PDB Chemical Component PTA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PTA

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N	CA	1.443	1.469
N	H	1.000	1.009
N	H2	1.000	1.009
CA	CB	1.577	1.530
CA	P	1.821	1.823
CA	HA	1.100	1.090
CB	CG	1.581	1.530
CB	HB2	1.101	1.089
CB	HB3	1.100	1.090
CG	CD1	1.521	1.530
CG	CD2	1.521	1.530
CG	HG	1.100	1.090
CD1	HD11	1.100	1.090
CD1	HD12	1.100	1.089
CD1	HD13	1.100	1.090
CD2	HD21	1.100	1.090
CD2	HD22	1.100	1.090
CD2	HD23	1.100	1.091
P	O1P	1.492	1.480
P	O2P	1.500	1.609
P	CM	1.794	1.823
O2P	HOP2	0.950	0.967
CM	C	1.524	1.507
CM	HM1	1.100	1.090
CM	HM2	1.100	1.090
C	O	1.247	1.208
C	OXT	1.421	1.342
OXT	HXT	0.951	0.967

Bond Angles for PTA

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CA	N	H	109.5	111.0
CA	N	H2	109.4	111.0
N	CA	CB	109.0	109.4
N	CA	P	108.4	109.5
N	CA	HA	111.9	109.4
H	N	H2	109.5	110.9
CB	CA	P	113.2	109.4
CB	CA	HA	106.9	109.5
CA	CB	CG	112.6	109.5
CA	CB	HB2	108.4	109.5
CA	CB	HB3	108.4	109.5
P	CA	HA	107.5	109.5
CA	P	O1P	105.7	109.5
CA	P	O2P	106.1	109.5
CA	P	CM	108.6	109.5
CG	CB	HB2	108.4	109.5
CG	CB	HB3	108.4	109.4
CB	CG	CD1	106.7	109.5
CB	CG	CD2	114.6	109.5
CB	CG	HG	108.7	109.5
HB2	CB	HB3	110.5	109.5
CD1	CG	CD2	111.8	109.5
CD1	CG	HG	111.8	109.5
CG	CD1	HD11	109.5	109.5
CG	CD1	HD12	109.5	109.5
CG	CD1	HD13	109.4	109.4
CD2	CG	HG	103.3	109.5
CG	CD2	HD21	109.5	109.5
CG	CD2	HD22	109.4	109.5
CG	CD2	HD23	109.5	109.5
HD11	CD1	HD12	109.5	109.5
HD11	CD1	HD13	109.4	109.5
HD12	CD1	HD13	109.5	109.5
HD21	CD2	HD22	109.5	109.5
HD21	CD2	HD23	109.4	109.5
HD22	CD2	HD23	109.5	109.4
O1P	P	O2P	113.3	109.5
O1P	P	CM	111.1	109.5
O2P	P	CM	111.7	109.5
P	O2P	HOP2	109.5	114.0
P	CM	C	115.2	109.5
P	CM	HM1	107.6	109.5
P	CM	HM2	107.6	109.5
C	CM	HM1	107.6	109.5
C	CM	HM2	107.6	109.5
CM	C	O	121.2	120.0
CM	C	OXT	121.1	120.0
HM1	CM	HM2	111.3	109.4
O	C	OXT	116.3	120.0
C	OXT	HXT	109.5	117.0

