PDB Chemical Component PTQ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PTQ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	O1	1.450	1.430
C1	S1	1.842	1.814
C1	C2	1.491	1.531
O1	C5	1.511	1.429
S1	C7	1.810	1.814
C2	O2	1.400	1.429
C2	C3	1.530	1.531
C3	O3	1.397	1.429
C3	C4	1.516	1.532
C4	O4	1.464	1.429
C4	C5	1.488	1.531
C5	C6	1.493	1.530
O5	C6	1.481	1.429
C7	C8	1.506	1.530
C8	C9	1.476	1.507
C9	C10	1.390	1.382
C9	C14	1.402	1.383
C10	C11	1.411	1.382
C11	C12	1.413	1.382
C12	C13	1.373	1.382
C13	C14	1.336	1.382
C1	H1	1.100	1.090
C2	H2	1.100	1.091
O2	HO2	0.950	0.966
C3	H3	1.100	1.090
O3	HO3	0.949	0.967
C4	H4	1.100	1.090
O4	HO4	0.950	0.966
C5	H5	1.100	1.091
O5	HO5	0.950	0.968
C6	H6	1.100	1.091
C6	H6A	1.100	1.090
C7	H7	1.100	1.089
C7	H7A	1.100	1.090
C8	H8	1.100	1.089
C8	H8A	1.100	1.090
C10	H10	1.079	1.080
C11	H11	1.080	1.081
C12	H12	1.080	1.080
C13	H13	1.080	1.080
C14	H14	1.080	1.081

Bond Angles for PTQ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	S1	105.4	109.5
O1	C1	C2	114.1	109.4
C1	O1	C5	111.2	114.1
O1	C1	H1	109.1	109.5
S1	C1	C2	109.3	109.5
C1	S1	C7	101.3	103.0
S1	C1	H1	113.9	109.5
C1	C2	O2	112.7	109.5
C1	C2	C3	113.3	109.2
C2	C1	H1	105.2	109.5
C1	C2	H2	104.8	109.5
O1	C5	C4	107.9	109.4
O1	C5	C6	99.7	109.5
O1	C5	H5	121.6	109.5
S1	C7	C8	113.2	109.5
S1	C7	H7	108.2	109.5
S1	C7	H7A	108.3	109.5
O2	C2	C3	110.8	109.6
O2	C2	H2	107.8	109.5
C2	O2	HO2	109.5	114.0
C2	C3	O3	110.3	109.5
C2	C3	C4	110.6	109.1
C3	C2	H2	107.0	109.5
C2	C3	H3	109.1	109.5
O3	C3	C4	112.5	109.5
O3	C3	H3	107.2	109.5
C3	O3	HO3	109.5	114.0
C3	C4	O4	105.5	109.5
C3	C4	C5	114.6	109.1
C4	C3	H3	106.9	109.6
C3	C4	H4	108.9	109.6
O4	C4	C5	109.7	109.5
O4	C4	H4	113.9	109.5
C4	O4	HO4	109.5	114.0
C4	C5	C6	121.6	109.5
C5	C4	H4	104.6	109.6
C4	C5	H5	99.7	109.5
C5	C6	O5	104.9	109.5
C6	C5	H5	107.9	109.5
C5	C6	H6	111.0	109.5
C5	C6	H6A	111.0	109.5
C6	O5	HO5	109.5	114.0
O5	C6	H6	111.0	109.5
O5	C6	H6A	111.0	109.4
C7	C8	C9	112.0	109.5
C8	C7	H7	108.2	109.5
C8	C7	H7A	108.2	109.5
C7	C8	H8	108.7	109.5
C7	C8	H8A	108.6	109.5
C8	C9	C10	119.8	120.0
C8	C9	C14	119.6	120.0
C9	C8	H8	108.6	109.5
C9	C8	H8A	108.6	109.5
C10	C9	C14	120.1	119.9
C9	C10	C11	118.1	120.0
C9	C10	H10	121.0	119.9
C9	C14	C13	121.1	120.0
C9	C14	H14	119.5	119.9
C10	C11	C12	119.9	120.0
C11	C10	H10	120.9	120.1
C10	C11	H11	120.0	120.0
C11	C12	C13	119.5	120.0
