PDB Chemical Component PU

Ideal Model

Chemical Description

Name PUROMYCIN-N-AMINOPHOSPHONIC ACID
Formula C22 H30 N7 O8 P
Formal charge 0
Molecular weight 551.489 g/mol
Component type RNA LINKING
Nonstandard Parent Id A

Chemical features

Atom count 68
Chiral atom count 5
Chiral atoms CA C4' C3' C2' C1'
Observed leaving atoms OP3 HO5'
Bond count 71
Aromatic bond count 16

Chemical Identifiers

Systematic name (ACDLabs) 3'-deoxy-N,N-dimethyl-3'-[(O-methyl-N-phosphono-L-tyrosyl)amino]adenosine
Systematic name (OpenEye OEToolkits) [[(2S)-1-[[(2S,3S,4R,5R)-5-(6-dimethylaminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl]amino]-3-(4-methoxyphenyl)-1-oxo-propan-2-yl]amino]phosphonic acid

Chemical Descriptors

Stereo SMILES (CACTVS) COc1ccc(C[C@H](N[P](O)(O)=O)C(=O)N[C@H]2[C@@H](O)[C@@H](O[C@@H]2CO)n3cnc4c(ncnc34)N(C)C)cc1
SMILES (CACTVS) COc1ccc(C[CH](N[P](O)(O)=O)C(=O)N[CH]2[CH](O)[CH](O[CH]2CO)n3cnc4c(ncnc34)N(C)C)cc1
Stereo SMILES (OpenEye) CN(C)c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)NC(=O)[C@H](Cc4ccc(cc4)OC)NP(=O)(O)O)O
InChI descriptor InChI=1S/C22H30N7O8P/c1-28(2)19-17-20(24-10-23-19)29(11-25-17)22-18(31)16(15(9-30)37-22)26-21(32)14(27-38(33,34)35)8-12-4-6-13(36-3)7-5-12/h4-7,10-11,14-16,18,22,30-31H,8-9H2,1-3H3,(H,26,32)(H3,27,33,34,35)/t14-,15+,16+,18+,22+/m0/s1
InChIKey descriptor FHDMBNGCWMYGNF-NVWDDTSBSA-N

Status Information

Last modified 2011-06-04
Created 2000-08-02
Release status REL
Model PDB code 1FFZ
Processing site RCSB