PDB Chemical Component PU2
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PU2
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C18 |
O2 |
1.443 |
1.429 |
C18 |
H181 |
1.115 |
1.089 |
C18 |
H182 |
1.115 |
1.090 |
C18 |
H183 |
1.115 |
1.090 |
N2 |
C12 |
1.295 |
1.347 |
N2 |
C10 |
1.341 |
1.303 |
C12 |
N4 |
1.314 |
1.337 |
C12 |
C11 |
1.347 |
1.403 |
N4 |
C14 |
1.316 |
1.317 |
C14 |
N3 |
1.327 |
1.323 |
C14 |
F1 |
1.608 |
1.351 |
C9 |
C10 |
1.496 |
1.506 |
C9 |
C6 |
1.514 |
1.507 |
C9 |
H9C1 |
1.115 |
1.091 |
C9 |
H9C2 |
1.115 |
1.090 |
N3 |
C13 |
1.320 |
1.330 |
C11 |
C13 |
1.383 |
1.396 |
C11 |
N1 |
1.331 |
1.380 |
C13 |
N5 |
1.425 |
1.385 |
N5 |
H5N1 |
1.020 |
0.971 |
N5 |
H5N2 |
1.021 |
0.970 |
N1 |
C10 |
1.354 |
1.351 |
N1 |
H1 |
1.020 |
0.970 |
C1 |
C6 |
1.385 |
1.386 |
C1 |
C2 |
1.382 |
1.387 |
C1 |
O2 |
1.392 |
1.360 |
C6 |
C5 |
1.375 |
1.380 |
C5 |
C4 |
1.394 |
1.387 |
C5 |
H5 |
1.103 |
1.080 |
C2 |
C3 |
1.390 |
1.380 |
C2 |
H2 |
1.103 |
1.081 |
C3 |
C4 |
1.405 |
1.386 |
C3 |
H3 |
1.103 |
1.080 |
C4 |
O1 |
1.426 |
1.360 |
O1 |
C7 |
1.434 |
1.428 |
C7 |
H7C1 |
1.115 |
1.090 |
C7 |
H7C2 |
1.115 |
1.090 |
C7 |
H7C3 |
1.115 |
1.090 |
Bond Angles for PU2
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2 |
C18 |
H181 |
119.4 |
109.5 |
O2 |
C18 |
H182 |
108.7 |
109.4 |
O2 |
C18 |
H183 |
108.6 |
109.4 |
C18 |
O2 |
C1 |
119.4 |
106.8 |
H181 |
C18 |
H182 |
108.6 |
109.5 |
H181 |
C18 |
H183 |
108.6 |
109.5 |
H182 |
C18 |
H183 |
101.4 |
109.5 |
C12 |
N2 |
C10 |
105.7 |
109.8 |
N2 |
C12 |
N4 |
127.2 |
134.5 |
N2 |
C12 |
C11 |
110.1 |
106.8 |
N2 |
C10 |
C9 |
120.5 |
124.9 |
N2 |
C10 |
N1 |
111.0 |
110.1 |
N4 |
C12 |
C11 |
122.6 |
118.7 |
C12 |
N4 |
C14 |
114.8 |
120.5 |
C12 |
C11 |
C13 |
119.0 |
118.7 |
C12 |
C11 |
N1 |
108.8 |
106.1 |
N4 |
C14 |
N3 |
127.5 |
122.5 |
N4 |
C14 |
F1 |
115.5 |
118.8 |
N3 |
C14 |
F1 |
116.9 |
118.7 |
C14 |
N3 |
C13 |
116.8 |
121.0 |
C10 |
C9 |
C6 |
113.2 |
109.5 |
C10 |
C9 |
H9C1 |
110.8 |
109.5 |
C10 |
C9 |
H9C2 |
110.8 |
109.5 |
C9 |
C10 |
N1 |
128.4 |
124.9 |
C6 |
C9 |
H9C1 |
110.8 |