C12	C11	H11	120.0	120.0
C11	C12	H12	120.3	120.0
C12	C13	C14	121.1	120.0
C13	C12	H12	120.2	120.0
C12	C13	H13	119.5	120.0
C14	C13	H13	119.5	119.9
C13	C14	H14	119.4	120.1
H6	C6	H6A	107.9	109.5
H7	C7	H7A	110.7	109.5
H8	C8	H8A	110.3	109.5

Torsion Angles for PTQ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
S1	C1	O1	C2	240.1	240.0
O1	C1	S1	C7	298.5	295.0
S1	C1	O1	H1	122.7	120.0
O1	C1	C2	O2	175.7	177.5
O1	C1	C2	C3	48.9	57.5
C2	C1	O1	H1	242.6	240.0
O1	C1	C2	H2	292.6	297.6
C1	O1	C5	C4	59.7	61.2
C1	O1	C5	C6	187.6	181.1
C1	O1	C5	H5	305.7	301.2
O1	C1	S1	C2	123.1	120.0
S1	C1	O1	C5	183.0	178.8
O1	C1	S1	H1	240.4	240.0
S1	C1	C2	O2	293.4	297.5
S1	C1	C2	C3	166.6	177.5
C2	C1	S1	H1	117.4	120.0
S1	C1	C2	H2	50.3	57.6
C1	S1	C7	C8	167.8	180.0
C1	S1	C7	H7	287.8	300.0
C1	S1	C7	H7A	47.8	60.0
O1	C1	C2	S1	242.3	240.0
C2	C1	O1	C5	302.9	298.9
O1	C1	C2	H1	119.5	120.0
C2	C1	S1	C7	175.4	175.0
S1	C1	C2	H1	237.3	240.0
O2	C2	C1	C3	126.8	120.0
O2	C2	C1	H2	243.1	239.9
C1	C2	O2	HO2	180.0	59.9
C1	C2	C3	O3	191.4	183.2
C1	C2	C3	C4	316.5	303.0
C3	C2	C1	H2	116.3	119.9
C1	C2	C3	H3	73.8	63.0
C5	O1	C1	S1	183.0	178.8
C5	O1	C1	C2	302.9	298.9
C5	O1	C1	H1	60.3	58.8
C3	C4	C5	O1	302.4	302.4
O4	C4	C5	O1	60.8	62.3
C4	C5	O1	C6	232.1	240.1
O1	C5	C4	H4	183.3	182.4
C4	C5	O1	H5	114.0	120.0
O1	C5	C6	O5	181.6	65.0
C6	C5	O1	H5	241.9	240.0
O1	C5	C6	H6	301.6	185.0
O1	C5	C6	H6A	61.6	305.0
C7	S1	C1	C2	175.4	175.0
C7	S1	C1	H1	58.1	55.0
S1	C7	C8	C9	182.0	180.0
C8	C7	S1	H7	240.0	240.0
C8	C7	S1	H7A	120.0	120.0
S1	C7	C8	H8	302.0	300.0
S1	C7	C8	H8A	62.0	60.0
H7	C7	S1	H7A	240.0	240.0
C1	C2	O2	C3	231.8	240.2
O2	C2	C1	H1	56.2	57.6
C1	C2	O2	H2	115.1	120.1
O2	C2	C3	O3	63.6	63.2
O2	C2	C3	C4	188.7	183.1
C3	C2	O2	H2	243.3	239.8
O2	C2	C3	H3	306.1	303.0
C1	C2	C3	O2	127.8	120.0
C3	C2	C1	H1	289.4	297.6
C1	C2	C3	H2	245.0	240.1
O2	C2	C3	H2	117.2	120.1
C3	C2	O2	HO2	308.2	179.7
O3	C3	C2	C4	234.9	240.1
O3	C3	C2	H3	117.5	120.2
C2	C3	O3	HO3	180.0	300.0
C2	C3	C4	O4	289.4	297.1
C2	C3	C4	C5	50.1	57.0
C4	C3	C2	H3	242.7	240.0
C2	C3	C4	H4	166.8	176.9
C2	C3	O3	C4	124.1	119.6
O3	C3	C2	H2	306.4	303.1
C2	C3	O3	H3	241.3	239.9
O3	C3	C4	O4	53.3	56.9
O3	C3	C4	C5	174.0	176.8
C4	C3	O3	H3	117.2	120.3
O3	C3	C4	H4	290.7	296.8
O1	C5	C4	C3	302.4	302.4
C2	C3	C4	O3	236.1	240.1
C4	C3	C2	H2	71.5	63.0
C2	C3	C4	H3	118.7	119.9
O3	C3	C4	H3	242.6	239.8
C4	C3	O3	HO3	55.9	180.4
O4	C4	C3	C5	239.3	240.1
