PDB Chemical Component PTR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PTR

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.479 1.468
N H 1.021 1.009
N H2 1.020 1.009
CA C 1.521 1.508
CA CB 1.532 1.529
CA HA 1.115 1.090
C O 1.248 1.207
C OXT 1.253 1.342
OXT HXT 0.949 0.967
CB CG 1.518 1.507
CB HB2 1.116 1.089
CB HB3 1.115 1.090
CG CD1 1.399 1.382
CG CD2 1.404 1.382
CD1 CE1 1.408 1.381
CD1 HD1 1.103 1.079
CD2 CE2 1.409 1.381
CD2 HD2 1.104 1.080
CE1 CZ 1.406 1.387
CE1 HE1 1.102 1.081
CE2 CZ 1.394 1.387
CE2 HE2 1.103 1.079
CZ OH 1.438 1.359
OH P 1.516 1.609
P O1P 1.451 1.481
P O2P 1.456 1.610
P O3P 1.471 1.608
O2P HO2P 0.950 0.966
O3P HO3P 0.950 0.967

Bond Angles for PTR

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 108.2 106.7
CA N H2 112.7 106.8
N CA C 108.2 109.5
N CA CB 110.0 109.5
N CA HA 110.7 109.4
H N H2 112.6 106.7
C CA CB 111.4 109.5
C CA HA 109.2 109.4
CA C O 118.5 120.0
CA C OXT 117.6 120.0
CB CA HA 107.3 109.5
CA CB CG 115.7 109.5
CA CB HB2 109.9 109.5
CA CB HB3 109.9 109.4
O C OXT 123.9 120.0
C OXT HXT 117.5 120.0
CG CB HB2 110.0 109.5
CG CB HB3 110.0 109.5
CB CG CD1 120.8 119.9
CB CG CD2 120.8 119.9
HB2 CB HB3 100.2 109.5
CD1 CG CD2 118.3 120.1
CG CD1 CE1 121.1 120.0
CG CD1 HD1 119.0 120.0
CG CD2 CE2 121.6 120.0
CG CD2 HD2 119.0 120.0
CE1 CD1 HD1 119.8 120.0
CD1 CE1 CZ 119.4 119.9
CD1 CE1 HE1 120.3 120.0
CE2 CD2 HD2 119.4 119.9
CD2 CE2 CZ 119.2 119.9
CD2 CE2 HE2 120.9 120.1
CZ CE1 HE1 120.2 120.1
CE1 CZ CE2 120.4 119.9
CE1 CZ OH 118.5 120.0
CZ CE2 HE2 119.9 120.0
CE2 CZ OH 121.1 120.0
CZ OH P 125.9 106.8
OH P O1P 113.4 109.4
OH P O2P 98.3 109.5
OH P O3P 109.6 109.5
O1P P O2P 111.2 109.4
O1P P O3P 113.3 109.4
O2P P O3P 110.0 109.5
P O2P HO2P 98.2 106.9
P O3P HO3P 109.6 106.8

