PDB Chemical Component PSU
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PSU
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.371 |
1.344 |
| N1 |
C6 |
1.326 |
1.368 |
| N1 |
HN1 |
1.020 |
0.970 |
| C2 |
N3 |
1.365 |
1.345 |
| C2 |
O2 |
1.214 |
1.216 |
| N3 |
C4 |
1.381 |
1.349 |
| N3 |
HN3 |
1.021 |
0.970 |
| C4 |
C5 |
1.439 |
1.414 |
| C4 |
O4 |
1.228 |
1.219 |
| C5 |
C6 |
1.335 |
1.350 |
| C5 |
C1' |
1.519 |
1.507 |
| C6 |
H6 |
1.102 |
1.080 |
| C1' |
C2' |
1.530 |
1.544 |
| C1' |
O4' |
1.420 |
1.444 |
| C1' |
H1' |
1.115 |
1.090 |
| C2' |
O2' |
1.414 |
1.428 |
| C2' |
C3' |
1.523 |
1.545 |
| C2' |
H2' |
1.115 |
1.090 |
| O2' |
HO2' |
0.949 |
0.967 |
| C3' |
C4' |
1.520 |
1.544 |
| C3' |
O3' |
1.422 |
1.428 |
| C3' |
H3' |
1.115 |
1.090 |
| C4' |
O4' |
1.448 |
1.446 |
| C4' |
C5' |
1.513 |
1.529 |
| C4' |
H4' |
1.114 |
1.090 |
| O3' |
HO3' |
0.950 |
0.967 |
| C5' |
O5' |
1.427 |
1.428 |
| C5' |
H5' |
1.115 |
1.089 |
| C5' |
H5'' |
1.115 |
1.090 |
| O5' |
P |
1.591 |
1.611 |
| P |
OP1 |
1.487 |
1.479 |
| P |
OP2 |
1.484 |
1.610 |
| P |
OP3 |
1.611 |
1.609 |
| OP2 |
HOP2 |
0.950 |
0.967 |
| OP3 |
HOP3 |
0.950 |
0.966 |
Bond Angles for PSU
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
123.8 |
120.6 |
| C2 |
N1 |
HN1 |
107.1 |
119.7 |
| N1 |
C2 |
N3 |
114.2 |
121.0 |
| N1 |
C2 |
O2 |
123.0 |
119.6 |
| C6 |
N1 |
HN1 |
107.2 |
119.7 |
| N1 |
C6 |
C5 |
121.9 |
119.7 |
| N1 |
C6 |
H6 |
118.6 |
120.1 |
| N3 |
C2 |
O2 |
122.7 |
119.5 |
| C2 |
N3 |
C4 |
126.0 |
120.2 |
| C2 |
N3 |
HN3 |
116.3 |
120.0 |
| C4 |
N3 |
HN3 |
117.7 |
119.8 |
| N3 |
C4 |
C5 |
114.8 |
119.4 |
| N3 |
C4 |
O4 |
119.2 |
120.3 |
| C5 |
C4 |
O4 |
126.0 |
120.3 |
| C4 |
C5 |
C6 |
119.3 |
119.1 |
| C4 |
C5 |
C1' |
118.2 |
120.5 |
| C6 |
C5 |
C1' |
121.7 |
120.4 |
| C5 |
C6 |
H6 |
119.4 |
120.2 |
| C5 |
C1' |
C2' |
113.8 |
110.4 |
| C5 |
C1' |
O4' |
108.7 |
110.4 |
| C5 |
C1' |
H1' |
106.4 |
110.3 |
| C2' |
C1' |
O4' |
107.5 |
104.8 |
| C2' |
C1' |
H1' |
107.6 |
110.3 |
| C1' |
C2' |
O2' |
110.2 |
110.7 |
| C1' |
C2' |
C3' |
101.6 |
104.0 |
| C1' |
C2' |