109.5 |
C6 |
C9 |
H9C2 |
110.8 |
109.5 |
C9 |
C6 |
C1 |
119.9 |
120.0 |
C9 |
C6 |
C5 |
119.7 |
120.0 |
H9C1 |
C9 |
H9C2 |
99.4 |
109.4 |
N3 |
C13 |
C11 |
119.2 |
118.5 |
N3 |
C13 |
N5 |
117.1 |
120.8 |
C13 |
C11 |
N1 |
132.1 |
135.2 |
C11 |
C13 |
N5 |
123.7 |
120.7 |
C11 |
N1 |
C10 |
104.4 |
107.1 |
C11 |
N1 |
H1 |
127.8 |
126.4 |
C13 |
N5 |
H5N1 |
123.7 |
120.0 |
C13 |
N5 |
H5N2 |
117.1 |
120.1 |
H5N1 |
N5 |
H5N2 |
119.2 |
120.0 |
C10 |
N1 |
H1 |
127.8 |
126.5 |
C6 |
C1 |
C2 |
122.5 |
120.0 |
C6 |
C1 |
O2 |
118.0 |
120.0 |
C1 |
C6 |
C5 |
120.4 |
120.0 |
C2 |
C1 |
O2 |
119.4 |
120.0 |
C1 |
C2 |
C3 |
117.9 |
120.0 |
C1 |
C2 |
H2 |
121.0 |
120.0 |
C6 |
C5 |
C4 |
117.8 |
120.0 |
C6 |
C5 |
H5 |
121.1 |
120.0 |
C4 |
C5 |
H5 |
121.1 |
120.0 |
C5 |
C4 |
C3 |
121.9 |
120.0 |
C5 |
C4 |
O1 |
116.4 |
120.1 |
C3 |
C2 |
H2 |
121.1 |
120.0 |
C2 |
C3 |
C4 |
119.5 |
120.0 |
C2 |
C3 |
H3 |
120.3 |
120.0 |
C4 |
C3 |
H3 |
120.3 |
120.0 |
C3 |
C4 |
O1 |
121.7 |
120.0 |
C4 |
O1 |
C7 |
122.4 |
106.9 |
O1 |
C7 |
H7C1 |
122.4 |
109.5 |
O1 |
C7 |
H7C2 |
107.6 |
109.5 |
O1 |
C7 |
H7C3 |
107.6 |
109.4 |
H7C1 |
C7 |
H7C2 |
107.6 |
109.5 |
H7C1 |
C7 |
H7C3 |
107.6 |
109.5 |
H7C2 |
C7 |
H7C3 |
102.2 |
109.4 |
Torsion Angles for PU2
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H181 |
C18 |
O2 |
H182 |
125.2 |
239.9 |
H181 |
C18 |
O2 |
H183 |
234.7 |
120.0 |
H182 |
C18 |
O2 |
H183 |
109.5 |
240.0 |
C6 |
C1 |
O2 |
C18 |
196.3 |
180.0 |
C2 |
C1 |
O2 |
C18 |
17.0 |
0.0 |
O2 |
C18 |
H181 |
H182 |
234.7 |
120.0 |
O2 |
C18 |
H181 |
H183 |
125.3 |
240.0 |
H181 |
C18 |
O2 |
C1 |
180.0 |
180.0 |
H182 |
C18 |
H181 |
H183 |
250.5 |
120.0 |
O2 |
C18 |
H182 |
H181 |
131.3 |
240.0 |
O2 |
C18 |
H182 |
H183 |
245.7 |
119.9 |
H182 |
C18 |
O2 |
C1 |
54.8 |
300.0 |
H181 |
C18 |
H182 |
H183 |
114.3 |
240.0 |
O2 |
C18 |
H183 |
H181 |
228.7 |
120.0 |
O2 |
C18 |
H183 |
H182 |
114.4 |
240.1 |
H183 |
C18 |
O2 |
C1 |
305.3 |
60.0 |
H181 |
C18 |
H183 |
H182 |
245.7 |
120.0 |
C12 |
N2 |
C10 |
C9 |
178.3 |
179.9 |
C12 |
N2 |
C10 |
N1 |
1.6 |
359.6 |
N4 |
C12 |
N2 |
C11 |
178.6 |