Torsion Angles for PTA

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
H	N	CA	H2	240.0	236.1
CB	CA	N	P	236.4	240.0
CB	CA	N	HA	118.0	120.0
N	CA	CB	CG	305.8	297.1
N	CA	CB	HB2	65.8	57.2
N	CA	CB	HB3	185.8	177.2
P	CA	N	HA	241.6	240.0
N	CA	P	O1P	304.3	303.2
N	CA	P	O2P	183.8	183.2
N	CA	P	CM	63.6	63.2
CA	N	H	H2	120.0	123.9
H	N	CA	CB	180.0	176.1
H	N	CA	P	303.6	296.1
H	N	CA	HA	62.0	56.1
CA	N	H2	H	240.0	236.1
H2	N	CA	CB	300.0	300.0
H2	N	CA	P	63.6	60.0
H2	N	CA	HA	182.0	180.0
CB	CA	N	H	180.0	176.1
CB	CA	N	H2	300.0	300.0
N	CA	CB	P	120.7	120.0
N	CA	CB	HA	238.9	240.1
P	CA	CB	HA	118.2	120.1
CB	CA	P	O1P	65.3	63.1
CB	CA	P	O2P	304.8	303.1
CB	CA	P	CM	184.6	183.1
CG	CB	CA	HB2	240.0	240.0
CG	CB	CA	HB3	120.0	119.9
CA	CB	CG	CD1	176.5	174.2
CA	CB	CG	CD2	300.8	294.2
CA	CB	CG	HG	55.9	54.2
HB2	CB	CA	HB3	240.0	240.0
P	CA	N	H	303.6	296.1
P	CA	N	H2	63.6	60.0
N	CA	P	CB	239.0	240.0
N	CA	P	HA	121.1	120.0
CB	CA	P	HA	242.1	239.9
P	CA	CB	CG	185.1	177.2
P	CA	CB	HB2	305.1	297.2
P	CA	CB	HB3	65.2	57.2
O1P	P	CA	O2P	120.5	120.0
O1P	P	CA	CM	240.8	240.0
O2P	P	CA	CM	120.2	120.0
CA	P	O2P	HOP2	115.5	304.0
CA	P	CM	C	82.9	185.0
CA	P	CM	HM1	202.9	305.0
CA	P	CM	HM2	322.9	65.0
HA	CA	N	H	62.0	56.1
HA	CA	N	H2	182.0	180.0
N	CA	HA	CB	119.2	120.0
N	CA	HA	P	241.1	240.0
CB	CA	HA	P	121.9	120.0
HA	CA	CB	CG	66.9	57.1
HA	CA	CB	HB2	186.9	177.1
HA	CA	CB	HB3	306.9	297.2
HA	CA	P	O1P	183.2	183.2
HA	CA	P	O2P	62.7	63.2
HA	CA	P	CM	302.4	303.2
CG	CB	CA	P	185.1	177.2
CG	CB	CA	HA	66.9	57.1
CA	CB	CG	HB2	120.0	120.1
CA	CB	CG	HB3	240.0	240.0
HB2	CB	CG	HB3	120.0	120.0
CD1	CG	CB	CD2	235.7	240.0
CD1	CG	CB	HG	120.7	120.0
CB	CG	CD1	HD11	180.0	60.0
CB	CG	CD1	HD12	300.0	180.0
CB	CG	CD1	HD13	60.0	300.0
CD2	CG	CB	HG	245.0	240.0
CB	CG	CD2	HD21	180.0	66.2
CB	CG	CD2	HD22	300.0	186.2
CB	CG	CD2	HD23	60.0	306.1
HB2	CB	CA	P	305.1	297.2
HB2	CB	CA	HA	186.9	177.1
CA	CB	HB2	CG	237.4	240.0
CA	CB	HB2	HB3	118.7	120.0
CG	CB	HB2	HB3	241.3	240.1
HB2	CB	CG	CD1	56.5	54.1
HB2	CB	CG	CD2	180.8	174.1
HB2	CB	CG	HG	295.8	294.1
HB3	CB	CA	P	65.2	57.2
HB3	CB	CA	HA	306.9	297.2
CA	CB	HB3	CG	122.6	120.0
CA	CB	HB3	HB2	241.3	239.9
CG	CB	HB3	HB2	118.7	120.0
HB3	CB	CG	CD1	296.5	294.1
HB3	CB	CG	CD2	60.8	54.2
HB3	CB	CG	HG	175.8	174.2
CD1	CG	CB	HB2	56.5	54.1
CD1	CG	CB	HB3	296.5	294.1
CB	CG	CD1	CD2	126.0	120.0
CB	CG	CD1	HG	241.3	240.0
CD2	CG	CD1	HG	115.2	120.0
CD1	CG	CD2	HD21	301.6	186.2
CD1	CG	CD2	HD22	61.6	306.2
CD1	CG	CD2	HD23	181.6	66.2
HD11	CD1	CG	HD12	240.0	240.0
HD11	CD1	CG	HD13	120.0	120.0
HD12	CD1	CG	HD13	240.0	240.0
CD2	CG	CB	HB2	180.8	174.1