H2' |
114.9 |
110.5 |
| O4' |
C1' |
H1' |
112.9 |
110.4 |
| C1' |
O4' |
C4' |
109.5 |
105.4 |
| O2' |
C2' |
C3' |
112.0 |
110.5 |
| O2' |
C2' |
H2' |
105.1 |
110.5 |
| C2' |
O2' |
HO2' |
110.2 |
106.8 |
| C3' |
C2' |
H2' |
113.2 |
110.5 |
| C2' |
C3' |
C4' |
102.0 |
104.2 |
| C2' |
C3' |
O3' |
110.4 |
110.5 |
| C2' |
C3' |
H3' |
113.9 |
110.4 |
| C4' |
C3' |
O3' |
110.5 |
110.5 |
| C4' |
C3' |
H3' |
113.9 |
110.5 |
| C3' |
C4' |
O4' |
103.5 |
104.7 |
| C3' |
C4' |
C5' |
115.8 |
110.7 |
| C3' |
C4' |
H4' |
109.3 |
110.2 |
| O3' |
C3' |
H3' |
106.1 |
110.5 |
| C3' |
O3' |
HO3' |
110.4 |
106.8 |
| O4' |
C4' |
C5' |
109.3 |
110.4 |
| O4' |
C4' |
H4' |
115.8 |
110.4 |
| C5' |
C4' |
H4' |
103.6 |
110.3 |
| C4' |
C5' |
O5' |
110.3 |
109.5 |
| C4' |
C5' |
H5' |
111.9 |
109.5 |
| C4' |
C5' |
H5'' |
111.9 |
109.4 |
| O5' |
C5' |
H5' |
111.9 |
109.5 |
| O5' |
C5' |
H5'' |
111.9 |
109.5 |
| C5' |
O5' |
P |
120.5 |
106.8 |
| H5' |
C5' |
H5'' |
98.6 |
109.5 |
| O5' |
P |
OP1 |
108.5 |
109.4 |
| O5' |
P |
OP2 |
107.6 |
109.5 |
| O5' |
P |
OP3 |
103.8 |
109.5 |
| OP1 |
P |
OP2 |
120.0 |
109.5 |
| OP1 |
P |
OP3 |
108.3 |
109.5 |
| OP2 |
P |
OP3 |
107.6 |
109.4 |
| P |
OP2 |
HOP2 |
107.6 |
106.8 |
| P |
OP3 |
HOP3 |
103.8 |
106.9 |
Torsion Angles for PSU
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
N1 |
C2 |
HN1 |
125.3 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
359.9 |
0.1 |
| C2 |
N1 |
C6 |
H6 |
179.9 |
180.0 |
| N3 |
C2 |
N1 |
O2 |
179.9 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
359.8 |
359.7 |
| N1 |
C2 |
N3 |
HN3 |
179.8 |
179.9 |
| C2 |
N1 |
C6 |
HN1 |
234.7 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
0.2 |
360.0 |
| C6 |
N1 |
C2 |
O2 |
180.3 |
180.0 |
| C4 |
C5 |
C6 |
N1 |
359.9 |
0.1 |
| N1 |
C6 |
C5 |
C1' |
168.8 |
180.0 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
180.1 |
| C2 |
N1 |
HN1 |
C6 |
134.8 |
180.0 |
| HN1 |
N1 |
C2 |
N3 |
234.9 |
180.0 |
| HN1 |
N1 |
C2 |
O2 |
55.0 |
360.0 |
| HN1 |
N1 |
C6 |
C5 |
125.2 |
180.1 |
| HN1 |
N1 |
C6 |
H6 |
305.2 |
360.0 |
| N3 |
C2 |
N1 |
C6 |
0.2 |