Torsion Angles for PTR

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 125.2 246.2
C CA N CB 121.9 120.1
C CA N HA 240.4 240.1
N CA C O 169.1 329.9
N CA C OXT 350.2 150.0
CB CA N HA 118.4 120.0
N CA CB CG 68.4 300.0
N CA CB HB2 193.7 60.0
N CA CB HB3 303.1 180.0
CA N H H2 234.8 113.8
H N CA C 180.0 60.0
H N CA CB 58.0 300.0
H N CA HA 299.6 180.0
CA N H2 H 122.8 246.2
H2 N CA C 54.8 173.8
H2 N CA CB 292.8 53.8
H2 N CA HA 174.4 293.7
C CA N H 180.0 60.0
C CA N H2 54.8 173.8
N CA C CB 239.0 240.0
N CA C HA 120.5 119.9
CB CA C HA 241.6 240.0
C CA CB CG 308.4 180.0
C CA CB HB2 73.7 300.0
C CA CB HB3 183.0 60.0
O C CA OXT 178.9 180.0
CA C OXT HXT 180.0 179.9
CB CA N H 58.0 300.0
CB CA N H2 292.8 53.8
N CA CB C 120.0 120.0
N CA CB HA 239.5 240.0
C CA CB HA 119.5 120.0
CB CA C O 290.2 90.0
CB CA C OXT 111.3 270.0
CG CB CA HB2 234.7 240.0
CG CB CA HB3 125.3 120.0
CA CB CG CD1 266.5 90.0
CA CB CG CD2 90.7 269.7
HB2 CB CA HB3 250.6 240.0
HA CA N H 299.6 180.0
HA CA N H2 174.4 293.7
N CA HA C 241.0 240.0
N CA HA CB 120.0 120.0
C CA HA CB 239.1 240.0
HA CA C O 48.6 210.0
HA CA C OXT 229.7 30.0
HA CA CB CG 188.8 60.0
HA CA CB HB2 314.1 180.0
HA CA CB HB3 63.5 300.0
O C CA CB 290.2 90.0
O C CA HA 48.6 210.0
CA C O OXT 181.2 180.0
O C OXT HXT 1.2 360.0
OXT C CA CB 111.3 270.0
OXT C CA HA 229.7 30.0
CA C OXT O 178.8 180.0
CG CB CA HA 188.8 60.0
CA CB CG HB2 125.3 120.0
CA CB CG HB3 234.7 240.0
HB2 CB CG HB3 109.4 120.0
CD1 CG CB CD2 175.8 180.4
CB CG CD1 CE1 184.7 179.9
CB CG CD1 HD1 4.7 360.0
CB CG CD2 CE2 175.2 179.7
CB CG CD2 HD2 355.2 0.4
HB2 CB CA HA 314.1 180.0
CA CB HB2 CG 231.5 240.0
CA CB HB2 HB3 115.7 120.0
CG CB HB2 HB3 244.2 240.0
HB2 CB CG CD1 141.2 330.0
HB2 CB CG CD2 325.4 149.6
HB3 CB CA HA 63.5 300.0
CA CB HB3 CG 128.6 120.0
CA CB HB3 HB2 244.3 240.0
CG CB HB3 HB2 115.8 120.0
HB3 CB CG CD1 31.8 210.0
HB3 CB CG CD2 216.0 29.6
CD1 CG CB HB2 141.2 330.0
CD1 CG CB HB3 31.8 210.0
CB CG CD1 CD2 184.1 179.6
CD1 CG CD2 CE2 359.3 359.3
CD1 CG CD2 HD2 179.3 180.0
CE1 CD1 CG HD1 180.0 179.9
CG CD1 CE1 CZ 359.9 0.0
CG CD1 CE1 HE1 179.9 179.9
CD2 CG CB HB2 325.4 149.6
CD2 CG CB HB3 216.0 29.6
CB CG CD2 CD1 175.9 180.4
CD2 CG CD1 CE1 0.6 0.3
CD2 CG CD1 HD1 180.6 180.4
CE2 CD2 CG HD2 180.0 179.4
CG CD2 CE2 CZ 0.2 0.7
CG CD2 CE2 HE2 180.2 180.3
CE1 CD1 CG CD2 0.6 0.3
CG CD1 CE1 HD1 180.0 180.0
CZ CE1 CD1 HE1 180.0 180.1
CD1 CE1 CZ CE2 359.6 360.0
CD1 CE1 CZ OH 177.9 180.0
HD1 CD1 CG CD2 180.6 180.4
CG CD1 HD1 CE1 180.0 180.0
HD1 CD1 CE1 CZ 179.9 180.0
HD1 CD1 CE1 HE1 359.9 359.9
CG CD2 CE2 HD2 180.0 180.6
CE1 CZ CE2 CD2 0.3 359.7
CZ CE2 CD2 HE2 180.0 180.3
CD2 CE2 CZ OH 182.1 179.7
CG CD2 HD2 CE2 180.0 179.4
HD2 CD2 CE2 CZ 180.2 180.0
HD2 CD2 CE2 HE2 0.2 359.7
CZ CE1 CD1 HD1 179.9 180.0
CD1 CE1 CZ HE1 180.0 179.9
CD2 CE2 CZ CE1 0.3 359.7
CE1 CZ CE2 HE2 180.3 180.0
CE2 CZ CE1 OH 181.7 180.0
CE1 CZ OH P 245.5 89.9
HE1 CE1 CD1 HD1 359.9 359.9
CD1 CE1 HE1 CZ 180.0 180.1
HE1 CE1 CZ CE2 179.6 180.1
HE1 CE1 CZ OH 357.9 0.1
CZ CE2 CD2 HD2 180.2 180.0
CD2 CE2 CZ HE2 180.0 179.7
CE2 CZ CE1 HE1 179.6 180.1
CE1 CZ CE2 OH 178.2 180.0
CE2 CZ OH P 63.8 269.9
HE2 CE2 CD2 HD2 0.2 359.7
CD2 CE2 HE2 CZ 180.0 180.3
HE2 CE2 CZ OH 2.1 0.0
OH CZ CE1 HE1 357.9 0.1
CE1 CZ OH CE2 181.8 180.0
OH CZ CE2 HE2 2.1 0.0
CZ OH P O1P 309.6 60.0
CZ OH P O2P 192.1 179.9
CZ OH P O3P 77.3 300.1
O1P P OH O2P 117.5 240.1
O1P P OH O3P 232.3 119.9
O2P P OH O3P 114.7 239.9
OH P O2P HO2P 180.0 180.0
OH P O3P HO3P 180.0 299.9
OH P O1P O2P 250.3 120.0
OH P O1P O3P 125.8 240.0
O2P P O1P O3P 235.4 120.0
O1P P O2P HO2P 60.9 299.9
O1P P O3P HO3P 307.8 180.0
OH P O2P O1P 119.2 240.1
OH P O2P O3P 245.6 120.1
O1P P O2P O3P 126.4 240.0
O2P P O3P HO3P 73.0 60.1
OH P O3P O1P 232.2 119.9
OH P O3P O2P 107.0 239.9
O1P P O3P O2P 234.8 120.0
O3P P O2P HO2P 294.4 59.9
HO2P O2P P O3P 294.4 59.9