O4	C4	C3	H4	122.6	120.1
C3	C4	O4	HO4	180.0	300.0
C3	C4	C5	C6	188.4	182.4
C5	C4	C3	H4	243.3	240.0
C3	C4	C5	H5	70.3	62.4
O1	C5	C4	O4	60.8	62.3
C3	C4	O4	C5	123.8	119.7
O4	C4	C3	H3	170.7	177.2
C3	C4	O4	H4	240.7	239.8
O4	C4	C5	C6	306.7	302.3
C5	C4	O4	H4	116.8	120.2
O4	C4	C5	H5	188.7	182.3
O1	C5	C4	C6	114.1	120.0
O1	C5	C4	H5	232.1	240.0
C3	C4	C5	O4	241.7	240.1
C5	C4	C3	H3	291.4	297.1
C3	C4	C5	H4	119.2	119.9
O4	C4	C5	H4	237.5	239.9
C5	C4	O4	HO4	56.2	180.3
C4	C5	C6	O5	299.7	184.9
C6	C5	C4	H5	118.1	120.0
C4	C5	C6	H6	59.8	304.9
C4	C5	C6	H6A	179.7	65.0
O1	C5	C6	C4	241.8	240.1
O1	C5	C6	H5	127.9	120.1
C6	C5	C4	H4	69.2	62.5
C4	C5	C6	H5	246.1	240.0
C5	C6	O5	HO5	180.0	180.0
O5	C6	C5	H6	240.0	240.0
O5	C6	C5	H6A	120.0	120.0
H6	C6	C5	H6A	240.0	240.0
O5	C6	C5	H5	53.7	305.0
C5	C6	O5	H6	120.0	120.0
C5	C6	O5	H6A	240.0	240.0
H6	C6	O5	H6A	120.0	120.0
S1	C7	C8	H7	120.0	120.0
S1	C7	C8	H7A	240.0	240.0
C7	C8	C9	C10	89.6	90.0
C7	C8	C9	C14	276.9	269.8
C9	C8	C7	H8	240.0	240.0
C9	C8	C7	H8A	120.0	120.0
H7	C7	C8	H7A	120.0	120.0
H8	C8	C7	H8A	240.0	240.0
C9	C8	C7	H7	62.0	60.0
C9	C8	C7	H7A	302.0	300.0
C7	C8	C9	H8	120.0	120.0
C7	C8	C9	H8A	240.0	240.0
C10	C9	C8	C14	172.7	180.2
C8	C9	C10	C11	183.0	180.0
C8	C9	C10	H10	3.0	0.0
C8	C9	C14	C13	179.4	179.8
C8	C9	C14	H14	359.4	360.0
H8	C8	C9	H8A	120.0	120.0
C8	C9	C10	C14	187.4	179.8
C10	C9	C8	H8	329.6	330.0
C10	C9	C8	H8A	209.5	210.0
C10	C9	C14	C13	6.8	359.6
C10	C9	C14	H14	186.8	179.8
C9	C10	C11	C12	0.5	0.0
C11	C10	C9	H10	180.0	180.0
C9	C10	C11	H11	180.5	180.0
C8	C9	C14	C10	172.6	180.2
C14	C9	C8	H8	156.9	149.7
C14	C9	C8	H8A	36.9	29.8
C14	C9	C10	C11	355.6	0.2
C14	C9	C10	H10	175.6	180.2
C12	C13	C14	C9	355.0	0.4
C9	C14	C13	H13	175.0	180.2
C13	C14	C9	H14	180.0	179.8
C11	C10	C9	C14	355.6	0.2
C9	C10	C11	H10	180.0	180.0
C10	C11	C12	C13	1.3	359.9
C12	C11	C10	H11	180.0	180.0
C10	C11	C12	H12	181.3	179.9
C12	C11	C10	H10	180.5	180.0
C10	C11	C12	H11	180.0	180.0
C11	C12	C13	C14	1.0	359.8
C13	C12	C11	H12	180.0	180.0
C11	C12	C13	H13	181.0	180.0
C9	C14	C13	C12	355.0	0.4
C13	C12	C11	H11	181.2	180.0
C11	C12	C13	H12	180.0	180.0
C14	C13	C12	H13	180.0	179.8
C12	C13	C14	H14	175.0	180.2
C9	C14	C13	H14	180.0	180.2
C14	C13	C12	H12	181.0	179.9
C12	C13	C14	H13	180.0	180.2
O1	C1	H1	S1	117.5	120.0
O1	C1	H1	C2	237.2	240.1
H1	C1	O1	C5	60.3	58.8
S1	C1	H1	C2	119.7	120.1
H1	C1	S1	C7	58.1	55.0