360.0 |
| N3 |
C2 |
N1 |
HN1 |
234.9 |
180.0 |
| N1 |
C2 |
N3 |
O2 |
180.1 |
180.0 |
| C4 |
N3 |
C2 |
HN3 |
180.0 |
179.8 |
| C2 |
N3 |
C4 |
C5 |
360.0 |
0.5 |
| C2 |
N3 |
C4 |
O4 |
180.0 |
180.0 |
| O2 |
C2 |
N1 |
C6 |
180.3 |
180.0 |
| O2 |
C2 |
N1 |
HN1 |
55.0 |
360.0 |
| N1 |
C2 |
O2 |
N3 |
179.9 |
180.0 |
| O2 |
C2 |
N3 |
C4 |
179.7 |
179.8 |
| O2 |
C2 |
N3 |
HN3 |
359.7 |
360.0 |
| C4 |
N3 |
C2 |
O2 |
179.7 |
179.8 |
| C2 |
N3 |
C4 |
HN3 |
180.0 |
180.2 |
| C5 |
C4 |
N3 |
O4 |
180.0 |
180.5 |
| N3 |
C4 |
C5 |
C6 |
0.2 |
359.6 |
| N3 |
C4 |
C5 |
C1' |
190.8 |
179.7 |
| HN3 |
N3 |
C2 |
O2 |
359.7 |
360.0 |
| C2 |
N3 |
HN3 |
C4 |
180.0 |
179.8 |
| HN3 |
N3 |
C4 |
C5 |
180.0 |
180.3 |
| HN3 |
N3 |
C4 |
O4 |
0.0 |
359.8 |
| N1 |
C6 |
C5 |
C4 |
359.9 |
0.1 |
| C5 |
C4 |
N3 |
HN3 |
180.0 |
180.3 |
| N3 |
C4 |
C5 |
O4 |
180.0 |
179.5 |
| C6 |
C5 |
C4 |
C1' |
169.3 |
179.9 |
| C4 |
C5 |
C6 |
H6 |
179.9 |
180.2 |
| C4 |
C5 |
C1' |
C2' |
67.3 |
299.7 |
| C4 |
C5 |
C1' |
O4' |
187.1 |
55.2 |
| C4 |
C5 |
C1' |
H1' |
308.9 |
177.5 |
| O4 |
C4 |
N3 |
HN3 |
0.0 |
359.8 |
| N3 |
C4 |
O4 |
C5 |
180.0 |
180.5 |
| O4 |
C4 |
C5 |
C6 |
180.2 |
180.1 |
| O4 |
C4 |
C5 |
C1' |
10.8 |
0.2 |
| C5 |
C6 |
N1 |
HN1 |
125.2 |
180.1 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
179.9 |
| C6 |
C5 |
C4 |
O4 |
180.2 |
180.1 |
| C4 |
C5 |
C6 |
C1' |
191.0 |
180.1 |
| C6 |
C5 |
C1' |
C2' |
258.2 |
119.9 |
| C6 |
C5 |
C1' |
O4' |
18.0 |
235.3 |
| C6 |
C5 |
C1' |
H1' |
139.8 |
357.7 |
| C1' |
C5 |
C4 |
O4 |
10.8 |
0.2 |
| C4 |
C5 |
C1' |
C6 |
169.1 |
179.9 |
| C1' |
C5 |
C6 |
H6 |
348.8 |
0.1 |
| C2' |
C1' |
C5 |
O4' |
240.2 |
244.5 |
| C2' |
C1' |
C5 |
H1' |
118.4 |
122.2 |
| C5 |
C1' |
C2' |
O2' |
217.2 |
261.6 |
| C5 |
C1' |
C2' |
C3' |
98.3 |
142.9 |
| C5 |
C1' |
C2' |
H2' |
335.7 |
24.3 |
| O4' |
C1' |
C5 |
H1' |
238.1 |
237.7 |
| C5 |
C1' |
O4' |
C4' |
234.4 |
200.7 |
| H6 |
C6 |
N1 |
HN1 |
305.2 |
360.0 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
180.1 |
| H6 |
C6 |
C5 |
C1' |
348.8 |
0.1 |
| C5 |
C1' |
C2' |
O4' |
120.4 |
118.9 |
| C5 |
