H183 H181 226.6 240.1
C17 C18 H183 H182 113.3 120.0
H183 C18 C17 C16 305.3 180.0
H183 C18 C17 H171 125.3 59.9
H183 C18 C17 H172 180.0 300.0
H181 C18 H183 H182 246.7 239.9
C16 C17 C18 H181 180.0 60.0
C16 C17 C18 H182 54.7 300.0
C16 C17 C18 H183 305.3 180.0
C18 C17 C16 H171 180.0 240.0
C18 C17 C16 H172 234.7 120.0
H171 C17 C16 H172 54.8 240.0
C15 C16 C17 H161 180.0 120.0
C15 C16 C17 H162 125.3 240.0
C17 C16 C15 N2 76.0 180.0
C17 C16 C15 H151 201.3 60.0
C17 C16 C15 H152 310.7 300.0
H161 C16 C17 H162 305.3 120.0
H171 C17 C18 H181 359.9 300.0
H171 C17 C18 H182 234.7 180.0
H171 C17 C18 H183 125.3 59.9
C18 C17 H171 C16 180.0 120.0
C18 C17 H171 H172 90.0 240.1
C16 C17 H171 H172 270.0 120.0
H171 C17 C16 C15 259.7 300.0
H171 C17 C16 H161 79.7 180.0
H171 C17 C16 H162 134.4 60.0
H172 C17 C18 H181 54.7 180.0
H172 C17 C18 H182 289.4 60.0
H172 C17 C18 H183 180.0 300.0
C18 C17 H172 C16 133.4 240.0
C18 C17 H172 H171 246.7 119.9
C16 C17 H172 H171 113.3 240.0
H172 C17 C16 C15 205.0 60.0
H172 C17 C16 H161 24.9 300.0
H172 C17 C16 H162 79.7 180.0
C15 C16 C17 H171 259.7 300.0
C15 C16 C17 H172 205.0 60.0
C17 C16 C15 H161 180.0 240.0
C17 C16 C15 H162 234.7 120.0
H161 C16 C15 H162 54.7 240.0
N2 C15 C16 H151 234.7 120.0
N2 C15 C16 H152 125.3 240.0
C16 C15 N2 C12 81.8 269.8
C16 C15 N2 C10 260.7 90.0
H151 C15 C16 H152 250.6 119.9
H161 C16 C17 H171 79.7 180.0
H161 C16 C17 H172 24.9 300.0
C17 C16 H161 C15 180.0 120.0
C17 C16 H161 H162 90.0 240.0
C15 C16 H161 H162 270.0 120.0
H161 C16 C15 N2 256.0 300.0
H161 C16 C15 H151 21.3 180.0
H161 C16 C15 H152 130.7 60.0
H162 C16 C17 H171 134.4 60.0
H162 C16 C17 H172 79.7 180.0
C17 C16 H162 C15 130.7 239.9
C17 C16 H162 H161 245.3 120.0
C15 C16 H162 H161 114.7 240.1
H162 C16 C15 N2 201.3 60.0
H162 C16 C15 H151 326.5 299.9
H162 C16 C15 H152 76.0 180.0
N2 C15 C16 H161 256.0 300.0
N2 C15 C16 H162 201.3 60.0
C16 C15 N2 H151 125.3 240.0
C16 C15 N2 H152 234.7 120.0
H151 C15 N2 H152 109.5 240.0
C12 N2 C15 C10 181.2 179.8
C15 N2 C12 N4 0.2 0.6
C15 N2 C12 C11 177.9 179.8
C15 N2 C10 C9 0.1 0.1
C15 N2 C10 N1 183.6 180.0
H151 C15 C16 H161 21.3 180.0
H151 C15 C16 H162 326.5 299.9
C16 C15 H151 N2 237.3 120.1
C16 C15 H151 H152 118.6 240.1
