PDB Chemical Component PSZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PSZ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O1T	C3A	1.253	1.349
O1T	HO1T	0.949	0.967
C3A	O2T	1.253	1.217
C3A	C2T	1.492	1.464
C2T	C3T	1.396	1.367
C2T	S	1.737	1.759
S	C5T	1.732	1.705
C5T	C4T	1.390	1.342
C5T	H5T	1.080	1.080
C4T	C3T	1.401	1.378
C4T	N4A	1.456	1.407
C3T	H3T	1.080	1.080
N4A	C4A	1.472	1.465
N4A	HN4A	1.000	0.970
C4A	C4	1.511	1.507
C4A	H4A1	1.100	1.089
C4A	H4A2	1.100	1.090
C4	C3	1.480	1.391
C4	C5	1.482	1.385
C3	O3	1.362	1.359
C3	C2	1.484	1.388
O3	HO3	0.950	0.967
C2	C2A	1.506	1.507
C2	N1	1.342	1.318
C2A	H2A1	1.100	1.090
C2A	H2A2	1.100	1.090
C2A	H2A3	1.100	1.090
N1	C6	1.344	1.318
C6	C5	1.393	1.383
C6	H6	1.080	1.080
C5	C5A	1.511	1.506
C5A	O4P	1.427	1.429
C5A	H5A1	1.100	1.090
C5A	H5A2	1.100	1.090
O4P	P	1.610	1.610
P	O2P	1.509	1.480
P	O3P	1.510	1.610
P	O1P	1.510	1.611
O3P	HO3P	0.950	0.967
O1P	HO1P	0.950	0.968

Bond Angles for PSZ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C3A	O1T	HO1T	109.5	114.0
O1T	C3A	O2T	133.1	120.0
O1T	C3A	C2T	113.5	120.0
O2T	C3A	C2T	113.4	120.0
C3A	C2T	C3T	131.6	125.5
C3A	C2T	S	122.4	125.4
S	C2T	C3T	106.0	109.1
C2T	C3T	C4T	112.1	113.3
C2T	C3T	H3T	123.9	123.4
C2T	S	C5T	99.2	91.6
S	C5T	C4T	101.7	111.0
S	C5T	H5T	129.2	124.5
C4T	C5T	H5T	129.1	124.5
C5T	C4T	C3T	121.0	114.9
C5T	C4T	N4A	119.5	122.5
C3T	C4T	N4A	119.5	122.6
C4T	C3T	H3T	124.0	123.3
C4T	N4A	C4A	109.5	120.0
C4T	N4A	HN4A	109.4	120.0
C4A	N4A	HN4A	109.5	119.9
N4A	C4A	C4	109.4	109.5
N4A	C4A	H4A1	109.5	109.5
N4A	C4A	H4A2	109.5	109.5
C4	C4A	H4A1	109.5	109.5
C4	C4A	H4A2	109.5	109.5
C4A	C4	C3	121.5	120.8
C4A	C4	C5	121.5	120.8
H4A1	C4A	H4A2	109.4	109.5
C3	C4	C5	116.9	118.4
C4	C3	O3	121.3	120.5
C4	C3	C2	117.5	119.1
C4	C5	C6	119.2	119.2
C4	C5	C5A	120.4	120.4
O3	C3	C2	121.3	120.5
C3	O3	HO3	109.5	114.0
C3	C2	C2A	119.8	119.6
C3	C2	N1	120.3	120.7
C2A	C2	N1	119.9	119.7
C2	C2A	H2A1	109.5	109.5
C2	C2A	H2A2	109.5	109.4