C1' |
C2' |
H1' |
242.3 |
237.8 |
| O4' |
C1' |
C2' |
H1' |
121.9 |
118.9 |
| C2' |
C1' |
O4' |
C4' |
358.0 |
319.6 |
| O2' |
C2' |
C1' |
C3' |
119.0 |
118.7 |
| O2' |
C2' |
C1' |
H2' |
241.5 |
237.3 |
| C1' |
C2' |
O2' |
HO2' |
180.0 |
183.8 |
| C3' |
C2' |
C1' |
H2' |
122.6 |
118.6 |
| C1' |
C2' |
C3' |
C4' |
36.4 |
359.9 |
| C1' |
C2' |
C3' |
O3' |
153.9 |
118.7 |
| C1' |
C2' |
C3' |
H3' |
273.2 |
241.3 |
| C5 |
C1' |
O4' |
C2' |
236.4 |
241.1 |
| C5 |
C1' |
O4' |
H1' |
117.8 |
122.3 |
| C2' |
C1' |
O4' |
H1' |
241.4 |
241.2 |
| O4' |
C1' |
C2' |
O2' |
96.8 |
142.7 |
| O4' |
C1' |
C2' |
C3' |
337.9 |
24.0 |
| O4' |
C1' |
C2' |
H2' |
215.3 |
265.4 |
| C3' |
C4' |
O4' |
C1' |
25.6 |
40.3 |
| C1' |
O4' |
C4' |
C5' |
149.5 |
159.5 |
| C1' |
O4' |
C4' |
H4' |
266.0 |
281.7 |
| C5 |
C1' |
H1' |
C2' |
122.4 |
122.2 |
| C5 |
C1' |
H1' |
O4' |
240.9 |
237.6 |
| C2' |
C1' |
H1' |
O4' |
118.5 |
115.4 |
| H1' |
C1' |
C2' |
O2' |
334.9 |
23.9 |
| H1' |
C1' |
C2' |
C3' |
216.0 |
265.1 |
| H1' |
C1' |
C2' |
H2' |
93.4 |
146.5 |
| H1' |
C1' |
O4' |
C4' |
116.5 |
78.4 |
| O2' |
C2' |
C1' |
O4' |
96.8 |
142.7 |
| O2' |
C2' |
C1' |
H1' |
334.9 |
23.9 |
| C1' |
C2' |
O2' |
C3' |
247.6 |
245.3 |
| C1' |
C2' |
O2' |
H2' |
124.3 |
122.7 |
| C3' |
C2' |
O2' |
H2' |
236.7 |
237.4 |
| O2' |
C2' |
C3' |
C4' |
278.8 |
241.1 |
| O2' |
C2' |
C3' |
O3' |
36.3 |
359.8 |
| O2' |
C2' |
C3' |
H3' |
155.5 |
122.4 |
| C3' |
C2' |
C1' |
O4' |
337.9 |
24.0 |
| C3' |
C2' |
C1' |
H1' |
216.0 |
265.1 |
| C1' |
C2' |
C3' |
O2' |
117.7 |
118.8 |
| C1' |
C2' |
C3' |
H2' |
236.3 |
241.4 |
| O2' |
C2' |
C3' |
H2' |
118.6 |
122.6 |
| C3' |
C2' |
O2' |
HO2' |
292.3 |
298.6 |
| C4' |
C3' |
C2' |
O3' |
242.5 |
241.2 |
| C4' |
C3' |
C2' |
H3' |
123.2 |
118.6 |
| C2' |
C3' |
C4' |
O4' |
321.4 |
336.2 |
| C2' |
C3' |
C4' |
C5' |
201.9 |
217.3 |
| C2' |
C3' |
C4' |
H4' |
85.4 |
94.9 |
| O3' |
C3' |
C2' |
H3' |
240.8 |
237.4 |
| C2' |
C3' |
O3' |
HO3' |
179.9 |
63.3 |
| H2' |
C2' |
C1' |
O4' |
215.3 |
265.4 |
| H2' |
C2' |
C1' |
H1' |
93.4 |
146.5 |
| C1' |
C2' |
H2' |
O2' |
238.7 |
237.2 |
