PDB Chemical Component PSN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PSN
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.427 |
1.386 |
C1 |
C6 |
1.434 |
1.381 |
C1 |
H1 |
1.104 |
1.081 |
C2 |
C3 |
1.431 |
1.377 |
C2 |
H2 |
1.104 |
1.079 |
C3 |
C4 |
1.436 |
1.401 |
C3 |
H3 |
1.103 |
1.079 |
C4 |
C5 |
1.425 |
1.404 |
C4 |
C7 |
1.510 |
1.467 |
C5 |
C6 |
1.455 |
1.387 |
C5 |
O8 |
1.436 |
1.356 |
C6 |
H6 |
1.103 |
1.079 |
C7 |
O25 |
1.351 |
1.213 |
C7 |
H7 |
1.103 |
1.081 |
O8 |
P9 |
1.603 |
1.610 |
P9 |
O10 |
1.533 |
1.610 |
P9 |
O11 |
1.556 |
1.609 |
P9 |
O32 |
1.538 |
1.481 |
O10 |
C12 |
1.478 |
1.429 |
C12 |
C13 |
1.583 |
1.508 |
C12 |
H121 |
1.115 |
1.090 |
C12 |
H122 |
1.115 |
1.090 |
C13 |
C16 |
1.457 |
1.383 |
C13 |
C20 |
1.462 |
1.382 |
C16 |
C17 |
1.430 |
1.383 |
C16 |
H16 |
1.103 |
1.080 |
C17 |
C18 |
1.462 |
1.383 |
C17 |
H17 |
1.103 |
1.080 |
C18 |
C19 |
1.442 |
1.383 |
C18 |
H18 |
1.103 |
1.080 |
C19 |
C20 |
1.426 |
1.382 |
C19 |
H19 |
1.103 |
1.079 |
C20 |
H20 |
1.103 |
1.080 |
O32 |
H32 |
0.950 |
|
Bond Angles for PSN
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
120.0 |
120.5 |
C2 |
C1 |
H1 |
119.7 |
119.7 |
C1 |
C2 |
C3 |
119.5 |
120.3 |
C1 |
C2 |
H2 |
120.1 |
119.9 |
C6 |
C1 |
H1 |
120.2 |
119.8 |
C1 |
C6 |
C5 |
118.8 |
120.1 |
C1 |
C6 |
H6 |
119.8 |
120.0 |
C3 |
C2 |
H2 |
120.4 |
119.8 |
C2 |
C3 |
C4 |
122.5 |
119.9 |
C2 |
C3 |
H3 |
118.6 |
120.1 |
C4 |
C3 |
H3 |
118.9 |
120.1 |
C3 |
C4 |
C5 |
117.0 |
119.6 |
C3 |
C4 |
C7 |
119.4 |
120.2 |
C5 |
C4 |
C7 |
123.7 |
120.2 |
C4 |
C5 |
C6 |
122.1 |
119.7 |
C4 |
C5 |
O8 |
115.6 |
120.2 |
C4 |
C7 |
O25 |
127.1 |
120.0 |
C4 |
C7 |
H7 |
122.8 |
120.0 |
C6 |
C5 |
O8 |
122.3 |
120.1 |
C5 |
C6 |
H6 |
121.3 |
120.0 |
C5 |
O8 |
P9 |
120.5 |
106.9 |
O25 |
C7 |
H7 |
110.1 |
120.0 |
O8 |
P9 |
O10 |
115.1 |
109.5 |
O8 |
P9 |
O11 |
104.3 |
109.5 |
O8 |
P9 |
O32 |
113.7 |
109.5 |
O10 |
P9 |
O11 |
101.6 |
109.5 |
O10 |
P9 |
O32 |
112.2 |
109.4 |
P9 |
O10 |
C12 |
126.9 |
106.8 |
O11 |
P9 |
O32 |
108.6 |
109.4 |
P9 |
O32 |
H32 |
113.7 |
|
O10 |
C12 |
C13 |
116.3 |
109.5 |
O10 |
C12 |
H121 |
109.8 |
109.5 |
O10 |
C12 |
H122 |
109.8 |
109.5 |
C13 |
C12 |
H121 |
109.8 |
109.5 |
C13 |
C12 |
H122 |
109.8 |
109.4 |
C12 |
C13 |
C16 |
117.4 |
119.9 |
C12 |
C13 |
C20 |
121.0 |
120.0 |
H121 |
C12 |
H122 |
100.4 |