C2	C2A	H2A3	109.5	109.5
C2	N1	C6	123.4	121.8
H2A1	C2A	H2A2	109.4	109.5
H2A1	C2A	H2A3	109.5	109.5
H2A2	C2A	H2A3	109.5	109.4
N1	C6	C5	122.7	120.9
N1	C6	H6	118.6	119.6
C5	C6	H6	118.7	119.5
C6	C5	C5A	120.4	120.4
C5	C5A	O4P	109.5	109.5
C5	C5A	H5A1	109.5	109.5
C5	C5A	H5A2	109.5	109.4
O4P	C5A	H5A1	109.5	109.5
O4P	C5A	H5A2	109.5	109.5
C5A	O4P	P	120.5	123.0
H5A1	C5A	H5A2	109.4	109.4
O4P	P	O2P	103.9	109.5
O4P	P	O3P	103.9	109.5
O4P	P	O1P	103.9	109.5
O3P	P	O2P	114.4	109.5
O1P	P	O2P	114.4	109.5
O3P	P	O1P	114.4	109.5
P	O3P	HO3P	109.5	114.0
P	O1P	HO1P	109.5	114.0

Torsion Angles for PSZ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2T	C3A	O1T	C2T	179.9	180.0
O1T	C3A	C2T	C3T	170.5	180.0
O1T	C3A	C2T	S	350.4	0.3
HO1T	O1T	C3A	O2T	0.0	360.0
HO1T	O1T	C3A	C2T	180.1	179.9
O2T	C3A	O1T	HO1T	0.0	360.0
O1T	C3A	O2T	C2T	180.1	180.0
O2T	C3A	C2T	C3T	350.6	360.0
O2T	C3A	C2T	S	170.5	180.3
C2T	C3A	O1T	HO1T	180.1	179.9
O1T	C3A	C2T	O2T	179.9	180.0
S	C2T	C3A	C3T	179.9	180.3
C3A	C2T	C3T	C4T	180.0	179.8
C3A	C2T	C3T	H3T	0.0	0.1
C3A	C2T	S	C5T	180.0	180.0
C3A	C2T	C3T	S	179.9	180.3
C3T	C2T	S	C5T	360.0	0.3
C5T	C4T	C3T	C2T	359.9	0.5
C2T	C3T	C4T	N4A	180.0	180.2
C4T	C3T	C2T	H3T	180.0	179.7
C3A	C2T	S	C3T	180.1	179.7
S	C2T	C3T	C4T	0.1	359.5
S	C2T	C3T	H3T	180.1	179.8
C2T	S	C5T	C4T	360.0	0.0
C2T	S	C5T	H5T	180.0	180.0
C5T	S	C2T	C3T	360.0	0.3
C4T	C5T	S	H5T	180.0	180.0
S	C5T	C4T	C3T	0.1	359.7
S	C5T	C4T	N4A	180.0	180.0
C2T	C3T	C4T	C5T	359.9	0.5
S	C5T	C4T	H5T	180.0	180.0
C3T	C4T	C5T	N4A	180.1	179.7
C5T	C4T	C3T	H3T	179.9	180.3
C5T	C4T	N4A	C4A	123.2	0.0
C5T	C4T	N4A	HN4A	243.2	180.0
S	C5T	H5T	C4T	180.0	180.0
H5T	C5T	C4T	C3T	180.0	179.7
H5T	C5T	C4T	N4A	360.0	0.0
C2T	C3T	C4T	H3T	180.0	180.3
C3T	C4T	C5T	H5T	180.0	179.7
C5T	C4T	C3T	N4A	179.9	180.3
C3T	C4T	N4A	C4A	303.1	180.3
C3T	C4T	N4A	HN4A	63.1	0.3
N4A	C4T	C5T	H5T	360.0	0.0
C5T	C4T	N4A	C3T	180.1	179.7
N4A	C4T	C3T	H3T	360.0	359.9
C4A	N4A	C4T	HN4A	240.0	180.0