| C1' |
C2' |
H2' |
C3' |
116.1 |
114.6 |
| O2' |
C2' |
H2' |
C3' |
237.4 |
237.4 |
| H2' |
C2' |
O2' |
HO2' |
55.6 |
61.2 |
| H2' |
C2' |
C3' |
C4' |
160.2 |
118.5 |
| H2' |
C2' |
C3' |
O3' |
277.7 |
237.3 |
| H2' |
C2' |
C3' |
H3' |
36.9 |
359.9 |
| HO2' |
O2' |
C2' |
C3' |
292.3 |
298.6 |
| HO2' |
O2' |
C2' |
H2' |
55.6 |
61.2 |
| C1' |
O4' |
C4' |
C3' |
25.6 |
40.3 |
| C4' |
C3' |
C2' |
H2' |
160.2 |
118.5 |
| C2' |
C3' |
C4' |
O3' |
117.5 |
118.8 |
| C2' |
C3' |
C4' |
H3' |
236.7 |
241.4 |
| O3' |
C3' |
C4' |
H3' |
119.3 |
122.6 |
| C4' |
C3' |
O3' |
HO3' |
292.1 |
178.1 |
| O4' |
C4' |
C3' |
C5' |
119.5 |
119.0 |
| O4' |
C4' |
C3' |
H4' |
236.0 |
241.3 |
| C5' |
C4' |
C3' |
H4' |
116.5 |
122.3 |
| C3' |
C4' |
C5' |
O5' |
69.4 |
176.9 |
| C3' |
C4' |
C5' |
H5' |
194.7 |
296.9 |
| C3' |
C4' |
C5' |
H5'' |
304.2 |
56.9 |
| O3' |
C3' |
C2' |
H2' |
277.7 |
237.3 |
| C2' |
C3' |
O3' |
C4' |
247.8 |
245.2 |
| C2' |
C3' |
O3' |
H3' |
123.9 |
122.6 |
| C4' |
C3' |
O3' |
H3' |
236.1 |
237.4 |
| O3' |
C3' |
C4' |
O4' |
203.9 |
217.5 |
| O3' |
C3' |
C4' |
C5' |
84.4 |
98.5 |
| O3' |
C3' |
C4' |
H4' |
327.9 |
336.2 |
| H3' |
C3' |
C2' |
H2' |
36.9 |
359.9 |
| C2' |
C3' |
H3' |
C4' |
116.5 |
114.7 |
| C2' |
C3' |
H3' |
O3' |
238.3 |
237.4 |
| C4' |
C3' |
H3' |
O3' |
121.8 |
122.6 |
| H3' |
C3' |
C4' |
O4' |
84.7 |
94.9 |
| H3' |
C3' |
C4' |
C5' |
325.1 |
335.9 |
| H3' |
C3' |
C4' |
H4' |
208.6 |
213.5 |
| H3' |
C3' |
O3' |
HO3' |
56.0 |
300.7 |
| C4' |
O4' |
C1' |
H1' |
116.5 |
78.4 |
| O4' |
C4' |
C3' |
O3' |
203.9 |
217.5 |
| O4' |
C4' |
C3' |
H3' |
84.7 |
94.9 |
| C3' |
C4' |
O4' |
C5' |
236.1 |
240.8 |
| C3' |
C4' |
O4' |
H4' |
119.6 |
118.6 |
| C5' |
C4' |
O4' |
H4' |
243.5 |
237.8 |
| O4' |
C4' |
C5' |
O5' |
313.1 |
61.4 |
| O4' |
C4' |
C5' |
H5' |
78.3 |
181.4 |
| O4' |
C4' |
C5' |
H5'' |
187.8 |
301.4 |
| C5' |
C4' |
C3' |
O3' |
84.4 |
98.5 |
| C5' |
C4' |
C3' |
H3' |
325.1 |
335.9 |
| C3' |
C4' |
C5' |
O4' |
116.4 |
115.5 |
| C3' |
C4' |
C5' |
H4' |
240.4 |
237.7 |
| O4' |
C4' |
C5' |
H4' |
124.0 |
122.2 |
| O5' |
C5' |
C4' |
