PDB Chemical Component PRX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PRX

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O2' C2' 1.414 1.429
O2' H2' 0.950 0.967
C2' C1' 1.613 1.544
C2' C3' 1.600 1.545
C2' H1 1.100 1.091
C1' O4' 1.453 1.444
C1' N9 1.490 1.465
C1' H1' 1.100 1.090
O4' C4' 1.484 1.444
C4' C5' 1.542 1.530
C4' C3' 1.660 1.544
C4' H4' 1.100 1.090
C5' O5' 1.456 1.429
C5' H5'1 1.100 1.091
C5' H5'2 1.100 1.090
O5' P 1.630 1.610
P O1P 1.474 1.480
P O2P 1.491 1.610
P O3P 1.524 1.610
O2P H2P 0.950 0.968
O3P C1P 1.466 1.429
C1P C2P 1.514 1.530
C1P H1P1 1.100 1.090
C1P H1P2 1.100 1.090
C2P C3P 1.507 1.529
C2P H2P1 1.100 1.090
C2P H2P2 1.099 1.090
C3P H3P1 1.101 1.091
C3P H3P2 1.100 1.090
C3P H3P3 1.100 1.090
C3' O3' 1.503 1.428
C3' H3' 1.100 1.091
O3' H2 0.950 0.967
N9 C8 1.402 1.363
N9 C4 1.357 1.372
C8 N7 1.349 1.302
C8 H8 1.080 1.080
N7 C5 1.390 1.355
C5 C4 1.424 1.405
C5 C6 1.423 1.405
C4 N3 1.359 1.329
N3 C2 1.350 1.316
C2 N1 1.347 1.321
C2 H3 1.080 1.080
N1 C6 1.396 1.329
C6 N6 1.376 1.383
N6 HN61 1.000 0.970
N6 HN62 1.000 0.970

Bond Angles for PRX

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2' O2' H2' 109.5 114.0
O2' C2' C1' 108.6 110.5
O2' C2' C3' 113.4 110.5
O2' C2' H1 111.9 110.4
C1' C2' C3' 104.1 104.1
C1' C2' H1 109.1 110.5
C2' C1' O4' 106.6 104.8
C2' C1' N9 110.7 110.4
C2' C1' H1' 108.9 110.4
C3' C2' H1 109.3 110.7
C2' C3' C4' 97.8 104.1
C2' C3' O3' 116.9 110.5
C2' C3' H3' 111.5 110.5
O4' C1' N9 109.1 110.4
O4' C1' H1' 111.1 110.4
C1' O4' C4' 111.0 105.3
N9 C1' H1' 110.5 110.4
C1' N9 C8 128.5 126.3
C1' N9 C4 127.5 126.3
O4' C4' C5' 110.2 110.3
O4' C4' C3' 106.8 104.8
O4' C4' H4' 110.5 110.4
C5' C4' C3' 111.4 110.4
C5' C4' H4' 109.6 110.3
C4' C5' O5' 105.9 109.5
C4' C5' H5'1 110.4 109.5
C4' C5' H5'2 110.4 109.5
C3' C4' H4' 108.2 110.5
C4' C3' O3' 105.7 110.5
C4' C3' H3' 110.7 110.5
O5' C5' H5'1 110.4 109.5
O5' C5' H5'2 110.4 109.5
C5' O5' P 118.9 123.0
H5'1 C5' H5'2 109.4 109.4
O5' P O1P 102.7 109.4
O5' P O2P 105.5 109.5
O5' P O3P 106.7 109.5
O1P P O2P 113.5 109.5
O1P P O3P 113.8 109.5
O2P P O3P 113.5 109.5
P O2P H2P 109.5 114.0
P O3P C1P 124.6 123.0
O3P C1P C2P 116.2 109.5
O3P C1P H1P1 107.8 109.4
O3P C1P H1P2 107.8 109.5
C2P C1P H1P1 107.8 109.5
C2P C1P H1P2 107.8 109.5
C1P C2P C3P 111.1 109.5
C1P C2P H2P1 109.1 109.4
C1P C2P H2P2 109.1 109.4
H1P1 C1P H1P2 109.5 109.5
C3P C2P H2P1 109.0 109.5
C3P C2P H2P2 109.1 109.5
C2P C3P H3P1 109.5 109.5
C2P C3P H3P2 109.5 109.5
C2P C3P H3P3 109.5 109.5
H2P1 C2P H2P2 109.5 109.5
H3P1 C3P H3P2 109.5 109.4
H3P1 C3P H3P3 109.5 109.4
H3P2 C3P H3P3 109.4 109.5
O3' C3' H3' 112.9 110.5
C3' O3' H2 109.5 114.1
C8 N9 C4 104.1 107.5
N9 C8 N7 117.5 110.0
N9 C8 H8 121.3 125.0
N9 C4 C5 105.7 106.0
N9 C4 N3 126.0 134.9
N7 C8 H8 121.3 125.0
C8 N7 C5 99.0 109.4
N7 C5 C4 113.8 107.2
N7 C5 C6 130.8 134.6
C4 C5 C6 115.4 118.2
C5 C4 N3 128.3 119.1
C5 C6 N1 115.8 118.5
C5 C6 N6 119.0 120.8
C4 N3 C2 112.2 120.7
N3 C2 N1 125.1 122.5
N3 C2 H3 117.4 118.8
N1 C2 H3 117.4 118.7
C2 N1 C6 123.1 121.2
N1 C6 N6 125.1 120.7
C6 N6 HN61 109.5 120.0
C6 N6 HN62 109.5 120.0
HN61 N6 HN62 109.5 120.0