109.5 |
C16 |
C13 |
C20 |
121.6 |
120.0 |
C13 |
C16 |
C17 |
117.6 |
120.0 |
C13 |
C16 |
H16 |
122.1 |
120.1 |
C13 |
C20 |
C19 |
119.8 |
120.0 |
C13 |
C20 |
H20 |
121.3 |
120.0 |
C17 |
C16 |
H16 |
120.3 |
120.0 |
C16 |
C17 |
C18 |
120.6 |
120.0 |
C16 |
C17 |
H17 |
118.6 |
120.0 |
C18 |
C17 |
H17 |
120.8 |
120.0 |
C17 |
C18 |
C19 |
121.1 |
120.0 |
C17 |
C18 |
H18 |
120.2 |
120.0 |
C19 |
C18 |
H18 |
118.8 |
120.0 |
C18 |
C19 |
C20 |
118.8 |
120.0 |
C18 |
C19 |
H19 |
121.2 |
120.0 |
C20 |
C19 |
H19 |
120.1 |
120.0 |
C19 |
C20 |
H20 |
118.9 |
120.0 |
Torsion Angles for PSN
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
H1 |
180.0 |
179.9 |
C2 |
C1 |
C6 |
C5 |
355.5 |
360.0 |
C2 |
C1 |
C6 |
H6 |
175.5 |
180.0 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
C1 |
C2 |
C3 |
C4 |
1.2 |
359.7 |
C1 |
C2 |
C3 |
H3 |
181.2 |
180.0 |
C2 |
C1 |
C6 |
H1 |
180.0 |
180.1 |
C6 |
C1 |
C2 |
C3 |
2.4 |
0.0 |
C6 |
C1 |
C2 |
H2 |
182.4 |
180.0 |
C4 |
C5 |
C6 |
C1 |
3.2 |
0.3 |
C1 |
C6 |
C5 |
O8 |
180.1 |
180.0 |
C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
C2 |
C1 |
H1 |
C6 |
180.0 |
179.9 |
H1 |
C1 |
C2 |
C3 |
182.4 |
180.1 |
H1 |
C1 |
C2 |
H2 |
2.4 |
0.1 |
H1 |
C1 |
C6 |
C5 |
175.6 |
179.9 |
H1 |
C1 |
C6 |
H6 |
355.6 |
359.9 |
C3 |
C2 |
C1 |
C6 |
2.4 |
0.0 |
C3 |
C2 |
C1 |
H1 |
182.4 |
180.1 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
C4 |
C3 |
C2 |
H3 |
180.0 |
179.7 |
C2 |
C3 |
C4 |
C5 |
357.5 |
0.5 |
C2 |
C3 |
C4 |
C7 |
177.9 |
180.0 |
H2 |
C2 |
C1 |
C6 |
182.4 |
180.0 |
H2 |
C2 |
C1 |
H1 |
2.4 |
0.1 |
C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
H2 |
C2 |
C3 |
C4 |
181.2 |
179.7 |
H2 |
C2 |
C3 |
H3 |
1.2 |
0.1 |
C4 |
C3 |
C2 |
H2 |
181.2 |
179.7 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.3 |
C5 |
C4 |
C3 |
C7 |
179.6 |
180.5 |
C3 |
C4 |
C5 |
C6 |
0.3 |
359.5 |
C3 |
C4 |
C5 |
O8 |
183.2 |
179.7 |
C3 |
C4 |
C7 |
O25 |
256.9 |
0.0 |
C3 |
C4 |
C7 |
H7 |
76.9 |
180.0 |
H3 |
C3 |
C2 |
H2 |
1.2 |
0.1 |
C2 |
C3 |
H3 |
C4 |
180.0 |
179.7 |
H3 |
C3 |
C4 |
C5 |
177.5 |
180.2 |
H3 |
C3 |
C4 |
C7 |
357.9 |
359.7 |
C1 |
C6 |
C5 |
C4 |
3.2 |
0.3 |
C5 |
C4 |
C3 |
H3 |
177.5 |
180.2 |
C3 |
C4 |
C5 |
C7 |
180.4 |
179.5 |
C5 |
C4 |
C7 |
O25 |
77.3 |
179.5 |
C5 |
C4 |
C7 |
H7 |
257.3 |
359.5 |
C6 |
C5 |
C4 |
O8 |
177.1 |
179.8 |
C4 |
C5 |
C6 |
H6 |
183.2 |
180.2 |