H5' |
234.8 |
240.0 |
| O5' |
C5' |
C4' |
H5'' |
125.2 |
120.0 |
| C4' |
C5' |
O5' |
P |
179.9 |
180.0 |
| H5' |
C5' |
C4' |
H5'' |
250.5 |
240.0 |
| H4' |
C4' |
C3' |
O3' |
327.9 |
336.2 |
| H4' |
C4' |
C3' |
H3' |
208.6 |
213.5 |
| C3' |
C4' |
H4' |
O4' |
243.6 |
244.8 |
| C3' |
C4' |
H4' |
C5' |
124.0 |
122.6 |
| O4' |
C4' |
H4' |
C5' |
240.4 |
237.8 |
| H4' |
C4' |
C5' |
O5' |
189.1 |
299.2 |
| H4' |
C4' |
C5' |
H5' |
314.3 |
59.2 |
| H4' |
C4' |
C5' |
H5'' |
63.8 |
179.2 |
| HO3' |
O3' |
C3' |
H3' |
56.0 |
300.7 |
| O5' |
C5' |
C4' |
H4' |
189.1 |
299.2 |
| C4' |
C5' |
O5' |
H5' |
125.2 |
120.0 |
| C4' |
C5' |
O5' |
H5'' |
234.8 |
240.0 |
| H5' |
C5' |
O5' |
H5'' |
109.5 |
120.0 |
| C5' |
O5' |
P |
OP1 |
162.1 |
60.0 |
| C5' |
O5' |
P |
OP2 |
30.9 |
180.0 |
| C5' |
O5' |
P |
OP3 |
277.1 |
300.0 |
| H5' |
C5' |
C4' |
H4' |
314.3 |
59.2 |
| C4' |
C5' |
H5' |
O5' |
235.6 |
240.0 |
| C4' |
C5' |
H5' |
H5'' |
117.8 |
120.0 |
| O5' |
C5' |
H5' |
H5'' |
242.2 |
240.0 |
| H5' |
C5' |
O5' |
P |
54.7 |
60.0 |
| H5'' |
C5' |
C4' |
H4' |
63.8 |
179.2 |
| C4' |
C5' |
H5'' |
O5' |
124.4 |
120.0 |
| C4' |
C5' |
H5'' |
H5' |
242.2 |
240.0 |
| O5' |
C5' |
H5'' |
H5' |
117.8 |
120.0 |
| H5'' |
C5' |
O5' |
P |
305.1 |
300.0 |
| P |
O5' |
C5' |
H5' |
54.7 |
60.0 |
| P |
O5' |
C5' |
H5'' |
305.1 |
300.0 |
| OP1 |
P |
O5' |
OP2 |
131.2 |
240.0 |
| OP1 |
P |
O5' |
OP3 |
245.0 |
120.0 |
| OP2 |
P |
O5' |
OP3 |
113.8 |
240.0 |
| O5' |
P |
OP2 |
HOP2 |
180.0 |
180.0 |
| O5' |
P |
OP3 |
HOP3 |
180.0 |
300.0 |
| O5' |
P |
OP1 |
OP2 |
235.9 |
120.0 |
| O5' |
P |
OP1 |
OP3 |
112.1 |
240.0 |
| OP2 |
P |
OP1 |
OP3 |
236.2 |
120.0 |
| OP1 |
P |
OP2 |
HOP2 |
55.5 |
300.0 |
| OP1 |
P |
OP3 |
HOP3 |
295.2 |
180.0 |
| O5' |
P |
OP2 |
OP1 |
124.5 |
240.0 |
| O5' |
P |
OP2 |
OP3 |
248.7 |
120.0 |
| OP1 |
P |
OP2 |
OP3 |
124.2 |
240.0 |
| OP2 |
P |
OP3 |
HOP3 |
66.2 |
60.0 |
| O5' |
P |
OP3 |
OP1 |
244.8 |
120.0 |
| O5' |
P |
OP3 |
OP2 |
113.9 |
240.0 |
| OP1 |
P |
OP3 |
OP2 |
229.0 |
120.0 |
| OP3 |
P |
OP2 |
HOP2 |
291.3 |
60.0 |
| HOP2 |
OP2 |
P |
OP3 |
291.3 |
60.0 |