PDB Chemical Component PTD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PTD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.541	1.507
C1	O1	1.246	1.208
C1	HC1	1.102	1.080
C2	C3	1.552	1.529
C2	HC21	1.116	1.091
C2	HC22	1.115	1.088
C3	C4	1.558	1.529
C3	HC31	1.115	1.090
C3	HC32	1.115	1.090
C4	C5	1.544	1.507
C4	HC41	1.115	1.089
C4	HC42	1.116	1.091
C5	O5	1.252	1.207
C5	HC5	1.103	1.080

Bond Angles for PTD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	121.6	120.0
C2	C1	HC1	129.9	120.0
C1	C2	C3	113.1	109.5
C1	C2	HC21	110.8	109.4
C1	C2	HC22	110.9	109.5
O1	C1	HC1	108.5	120.0
C3	C2	HC21	110.9	109.4
C3	C2	HC22	110.9	109.5
C2	C3	C4	112.3	109.5
C2	C3	HC31	111.2	109.5
C2	C3	HC32	111.1	109.5
HC21	C2	HC22	99.4	109.5
C4	C3	HC31	111.1	109.5
C4	C3	HC32	111.2	109.5
C3	C4	C5	113.4	109.5
C3	C4	HC41	110.8	109.5
C3	C4	HC42	110.8	109.5
HC31	C3	HC32	99.2	109.4
C5	C4	HC41	110.8	109.5
C5	C4	HC42	110.7	109.4
C4	C5	O5	121.9	120.0
C4	C5	HC5	129.7	120.0
HC41	C4	HC42	99.5	109.4
O5	C5	HC5	108.5	120.0

Torsion Angles for PTD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	HC1	180.0	179.7
C3	C2	C1	HC21	234.7	240.1
C3	C2	C1	HC22	125.3	120.1
C1	C2	C3	C4	61.4	180.0
C1	C2	C3	HC31	186.6	300.0
C1	C2	C3	HC32	296.2	59.9
HC21	C2	C1	HC22	250.6	240.0
C2	C1	O1	HC1	180.0	180.3
O1	C1	C2	C3	260.9	120.1
O1	C1	C2	HC21	26.2	240.0
O1	C1	C2	HC22	135.6	0.0
C2	C1	HC1	O1	180.0	179.7
HC1	C1	C2	C3	80.9	300.3
HC1	C1	C2	HC21	206.2	60.3
HC1	C1	C2	HC22	315.6	180.3
C3	C2	C1	O1	260.9	120.1
C3	C2	C1	HC1	80.9	300.3
C1	C2	C3	HC21	125.3	119.9
C1	C2	C3	HC22	234.7	239.9
HC21	C2	C3	HC22	109.4	120.0
C4	C3	C2	HC31	234.8	240.0
C4	C3	C2	HC32	125.3	120.0
C2	C3	C4	C5	178.6	180.0
C2	C3	C4	HC41	303.9	300.0
C2	C3	C4	HC42	53.3	60.0
HC31	C3	C2	HC32	250.5	240.0
HC21	C2	C1	O1	26.2	240.0
HC21	C2	C1	HC1	206.2	60.3
C1	C2	HC21	C3	233.5	240.0
C1	C2	HC21	HC22	116.7	120.0
C3	C2	HC21	HC22	243.2	240.0
HC21	C2	C3	C4	296.1	60.0
HC21	C2	C3	HC31	61.4	180.0
HC21	C2	C3	HC32	170.9	300.0
HC22	C2	C1	O1	135.6	0.0
HC22	C2	C1	HC1	315.6	180.3
C1	C2	HC22	C3	126.6	120.1
C1	C2	HC22	HC21	243.3	240.1
C3	C2	HC22	HC21	116.7	120.0
HC22	C2	C3	C4	186.7	300.0
HC22	C2	C3	HC31	311.9	60.0
HC22	C2	C3	HC32	61.5	180.0
C4	C3	C2	HC21	296.1	60.0
C4	C3	C2	HC22	186.7	300.0
C2	C3	C4	HC31	125.2	120.0
C2	C3	C4	HC32	234.8	239.9
HC31	C3	C4	HC32	109.5	119.9
C5	C4	C3	HC41	234.7	239.9
C5	C4	C3	HC42	125.3	120.0
C3	C4	C5	O5	156.6	120.1
C3	C4	C5	HC5	336.6	300.0
HC41	C4	C3	HC42	250.6	240.1
HC31	C3	C2	HC21	61.4	180.0
HC31	C3	C2	HC22	311.9	60.0
C2	C3	HC31	C4	234.1	240.0
C2	C3	HC31	HC32	117.0	120.0
C4	C3	HC31	HC32	242.9	240.0
HC31	C3	C4	C5	53.3	60.0
HC31	C3	C4	HC41	178.7	180.0
HC31	C3	C4	HC42	288.1	300.0
HC32	C3	C2	HC21	170.9	300.0
HC32	C3	C2	HC22	61.5	180.0
C2	C3	HC32	C4	125.9	120.1
C2	C3	HC32	HC31	242.9	240.0
C4	C3	HC32	HC31	117.0	120.0
HC32	C3	C4	C5	303.8	300.0
HC32	C3	C4	HC41	69.1	60.1
HC32	C3	C4	HC42	178.5	180.0
C5	C4	C3	HC31	53.3	60.0
C5	C4	C3	HC32	303.8	300.0
C3	C4	C5	HC41	125.3	120.1
C3	C4	C5	HC42	234.7	240.0
HC41	C4	C5	HC42	109.4	119.9
O5	C5	C4	HC5	180.0	180.1
HC41	C4	C3	HC31	178.7	180.0
HC41	C4	C3	HC32	69.1	60.1
C3	C4	HC41	C5	233.2	239.9
C3	C4	HC41	HC42	116.6	120.0
C5	C4	HC41	HC42	243.4	240.1
HC41	C4	C5	O5	31.2	0.0
HC41	C4	C5	HC5	211.2	179.9
HC42	C4	C3	HC31	288.1	300.0
HC42	C4	C3	HC32	178.5	180.0
C3	C4	HC42	C5	126.8	120.0
C3	C4	HC42	HC41	243.4	240.0
C5	C4	HC42	HC41	116.6	120.0
HC42	C4	C5	O5	281.9	240.1
HC42	C4	C5	HC5	101.8	60.0
O5	C5	C4	HC41	31.2	0.0
O5	C5	C4	HC42	281.9	240.1
C4	C5	O5	HC5	180.0	179.9
HC5	C5	C4	HC41	211.2	179.9
HC5	C5	C4	HC42	101.8	60.0
C4	C5	HC5	O5	180.0	180.1