C4 |
C5 |
O8 |
P9 |
266.5 |
254.8 |
C7 |
C4 |
C3 |
H3 |
357.9 |
359.7 |
C3 |
C4 |
C7 |
C5 |
179.6 |
180.5 |
C7 |
C4 |
C5 |
C6 |
179.9 |
180.0 |
C7 |
C4 |
C5 |
O8 |
2.8 |
0.2 |
O25 |
C7 |
C4 |
H7 |
180.0 |
180.1 |
C5 |
C6 |
C1 |
H1 |
175.6 |
179.9 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
C7 |
179.9 |
180.0 |
C4 |
C5 |
C6 |
O8 |
183.1 |
180.2 |
C6 |
C5 |
O8 |
P9 |
89.4 |
75.0 |
O8 |
C5 |
C4 |
C7 |
2.8 |
0.2 |
C4 |
C5 |
O8 |
C6 |
177.1 |
179.8 |
O8 |
C5 |
C6 |
H6 |
0.1 |
360.0 |
C5 |
O8 |
P9 |
O10 |
279.8 |
175.0 |
C5 |
O8 |
P9 |
O11 |
169.4 |
295.0 |
C5 |
O8 |
P9 |
O32 |
51.2 |
55.0 |
H6 |
C6 |
C1 |
H1 |
355.6 |
359.9 |
C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
H6 |
C6 |
C5 |
O8 |
0.1 |
360.0 |
C4 |
C7 |
O25 |
H7 |
180.0 |
179.9 |
C4 |
C7 |
H7 |
O25 |
180.0 |
180.1 |
O10 |
P9 |
O8 |
O11 |
110.4 |
239.9 |
O10 |
P9 |
O8 |
O32 |
228.6 |
120.0 |
O8 |
P9 |
O10 |
C12 |
37.2 |
185.0 |
O11 |
P9 |
O8 |
O32 |
118.2 |
240.1 |
O8 |
P9 |
O32 |
H32 |
180.0 |
|
O8 |
P9 |
O10 |
O11 |
248.0 |
120.0 |
O8 |
P9 |
O10 |
O32 |
132.1 |
240.0 |
O11 |
P9 |
O10 |
O32 |
244.1 |
120.0 |
O10 |
P9 |
O32 |
H32 |
312.7 |
|
P9 |
O10 |
C12 |
C13 |
68.5 |
180.0 |
P9 |
O10 |
C12 |
H121 |
303.2 |
300.0 |
P9 |
O10 |
C12 |
H122 |
193.8 |
60.1 |
O8 |
P9 |
O11 |
O10 |
119.9 |
239.9 |
O8 |
P9 |
O11 |
O32 |
238.4 |
120.0 |
O10 |
P9 |
O11 |
O32 |
118.5 |
240.0 |
O11 |
P9 |
O10 |
C12 |
149.3 |
64.9 |
O11 |
P9 |
O32 |
H32 |
64.3 |
|
O8 |
P9 |
O32 |
O10 |
227.2 |
120.0 |
O8 |
P9 |
O32 |
O11 |
115.7 |
240.0 |
O10 |
P9 |
O32 |
O11 |
248.4 |
120.0 |
O32 |
P9 |
O10 |
C12 |
265.2 |
305.0 |
C12 |
O10 |
P9 |
O11 |
149.3 |
64.9 |
C12 |
O10 |
P9 |
O32 |
265.2 |
305.0 |
C13 |
C12 |
O10 |
H121 |
125.3 |
240.0 |
C13 |
C12 |
O10 |
H122 |
234.7 |
119.9 |
O10 |
C12 |
C13 |
C16 |
173.4 |
90.0 |
O10 |
C12 |
C13 |
C20 |
351.8 |
269.8 |
H121 |
C12 |
O10 |
H122 |
109.4 |
239.9 |
O10 |
C12 |
C13 |
H121 |
234.7 |
120.1 |
O10 |
C12 |
C13 |
H122 |
125.3 |
240.0 |
H121 |
C12 |
C13 |
H122 |
250.6 |
120.0 |
C16 |
C13 |
C12 |
C20 |
181.6 |
180.2 |
C12 |
C13 |
C16 |
C17 |
184.4 |
180.0 |
C12 |
C13 |
C16 |
H16 |
4.4 |
0.0 |
C12 |
C13 |
C20 |
C19 |
177.0 |
179.8 |
C12 |
C13 |
C20 |
H20 |
357.0 |
0.2 |
O10 |
C12 |
H121 |
C13 |
128.9 |
240.0 |
O10 |
C12 |
H121 |
H122 |
244.5 |
120.0 |
C13 |
C12 |
H121 |
H122 |
115.5 |
240.1 |