179.6 |
N2 |
C12 |
N4 |
C14 |
181.6 |
180.3 |
N2 |
C12 |
C11 |
C13 |
176.4 |
179.7 |
N2 |
C12 |
C11 |
N1 |
0.6 |
359.8 |
C10 |
N2 |
C12 |
N4 |
177.3 |
180.0 |
C10 |
N2 |
C12 |
C11 |
358.7 |
0.4 |
N2 |
C10 |
C9 |
C6 |
281.9 |
299.7 |
N2 |
C10 |
C9 |
H9C1 |
156.6 |
179.7 |
N2 |
C10 |
C9 |
H9C2 |
47.1 |
59.7 |
C9 |
C10 |
N2 |
N1 |
176.7 |
180.3 |
C11 |
N1 |
C10 |
N2 |
358.8 |
0.2 |
N2 |
C10 |
N1 |
H1 |
178.8 |
180.2 |
N4 |
C12 |
N2 |
C10 |
177.3 |
180.0 |
N2 |
C12 |
N4 |
C11 |
181.5 |
180.4 |
N4 |
C12 |
C11 |
C13 |
357.7 |
0.0 |
N4 |
C12 |
C11 |
N1 |
181.9 |
180.1 |
C12 |
N4 |
C14 |
N3 |
0.9 |
0.1 |
C12 |
N4 |
C14 |
F1 |
181.5 |
180.1 |
C11 |
C12 |
N2 |
C10 |
358.7 |
0.4 |
N2 |
C12 |
C11 |
N4 |
178.7 |
179.7 |
C11 |
C12 |
N4 |
C14 |
0.0 |
359.9 |
N3 |
C13 |
C11 |
C12 |
3.8 |
0.0 |
C13 |
C11 |
C12 |
N1 |
175.8 |
179.9 |
C12 |
C11 |
C13 |
N5 |
180.8 |
180.0 |
C12 |
C11 |
N1 |
C10 |
0.3 |
360.0 |
C12 |
C11 |
N1 |
H1 |
180.3 |
180.0 |
C14 |
N4 |
C12 |
C11 |
0.0 |
359.9 |
N3 |
C14 |
N4 |
F1 |
179.4 |
180.1 |
N4 |
C14 |
N3 |
C13 |
0.6 |
359.9 |
N4 |
C14 |
N3 |
F1 |
180.6 |
179.9 |
C14 |
N3 |
C13 |
C11 |
357.1 |
360.0 |
C14 |
N3 |
C13 |
N5 |
179.9 |
180.0 |
N4 |
C14 |
F1 |
N3 |
179.4 |
180.1 |
F1 |
C14 |
N3 |
C13 |
180.0 |
180.0 |
N2 |
C10 |
C9 |
N1 |
183.9 |
179.7 |
C6 |
C9 |
C10 |
H9C1 |
125.3 |
120.0 |
C6 |
C9 |
C10 |
H9C2 |
234.7 |
240.0 |
C10 |
C9 |
C6 |
C1 |
155.6 |
270.0 |
C10 |
C9 |
C6 |
C5 |
336.4 |
90.3 |
H9C1 |
C9 |
C10 |
H9C2 |
109.4 |
120.0 |
C11 |
N1 |
C10 |
C9 |
182.4 |
180.0 |
C9 |
C10 |
N1 |
H1 |
2.4 |
360.0 |
C10 |
C9 |
C6 |
H9C1 |
234.7 |
240.0 |
C10 |
C9 |
C6 |
H9C2 |
125.3 |
120.0 |
C6 |
C9 |
C10 |
N1 |
98.0 |
120.0 |
H9C1 |
C9 |
C6 |
H9C2 |
250.6 |
240.0 |
C9 |
C6 |
C1 |
C2 |
178.8 |
180.0 |
C9 |
C6 |
C1 |
O2 |
359.5 |
0.1 |
C1 |
C6 |
C9 |
C5 |
179.1 |
179.6 |
C9 |
C6 |
C5 |
C4 |
181.3 |
180.3 |
C9 |
C6 |
C5 |
H5 |
1.3 |
359.7 |
C10 |
C9 |
H9C1 |
C6 |
126.6 |
120.0 |
C10 |
C9 |
H9C1 |
H9C2 |
243.3 |
240.0 |
H9C1 |
C9 |
C10 |
N1 |
332.7 |
0.0 |
C6 |
C9 |
H9C1 |
H9C2 |
116.7 |
120.0 |
H9C1 |
C9 |
C6 |
C1 |
280.9 |