C4T	N4A	C4A	C4	120.8	180.0
C4T	N4A	C4A	H4A1	240.8	300.0
C4T	N4A	C4A	H4A2	0.7	60.0
C2T	C3T	H3T	C4T	180.0	179.7
H3T	C3T	C4T	N4A	360.0	359.9
C4T	N4A	C4A	HN4A	120.0	180.0
C4	C4A	N4A	H4A1	240.0	240.0
C4	C4A	N4A	H4A2	120.0	120.0
N4A	C4A	C4	C3	235.1	90.0
N4A	C4A	C4	C5	55.2	269.7
H4A1	C4A	N4A	H4A2	240.0	240.0
C4T	N4A	HN4A	C4A	240.0	180.0
HN4A	N4A	C4A	C4	0.8	0.0
HN4A	N4A	C4A	H4A1	120.8	120.0
HN4A	N4A	C4A	H4A2	240.8	240.0
C4	C4A	N4A	HN4A	0.8	0.0
N4A	C4A	C4	H4A1	120.0	120.0
N4A	C4A	C4	H4A2	240.0	240.0
H4A1	C4A	C4	H4A2	119.9	120.0
C3	C4	C4A	C5	179.9	180.3
C4A	C4	C3	O3	0.1	0.1
C4A	C4	C3	C2	180.0	180.0
C4A	C4	C5	C6	179.9	179.8
C4A	C4	C5	C5A	359.9	0.0
H4A1	C4A	N4A	HN4A	120.8	120.0
N4A	C4A	H4A1	C4	240.0	240.0
N4A	C4A	H4A1	H4A2	120.0	120.0
C4	C4A	H4A1	H4A2	240.0	240.0
H4A1	C4A	C4	C3	115.1	330.0
H4A1	C4A	C4	C5	295.2	149.7
H4A2	C4A	N4A	HN4A	240.8	240.0
N4A	C4A	H4A2	C4	120.0	120.0
N4A	C4A	H4A2	H4A1	240.0	240.0
C4	C4A	H4A2	H4A1	120.0	120.0
H4A2	C4A	C4	C3	355.1	210.0
H4A2	C4A	C4	C5	175.3	29.7
C3	C4	C4A	H4A1	115.1	330.0
C3	C4	C4A	H4A2	355.1	210.0
C4A	C4	C3	C5	180.1	179.7
C3	C4	C5	C6	0.1	359.5
C3	C4	C5	C5A	180.0	179.7
O3	C3	C4	C2	180.1	180.1
C4	C3	O3	HO3	50.6	90.0
C4	C3	C2	C2A	180.0	180.0
C4	C3	C2	N1	0.1	0.0
C5	C4	C4A	H4A1	295.2	149.7
C5	C4	C4A	H4A2	175.3	29.7
C4A	C4	C5	C3	179.9	180.3
C5	C4	C3	O3	180.0	180.3
C5	C4	C3	C2	359.9	0.3
N1	C6	C5	C4	0.0	0.5
C4	C5	C6	H6	180.0	180.3
C6	C5	C4	C5A	180.0	179.8
C4	C5	C5A	O4P	53.5	180.0
C4	C5	C5A	H5A1	173.5	300.0
C4	C5	C5A	H5A2	293.5	60.0
O3	C3	C4	C5	180.0	180.3
C4	C3	O3	C2	179.9	179.9
O3	C3	C2	C2A	359.9	359.9
O3	C3	C2	N1	180.0	179.9
C2	C3	C4	C5	359.9	0.3
C4	C3	C2	O3	180.1	180.1
C2	C3	O3	HO3	230.7	270.1
C2A	C2	C3	N1	179.9	180.0
C3	C2	C2A	H2A1	318.8	90.0
C3	C2	C2A	H2A2	78.8	210.0
C3	C2	C2A	H2A3	198.8	330.0
C3	C2	N1	C6	360.0	360.0
HO3	O3	C3	C2	230.7	270.1
C3	C2	C2A	N1	180.1	180.0
C2A	C2	N1	C6	180.1	180.0
H2A1	C2A	C2	H2A2	240.0	240.0
H2A1	C2A	C2	H2A3	120.0	120.1