H121 |
C12 |
C13 |
C16 |
298.7 |
329.9 |
H121 |
C12 |
C13 |
C20 |
117.1 |
149.7 |
O10 |
C12 |
H122 |
C13 |
231.1 |
120.0 |
O10 |
C12 |
H122 |
H121 |
115.5 |
239.9 |
C13 |
C12 |
H122 |
H121 |
244.5 |
120.0 |
H122 |
C12 |
C13 |
C16 |
48.1 |
210.0 |
H122 |
C12 |
C13 |
C20 |
226.5 |
29.8 |
C16 |
C13 |
C12 |
H121 |
298.7 |
329.9 |
C16 |
C13 |
C12 |
H122 |
48.1 |
210.0 |
C12 |
C13 |
C16 |
C20 |
178.4 |
179.8 |
C16 |
C13 |
C20 |
C19 |
355.4 |
359.6 |
C16 |
C13 |
C20 |
H20 |
175.3 |
180.0 |
C17 |
C16 |
C13 |
H16 |
180.0 |
180.0 |
C13 |
C16 |
C17 |
C18 |
359.4 |
360.0 |
C13 |
C16 |
C17 |
H17 |
179.4 |
180.0 |
C20 |
C13 |
C12 |
H121 |
117.1 |
149.7 |
C20 |
C13 |
C12 |
H122 |
226.5 |
29.8 |
C12 |
C13 |
C20 |
C16 |
181.7 |
180.2 |
C20 |
C13 |
C16 |
C17 |
6.0 |
0.2 |
C20 |
C13 |
C16 |
H16 |
186.0 |
180.2 |
C18 |
C19 |
C20 |
C13 |
357.7 |
0.4 |
C13 |
C20 |
C19 |
H19 |
177.7 |
180.3 |
C19 |
C20 |
C13 |
H20 |
180.0 |
179.6 |
C17 |
C16 |
C13 |
C20 |
6.0 |
0.2 |
C13 |
C16 |
C17 |
H16 |
180.0 |
180.0 |
C18 |
C17 |
C16 |
H17 |
180.0 |
180.0 |
C16 |
C17 |
C18 |
C19 |
353.7 |
360.0 |
C16 |
C17 |
C18 |
H18 |
173.7 |
179.9 |
H16 |
C16 |
C13 |
C20 |
186.0 |
180.2 |
C13 |
C16 |
H16 |
C17 |
180.0 |
180.0 |
H16 |
C16 |
C17 |
C18 |
179.4 |
180.0 |
H16 |
C16 |
C17 |
H17 |
359.4 |
360.0 |
C18 |
C17 |
C16 |
H16 |
179.4 |
180.0 |
C16 |
C17 |
C18 |
H17 |
180.0 |
180.0 |
C19 |
C18 |
C17 |
H18 |
180.0 |
180.0 |
C17 |
C18 |
C19 |
C20 |
7.7 |
359.8 |
C17 |
C18 |
C19 |
H19 |
187.7 |
179.9 |
H17 |
C17 |
C16 |
H16 |
359.4 |
360.0 |
C16 |
C17 |
H17 |
C18 |
180.0 |
180.0 |
H17 |
C17 |
C18 |
C19 |
173.7 |
180.0 |
H17 |
C17 |
C18 |
H18 |
353.6 |
359.9 |
C13 |
C20 |
C19 |
C18 |
357.7 |
0.4 |
C19 |
C18 |
C17 |
H17 |
173.7 |
180.0 |
C17 |
C18 |
C19 |
H18 |
180.0 |
180.0 |
C20 |
C19 |
C18 |
H19 |
180.0 |
179.9 |
C18 |
C19 |
C20 |
H20 |
177.7 |
180.0 |
H18 |
C18 |
C17 |
H17 |
353.6 |
359.9 |
C17 |
C18 |
H18 |
C19 |
180.0 |
180.0 |
H18 |
C18 |
C19 |
C20 |
187.7 |
179.9 |
H18 |
C18 |
C19 |
H19 |
7.7 |
360.0 |
C13 |
C20 |
C19 |
H20 |
180.0 |
180.4 |
C20 |
C19 |
C18 |
H18 |
187.7 |
179.9 |
C18 |
C19 |
C20 |
H19 |
180.0 |
180.1 |
H19 |
C19 |
C18 |
H18 |
7.7 |
360.0 |
C18 |
C19 |
H19 |
C20 |
180.0 |
179.9 |
H19 |
C19 |
C20 |
H20 |
357.8 |
359.9 |
C13 |
C20 |
H20 |
C19 |
180.0 |
179.6 |
H20 |
C20 |
C19 |
H19 |
357.8 |
359.9 |