CD2	CG	CB	HB3	60.8	54.2
CB	CG	CD2	CD1	238.4	240.0
CB	CG	CD2	HG	118.1	120.0
CD1	CG	CD2	HG	239.7	240.0
CD2	CG	CD1	HD11	53.9	300.0
CD2	CG	CD1	HD12	174.0	60.0
CD2	CG	CD1	HD13	293.9	180.0
HD21	CD2	CG	HD22	240.0	240.0
HD21	CD2	CG	HD23	120.0	120.1
HD22	CD2	CG	HD23	240.0	240.1
HG	CG	CB	HB2	295.8	294.1
HG	CG	CB	HB3	175.8	174.2
CB	CG	HG	CD1	117.5	120.0
CB	CG	HG	CD2	237.8	240.0
CD1	CG	HG	CD2	120.3	120.0
HG	CG	CD1	HD11	298.7	180.0
HG	CG	CD1	HD12	58.7	300.0
HG	CG	CD1	HD13	178.7	60.0
HG	CG	CD2	HD21	61.9	306.2
HG	CG	CD2	HD22	181.9	66.2
HG	CG	CD2	HD23	301.9	186.1
HD11	CD1	CG	CD2	53.9	300.0
HD11	CD1	CG	HG	298.7	180.0
CG	CD1	HD11	HD12	120.0	120.0
CG	CD1	HD11	HD13	240.0	240.0
HD12	CD1	HD11	HD13	120.0	120.0
HD12	CD1	CG	CD2	174.0	60.0
HD12	CD1	CG	HG	58.7	300.0
CG	CD1	HD12	HD11	239.9	240.0
CG	CD1	HD12	HD13	120.0	120.0
HD11	CD1	HD12	HD13	240.0	240.0
HD13	CD1	CG	CD2	293.9	180.0
HD13	CD1	CG	HG	178.7	60.0
CG	CD1	HD13	HD11	120.0	120.0
CG	CD1	HD13	HD12	240.0	240.0
HD11	CD1	HD13	HD12	120.0	120.0
HD21	CD2	CG	HG	61.9	306.2
CG	CD2	HD21	HD22	120.0	120.0
CG	CD2	HD21	HD23	240.0	240.0
HD22	CD2	HD21	HD23	120.0	120.0
HD22	CD2	CG	HG	181.9	66.2
CG	CD2	HD22	HD21	240.0	240.0
CG	CD2	HD22	HD23	120.0	120.0
HD21	CD2	HD22	HD23	240.0	240.0
HD23	CD2	CG	HG	301.9	186.1
CG	CD2	HD23	HD21	120.0	120.1
CG	CD2	HD23	HD22	240.0	240.0
HD21	CD2	HD23	HD22	120.0	120.0
O1P	P	CA	HA	183.2	183.2
CA	P	O1P	O2P	244.3	240.0
CA	P	O1P	CM	117.6	120.0
O2P	P	O1P	CM	233.3	240.0
O1P	P	O2P	HOP2	0.0	184.0
O1P	P	CM	C	198.7	305.0
O1P	P	CM	HM1	318.7	65.0
O1P	P	CM	HM2	78.7	185.0
O2P	P	CA	HA	62.7	63.2
CA	P	O2P	O1P	115.5	120.0
CA	P	O2P	CM	241.8	240.0
O1P	P	O2P	CM	126.3	120.0
O2P	P	CM	C	326.2	65.0
O2P	P	CM	HM1	86.2	185.0
O2P	P	CM	HM2	206.2	305.0
CM	P	CA	HA	302.4	303.2
CA	P	CM	O1P	244.2	240.0
CA	P	CM	O2P	116.7	120.0
O1P	P	CM	O2P	232.5	240.0
CM	P	O2P	HOP2	233.7	63.9
C	CM	P	HM1	240.0	240.0
C	CM	P	HM2	120.0	120.0
P	CM	C	O	289.5	80.0
P	CM	C	OXT	95.6	260.0
HM1	CM	P	HM2	240.0	240.0
HOP2	O2P	P	CM	233.7	63.9
P	CM	C	HM1	120.0	120.0
P	CM	C	HM2	240.0	240.0
HM1	CM	C	HM2	120.0	120.0
O	C	CM	OXT	193.9	180.0
CM	C	OXT	HXT	193.2	180.0
P	CM	HM1	C	235.3	240.0
P	CM	HM1	HM2	117.7	120.0
C	CM	HM1	HM2	242.3	240.0
HM1	CM	C	O	169.5	320.0
HM1	CM	C	OXT	335.6	140.0
P	CM	HM2	C	124.7	120.0
P	CM	HM2	HM1	242.3	240.0
C	CM	HM2	HM1	117.7	120.0
HM2	CM	C	O	49.5	200.0
HM2	CM	C	OXT	215.6	20.0
O	C	CM	HM1	169.5	320.0
O	C	CM	HM2	49.5	200.0
CM	C	O	OXT	166.7	180.0
O	C	OXT	HXT	360.0	360.0
OXT	C	CM	HM1	335.6	140.0
OXT	C	CM	HM2	215.6	20.0
CM	C	OXT	O	193.2	180.0