H2A2	C2A	C2	H2A3	240.0	240.1
C3	C2	N1	C2A	179.9	180.0
N1	C2	C2A	H2A1	138.7	270.1
N1	C2	C2A	H2A2	258.7	30.0
N1	C2	C2A	H2A3	18.8	150.0
C2	N1	C6	C5	360.0	359.8
C2	N1	C6	H6	180.0	179.9
H2A1	C2A	C2	N1	138.7	270.1
C2	C2A	H2A1	H2A2	120.0	120.0
C2	C2A	H2A1	H2A3	240.0	239.9
H2A2	C2A	H2A1	H2A3	120.0	120.0
H2A2	C2A	C2	N1	258.7	30.0
C2	C2A	H2A2	H2A1	240.0	240.0
C2	C2A	H2A2	H2A3	120.0	120.0
H2A1	C2A	H2A2	H2A3	240.0	240.0
H2A3	C2A	C2	N1	18.8	150.0
C2	C2A	H2A3	H2A1	120.0	120.1
C2	C2A	H2A3	H2A2	240.0	240.1
H2A1	C2A	H2A3	H2A2	120.0	120.0
C4	C5	C6	N1	0.0	0.5
C5	C6	N1	H6	180.0	179.8
N1	C6	C5	C5A	180.0	180.3
C4	C5	C6	C5A	180.0	180.2
N1	C6	C5	H6	180.0	180.2
C6	C5	C5A	O4P	233.5	0.2
C6	C5	C5A	H5A1	353.5	120.3
C6	C5	C5A	H5A2	113.5	240.2
N1	C6	H6	C5	180.0	179.8
H6	C6	C5	C5A	0.0	0.1
C4	C5	C5A	C6	180.0	179.8
C5A	C5	C6	H6	0.0	0.1
O4P	C5A	C5	H5A1	240.0	240.0
O4P	C5A	C5	H5A2	120.0	120.0
C5	C5A	O4P	P	185.3	180.0
H5A1	C5A	C5	H5A2	240.0	240.1
C5	C5A	O4P	H5A1	120.0	120.0
C5	C5A	O4P	H5A2	240.0	240.0
H5A1	C5A	O4P	H5A2	120.0	120.0
C5A	O4P	P	O2P	214.3	305.0
C5A	O4P	P	O3P	94.3	65.0
C5A	O4P	P	O1P	334.3	185.0
C5	C5A	H5A1	O4P	240.0	240.0
C5	C5A	H5A1	H5A2	120.0	119.9
O4P	C5A	H5A1	H5A2	240.0	240.0
H5A1	C5A	O4P	P	65.2	60.0
C5	C5A	H5A2	O4P	120.0	120.0
C5	C5A	H5A2	H5A1	240.0	240.0
O4P	C5A	H5A2	H5A1	120.0	120.0
H5A2	C5A	O4P	P	305.3	300.0
P	O4P	C5A	H5A1	65.2	60.0
P	O4P	C5A	H5A2	305.3	300.0
O3P	P	O4P	O2P	240.0	120.0
O1P	P	O4P	O2P	120.0	240.0
O3P	P	O4P	O1P	120.0	240.0
O4P	P	O3P	HO3P	208.0	60.0
O4P	P	O1P	HO1P	355.5	180.0
O4P	P	O2P	O3P	247.3	120.0
O4P	P	O2P	O1P	112.6	240.0
O3P	P	O2P	O1P	225.3	120.0
O2P	P	O3P	HO3P	95.3	180.0
O2P	P	O1P	HO1P	108.1	60.1
O4P	P	O3P	O2P	112.7	240.0
O4P	P	O3P	O1P	247.4	120.0
O1P	P	O3P	O2P	225.3	120.0
O3P	P	O1P	HO1P	242.9	300.1
O4P	P	O1P	O2P	247.4	120.0
O4P	P	O1P	O3P	112.6	240.0
O3P	P	O1P	O2P	134.7	240.0
O1P	P	O3P	HO3P	320.6	300.0
HO3P	O3P	P	O2P	95.3	180.0
HO3P	O3P	P	O1P	320.6	300.0
HO1P	O1P	P	O2P	108.1	60.1