N2 C15 H151 H152 241.3 120.0
H151 C15 N2 C12 316.6 29.8
H151 C15 N2 C10 135.4 210.0
H152 C15 C16 H161 130.7 60.0
H152 C15 C16 H162 76.0 180.0
C16 C15 H152 N2 122.7 239.9
C16 C15 H152 H151 241.4 119.9
N2 C15 H152 H151 118.7 240.0
H152 C15 N2 C12 207.1 149.8
H152 C15 N2 C10 25.9 329.9
C12 N2 C15 H151 316.6 29.8
C12 N2 C15 H152 207.1 149.8
C15 N2 C12 C10 179.0 180.2
C12 N2 C10 C9 179.1 180.2
C12 N2 C10 N1 2.6 0.2
N4 C12 N2 C11 182.3 180.8
N2 C12 N4 C14 181.4 179.6
N2 C12 C11 C13 177.7 180.1
N2 C12 C11 N1 359.3 0.3
C10 N2 C15 H151 135.4 210.0
C10 N2 C15 H152 25.9 329.9
C15 N2 C10 C12 181.0 179.8
C10 N2 C12 N4 181.2 180.4
C10 N2 C12 C11 358.9 359.7
N2 C10 C9 C6 287.0 89.9
N2 C10 C9 H9C1 52.2 330.0
N2 C10 C9 H9C2 161.7 210.0
C9 C10 N2 N1 176.5 180.0
C11 N1 C10 N2 357.1 0.0
N4 C12 N2 C10 181.2 180.4
N2 C12 N4 C11 177.4 179.2
N4 C12 C11 C13 355.8 359.5
N4 C12 C11 N1 177.4 179.7
C12 N4 C14 N3 355.8 359.8
C12 N4 C14 H14 175.8 179.8
C11 C12 N2 C10 358.9 359.7
N2 C12 C11 N4 181.9 180.6
C11 C12 N4 C14 4.0 0.4
N3 C13 C11 C12 4.5 0.3
C13 C11 C12 N1 178.4 179.8
C12 C11 C13 N5 182.3 180.3
C12 C11 N1 C10 2.1 359.8
C14 N4 C12 C11 4.0 0.4
N3 C14 N4 H14 180.0 180.0
N4 C14 N3 C13 4.7 360.0
N4 C14 N3 H14 180.0 180.0
C14 N3 C13 C11 355.2 360.0
C14 N3 C13 N5 177.6 180.0
N4 C14 H14 N3 180.0 180.0
H14 C14 N3 C13 184.7 180.0
N2 C10 C9 N1 183.9 180.0
C6 C9 C10 H9C1 234.7 120.0
C6 C9 C10 H9C2 125.3 239.9
C10 C9 C6 C1 142.9 90.1
C10 C9 C6 C5 320.5 269.8
H9C1 C9 C10 H9C2 250.5 120.0
C11 N1 C10 C9 180.6 180.0
C10 C9 C6 H9C1 125.3 240.0
C10 C9 C6 H9C2 234.7 120.1
C6 C9 C10 N1 103.1 270.0
H9C1 C9 C6 H9C2 109.5 240.0
C9 C6 C1 C2 178.9 180.0
C9 C6 C1 H1 358.9 360.0
C1 C6 C9 C5 182.4 180.3
C9 C6 C5 C4 182.6 179.8
C9 C6 C5 H5 2.6 0.2
C10 C9 H9C1 C6 235.6 120.0
C10 C9 H9C1 H9C2 117.8 240.0
H9C1 C9 C10 N1 228.3 150.0
C6 C9 H9C1 H9C2 242.2 120.0
H9C1 C9 C6 C1 17.7 210.0
H9C1 C9 C6 C5 195.3 29.8
C10 C9 H9C2 C6 124.4 239.9
C10 C9 H9C2 H9C1 242.2 120.0
H9C2 C9 C10 N1 337.8 30.1
C6 C9 H9C2 H9C1 117.8 240.0
H9C2 C9 C6 C1 268.2 330.0
H9C2 C9 C6 C5 85.8 149.7
C12 C11 C13 N3 4.5 0.3
C13 N3 C14 H14 184.7 180.0
N3 C13 C11 N1 182.3 180.0
C11 C13 N3 N5 177.7 180.0
N3 C13 N5 H5N1 357.7 0.0