30.0 |
H9C1 |
C9 |
C6 |
C5 |
101.7 |
210.3 |
C10 |
C9 |
H9C2 |
C6 |
233.4 |
240.0 |
C10 |
C9 |
H9C2 |
H9C1 |
116.7 |
120.0 |
H9C2 |
C9 |
C10 |
N1 |
223.3 |
240.0 |
C6 |
C9 |
H9C2 |
H9C1 |
243.3 |
240.0 |
H9C2 |
C9 |
C6 |
C1 |
30.3 |
149.9 |
H9C2 |
C9 |
C6 |
C5 |
211.1 |
330.3 |
C12 |
C11 |
C13 |
N3 |
3.8 |
0.0 |
C13 |
N3 |
C14 |
F1 |
180.0 |
180.0 |
N3 |
C13 |
C11 |
N1 |
178.4 |
179.9 |
C11 |
C13 |
N3 |
N5 |
177.2 |
180.0 |
N3 |
C13 |
N5 |
H5N1 |
357.1 |
0.1 |
N3 |
C13 |
N5 |
H5N2 |
180.0 |
180.0 |
C12 |
C11 |
C13 |
N1 |
185.4 |
180.1 |
N3 |
C13 |
C11 |
N5 |
183.0 |
180.0 |
C13 |
C11 |
N1 |
C10 |
185.3 |
180.1 |
C13 |
C11 |
N1 |
H1 |
5.3 |
0.1 |
C11 |
C13 |
N5 |
H5N1 |
180.0 |
180.1 |
C11 |
C13 |
N5 |
H5N2 |
2.9 |
360.0 |
N2 |
C10 |
N1 |
C11 |
358.8 |
0.2 |
C12 |
C11 |
N1 |
C13 |
175.0 |
179.9 |
C9 |
C10 |
N1 |
C11 |
182.4 |
180.0 |
N1 |
C11 |
C13 |
N5 |
355.4 |
359.9 |
C10 |
N1 |
C11 |
H1 |
180.0 |
180.0 |
N3 |
C13 |
N5 |
C11 |
177.1 |
180.0 |
N5 |
C13 |
C11 |
N1 |
355.4 |
359.9 |
H5N1 |
N5 |
C13 |
H5N2 |
177.1 |
180.1 |
C13 |
N5 |
H5N1 |
H5N2 |
183.0 |
179.9 |
C13 |
N5 |
H5N2 |
H5N1 |
177.2 |
180.1 |
N2 |
C10 |
N1 |
C9 |
176.4 |
180.3 |
N1 |
C10 |
C9 |
C6 |
98.0 |
120.0 |
N1 |
C10 |
C9 |
H9C1 |
332.7 |
0.0 |
N1 |
C10 |
C9 |
H9C2 |
223.3 |
240.0 |
C11 |
N1 |
C10 |
H1 |
180.0 |
180.0 |
C11 |
N1 |
H1 |
C10 |
180.0 |
180.0 |
C18 |
O2 |
C1 |
C6 |
196.3 |
180.0 |
C1 |
C6 |
C9 |
H9C1 |
280.9 |
30.0 |
C1 |
C6 |
C9 |
H9C2 |
30.3 |
149.9 |
C9 |
C6 |
C1 |
C5 |
180.9 |
180.4 |
C2 |
C1 |
C6 |
O2 |
179.3 |
180.0 |
C6 |
C1 |
C2 |
C3 |
1.0 |
0.1 |
C6 |
C1 |
C2 |
H2 |
181.0 |
180.0 |
C1 |
C6 |
C5 |
C4 |
2.2 |
0.6 |
C1 |
C6 |
C5 |
H5 |
182.2 |
180.0 |
C18 |
O2 |
C1 |
C2 |
17.0 |
0.0 |
C6 |
C1 |
C2 |
O2 |
180.7 |
180.0 |
C2 |
C1 |
C6 |
C5 |
357.9 |
359.6 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
C1 |
C2 |
C3 |
C4 |
359.8 |
359.9 |
C1 |
C2 |
C3 |
H3 |
179.8 |
180.0 |
C1 |
O2 |
C18 |
H181 |
180.0 |
180.0 |
C1 |
O2 |
C18 |
H182 |
54.8 |
300.0 |
C1 |
O2 |
C18 |
H183 |
305.3 |
60.0 |
C6 |
C1 |
O2 |
C2 |
179.3 |
180.0 |
O2 |
C1 |
C6 |