H1	C1	C2	O2	56.2	57.6
H1	C1	C2	C3	289.4	297.6
H1	C1	C2	H2	173.1	177.6
C1	C2	H2	O2	239.8	239.9
C1	C2	H2	C3	120.6	119.7
H2	C2	C1	H1	173.1	177.6
O2	C2	H2	C3	240.8	239.8
H2	C2	O2	HO2	64.9	299.8
H2	C2	C3	O3	306.4	303.1
H2	C2	C3	C4	71.5	63.0
H2	C2	C3	H3	188.9	182.9
HO2	O2	C2	C3	308.2	179.7
HO2	O2	C2	H2	64.9	299.8
C2	C3	H3	O3	119.5	120.2
C2	C3	H3	C4	240.3	240.4
H3	C3	C2	H2	188.9	182.9
O3	C3	H3	C4	120.8	120.2
H3	C3	O3	HO3	298.7	60.1
H3	C3	C4	O4	170.7	177.2
H3	C3	C4	C5	291.4	297.1
H3	C3	C4	H4	48.1	57.0
HO3	O3	C3	C4	55.9	180.4
HO3	O3	C3	H3	298.7	60.1
C3	C4	H4	O4	117.4	120.2
C3	C4	H4	C5	237.1	240.3
H4	C4	C3	H3	48.1	57.0
O4	C4	H4	C5	119.7	120.2
H4	C4	O4	HO4	299.4	60.2
H4	C4	C5	C6	69.2	62.5
H4	C4	C5	H5	311.2	302.5
HO4	O4	C4	C5	56.2	180.3
HO4	O4	C4	H4	299.4	60.2
O1	C5	H5	C4	118.1	120.0
O1	C5	H5	C6	246.0	240.0
C4	C5	H5	C6	127.9	120.0
H5	C5	C4	H4	311.2	302.5
H5	C5	C6	O5	53.7	305.0
H5	C5	C6	H6	173.7	64.9
H5	C5	C6	H6A	293.7	185.0
HO5	O5	C6	H6	60.0	60.0
HO5	O5	C6	H6A	300.0	300.0
C5	C6	H6	O5	243.7	240.0
H6	C6	C5	H5	173.7	64.9
C5	C6	H6	H6A	121.8	120.1
H6	C6	O5	HO5	60.0	60.0
O5	C6	H6	H6A	238.1	240.0
C5	C6	H6A	O5	116.3	120.0
H6A	C6	C5	H5	293.7	185.0
C5	C6	H6A	H6	238.2	240.0
H6A	C6	O5	HO5	300.0	300.0
O5	C6	H6A	H6	121.9	120.0
S1	C7	H7	C8	236.9	240.0
S1	C7	H7	H7A	118.5	120.0
H7	C7	C8	C9	62.0	60.0
C8	C7	H7	H7A	241.6	240.0
H7	C7	C8	H8	182.0	180.0
H7	C7	C8	H8A	302.0	300.0
S1	C7	H7A	C8	123.1	120.0
S1	C7	H7A	H7	241.5	240.0
H7A	C7	C8	C9	302.0	300.0
C8	C7	H7A	H7	118.4	120.0
H7A	C7	C8	H8	62.0	60.0
H7A	C7	C8	H8A	182.0	180.0
C7	C8	H8	C9	238.0	240.0
H8	C8	C7	H7	182.0	180.0
H8	C8	C7	H7A	62.0	60.0
C7	C8	H8	H8A	119.0	120.0
H8	C8	C9	C10	329.6	330.0
H8	C8	C9	C14	156.9	149.7
C9	C8	H8	H8A	241.0	240.0
C7	C8	H8A	C9	122.0	120.0
H8A	C8	C7	H7	302.0	300.0
H8A	C8	C7	H7A	182.0	180.0
C7	C8	H8A	H8	241.0	240.0
H8A	C8	C9	C10	209.5	210.0
H8A	C8	C9	C14	36.9	29.8
C9	C8	H8A	H8	119.0	120.0
H10	C10	C9	C14	175.6	180.2
C9	C10	H10	C11	180.0	180.0
H10	C10	C11	C12	180.5	180.0
H10	C10	C11	H11	0.5	360.0
C10	C11	H11	C12	180.0	180.0
H11	C11	C10	H10	0.5	360.0
H11	C11	C12	C13	181.2	180.0
H11	C11	C12	H12	1.3	360.0
C11	C12	H12	C13	180.0	180.0
H12	C12	C11	H11	1.3	360.0
H12	C12	C13	C14	181.0	179.9
H12	C12	C13	H13	0.9	0.0
C12	C13	H13	C14	180.0	179.8
H13	C13	C12	H12	0.9	0.0
H13	C13	C14	H14	355.0	0.0
C9	C14	H14	C13	180.0	179.8
H14	C14	C13	H13	355.0	0.0