N3 C13 N5 H5N2 180.0 180.0
C12 C11 C13 N1 182.2 180.3
N3 C13 C11 N5 182.2 180.0
C13 C11 N1 C10 184.2 180.0
C11 C13 N5 H5N1 180.0 180.0
C11 C13 N5 H5N2 2.3 360.0
N2 C10 N1 C11 357.1 0.0
C12 C11 N1 C13 177.9 179.7
C9 C10 N1 C11 180.6 180.0
N1 C11 C13 N5 0.1 360.0
N3 C13 N5 C11 177.7 180.0
N5 C13 C11 N1 0.1 360.0
H5N1 N5 C13 H5N2 177.7 180.0
C13 N5 H5N1 H5N2 182.2 180.0
C13 N5 H5N2 H5N1 177.7 180.0
N2 C10 N1 C9 176.5 180.0
N1 C10 C9 C6 103.1 270.0
N1 C10 C9 H9C1 228.3 150.0
N1 C10 C9 H9C2 337.8 30.1
C1 C6 C9 H9C1 17.7 210.0
C1 C6 C9 H9C2 268.2 330.0
C9 C6 C1 C5 177.5 179.7
C2 C1 C6 H1 180.0 180.1
C6 C1 C2 C3 359.3 359.9
C6 C1 C2 H2 179.3 179.9
C1 C6 C5 C4 0.1 359.5
C1 C6 C5 H5 180.1 179.9
C6 C1 C2 H1 180.0 179.9
C2 C1 C6 C5 1.4 0.3
C3 C2 C1 H2 180.0 180.0
C1 C2 C3 C4 358.5 0.0
C1 C2 C3 H3 178.5 180.0
C6 C1 H1 C2 180.0 180.1
H1 C1 C6 C5 181.4 180.2
H1 C1 C2 C3 179.3 180.0
H1 C1 C2 H2 359.3 0.0
C5 C6 C9 H9C1 195.3 29.8
C5 C6 C9 H9C2 85.8 149.7
C9 C6 C5 C1 182.5 180.3
C5 C6 C1 C2 1.4 0.3
C5 C6 C1 H1 181.4 180.2
C4 C5 C6 H5 180.0 179.6
C6 C5 C4 C3 357.7 0.4
C6 C5 C4 O1 181.5 180.2
C6 C5 C4 H5 180.0 180.4
C2 C3 C4 C5 3.1 359.8
C5 C4 C3 H3 183.0 179.9
C3 C4 C5 O1 176.2 180.2
C5 C4 O1 C7 194.1 180.2
C6 C5 H5 C4 180.0 179.6
H5 C5 C4 C3 177.7 180.1
H5 C5 C4 O1 1.5 359.8
C3 C2 C1 H1 179.3 180.0
C1 C2 C3 H2 180.0 180.0
C5 C4 C3 C2 3.1 359.8
C4 C3 C2 H3 180.0 180.1
C2 C3 C4 O1 179.1 180.0
H2 C2 C1 H1 359.3 0.0
C1 C2 H2 C3 180.0 180.0
H2 C2 C3 C4 178.5 180.0
H2 C2 C3 H3 358.5 359.9
C3 C4 C5 H5 177.7 180.1
C5 C4 C3 O1 184.0 179.8
C4 C3 C2 H2 178.5 180.0
C2 C3 C4 H3 180.0 179.9
C3 C4 O1 C7 17.9 359.9
H3 C3 C2 H2 358.5 359.9
C2 C3 H3 C4 180.0 180.1
H3 C3 C4 O1 359.1 0.1
O1 C4 C5 H5 1.5 359.8
C5 C4 O1 C3 176.2 180.2
O1 C4 C3 H3 359.1 0.1
C4 O1 C7 H7C1 180.0 180.0
C4 O1 C7 H7C2 54.7 300.0
C4 O1 C7 H7C3 305.2 60.0
H7C1 C7 O1 H7C2 125.3 240.0
H7C1 C7 O1 H7C3 234.8 120.1
H7C2 C7 O1 H7C3 109.5 240.0
O1 C7 H7C1 H7C2 234.7 120.0
O1 C7 H7C1 H7C3 125.2 240.0
H7C2 C7 H7C1 H7C3 250.5 120.0
O1 C7 H7C2 H7C1 134.2 239.9
O1 C7 H7C2 H7C3 247.1 119.9
H7C1 C7 H7C2 H7C3 112.9 240.0
O1 C7 H7C3 H7C1 225.8 120.1
O1 C7 H7C3 H7C2 112.9 240.0
H7C1 C7 H7C3 H7C2 247.1 120.0