C5 |
178.6 |
179.7 |
O2 |
C1 |
C2 |
C3 |
180.3 |
180.0 |
O2 |
C1 |
C2 |
H2 |
0.3 |
0.0 |
C5 |
C6 |
C9 |
H9C1 |
101.7 |
210.3 |
C5 |
C6 |
C9 |
H9C2 |
211.1 |
330.3 |
C9 |
C6 |
C5 |
C1 |
179.1 |
179.6 |
C5 |
C6 |
C1 |
C2 |
357.9 |
359.6 |
C5 |
C6 |
C1 |
O2 |
178.6 |
179.7 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.6 |
C6 |
C5 |
C4 |
C3 |
358.6 |
359.4 |
C6 |
C5 |
C4 |
O1 |
180.4 |
179.7 |
C6 |
C5 |
C4 |
H5 |
180.0 |
179.4 |
C2 |
C3 |
C4 |
C5 |
0.5 |
0.3 |
C5 |
C4 |
C3 |
H3 |
180.5 |
180.3 |
C3 |
C4 |
C5 |
O1 |
178.2 |
179.7 |
C5 |
C4 |
O1 |
C7 |
176.7 |
179.7 |
C6 |
C5 |
H5 |
C4 |
180.0 |
180.6 |
H5 |
C5 |
C4 |
C3 |
178.6 |
180.0 |
H5 |
C5 |
C4 |
O1 |
0.4 |
0.3 |
C3 |
C2 |
C1 |
O2 |
180.3 |
180.0 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
C5 |
C4 |
C3 |
C2 |
0.5 |
0.3 |
C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
O1 |
178.5 |
180.0 |
H2 |
C2 |
C1 |
O2 |
0.3 |
0.0 |
C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
H2 |
C2 |
C3 |
C4 |
179.8 |
180.0 |
H2 |
C2 |
C3 |
H3 |
359.8 |
360.0 |
C3 |
C4 |
C5 |
H5 |
178.6 |
180.0 |
C5 |
C4 |
C3 |
O1 |
181.9 |
180.3 |
C4 |
C3 |
C2 |
H2 |
179.8 |
180.0 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
C3 |
C4 |
O1 |
C7 |
358.5 |
0.0 |
H3 |
C3 |
C2 |
H2 |
359.8 |
360.0 |
C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
H3 |
C3 |
C4 |
O1 |
358.5 |
360.0 |
O1 |
C4 |
C5 |
H5 |
0.4 |
0.3 |
C5 |
C4 |
O1 |
C3 |
178.2 |
179.7 |
O1 |
C4 |
C3 |
H3 |
358.5 |
360.0 |
C4 |
O1 |
C7 |
H7C1 |
180.0 |
180.0 |
C4 |
O1 |
C7 |
H7C2 |
54.7 |
300.0 |
C4 |
O1 |
C7 |
H7C3 |
305.3 |
60.0 |
H7C1 |
C7 |
O1 |
H7C2 |
125.3 |
240.0 |
H7C1 |
C7 |
O1 |
H7C3 |
234.7 |
120.0 |
H7C2 |
C7 |
O1 |
H7C3 |
109.5 |
240.0 |
O1 |
C7 |
H7C1 |
H7C2 |
234.7 |
120.1 |
O1 |
C7 |
H7C1 |
H7C3 |
125.3 |
240.0 |
H7C2 |
C7 |
H7C1 |
H7C3 |
250.5 |
119.9 |
O1 |
C7 |
H7C2 |
H7C1 |
133.7 |
239.9 |
O1 |
C7 |
H7C2 |
H7C3 |
246.9 |
120.0 |
H7C1 |
C7 |
H7C2 |
H7C3 |
113.2 |
240.0 |
O1 |
C7 |
H7C3 |
H7C1 |
226.3 |
120.0 |
O1 |
C7 |
H7C3 |
H7C2 |
113.1 |
240.0 |
H7C1 |
C7 |
H7C3 |
H7C2 |
246.8 |
120.0 |