Torsion Angles for PRX

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C1' C2' O2' C3' 244.8 245.4
C1' C2' O2' H1 120.5 122.6
O2' C2' C1' O4' 92.7 142.6
O2' C2' C1' N9 211.2 261.5
O2' C2' C1' H1' 332.8 23.8
C3' C2' O2' H1 235.7 237.2
O2' C2' C3' C4' 277.3 241.3
O2' C2' C3' O3' 29.3 0.0
O2' C2' C3' H3' 161.3 122.7
H2' O2' C2' C1' 180.0 180.0
H2' O2' C2' C3' 295.2 294.7
H2' O2' C2' H1 59.5 57.4
C1' C2' O2' H2' 180.0 180.0
O2' C2' C1' C3' 121.1 118.6
O2' C2' C1' H1 237.8 237.5
C3' C2' C1' H1 116.6 118.8
C1' C2' C3' C4' 35.1 360.0
C1' C2' C3' O3' 147.1 118.7
C1' C2' C3' H3' 279.1 241.4
O4' C1' C2' N9 241.5 241.2
O4' C1' C2' H1' 119.9 118.8
C2' C1' O4' C4' 6.9 319.5
N9 C1' C2' H1' 238.4 237.7
C2' C1' N9 C8 252.7 265.0
C2' C1' N9 C4 73.0 84.7
C3' C2' O2' H2' 295.2 294.7
O2' C2' C3' C1' 242.2 241.3
O2' C2' C3' H1 125.7 122.6
C1' C2' C3' H1 243.5 241.3
C3' C2' C1' O4' 331.6 24.0
C3' C2' C1' N9 90.1 142.8
C3' C2' C1' H1' 211.7 265.2
O4' C4' C3' C2' 327.7 336.0
C5' C4' C3' C2' 207.2 217.2
C2' C3' C4' H4' 86.6 94.9
C4' C3' C2' O3' 248.0 241.3
C4' C3' C2' H3' 115.9 118.6
O3' C3' C2' H3' 228.0 237.3
C2' C3' O3' H2 180.0 61.4
H1 C2' O2' H2' 59.5 57.4
O2' C2' H1 C1' 120.2 122.6
O2' C2' H1 C3' 233.4 237.3
C1' C2' H1 C3' 113.2 114.7
H1 C2' C1' O4' 215.0 265.2
H1 C2' C1' N9 333.5 24.0
H1 C2' C1' H1' 95.1 146.3
H1 C2' C3' C4' 151.6 118.7
H1 C2' C3' O3' 263.6 237.4
H1 C2' C3' H3' 35.6 0.1
O4' C1' C2' C3' 331.6 24.0
O4' C1' C2' H1 215.0 265.2
C2' C1' O4' N9 119.5 118.8
C2' C1' O4' H1' 241.6 241.2
N9 C1' O4' H1' 122.1 122.3
O4' C1' N9 C8 9.7 20.4
O4' C1' N9 C4 189.9 200.1
C1' O4' C4' C5' 137.8 159.4
C1' O4' C4' C3' 16.6 40.5
C1' O4' C4' H4' 259.2 281.6
N9 C1' C2' C3' 90.1 142.8
N9 C1' C2' H1 333.5 24.0
C2' C1' N9 O4' 243.1 244.6
C2' C1' N9 H1' 120.7 122.3
O4' C1' N9 H1' 237.6 237.7
N9 C1' O4' C4' 247.4 200.7
C8 N9 C1' C4 179.7 180.3
C1' N9 C8 N7 180.3 180.0
C1' N9 C8 H8 0.3 360.0
C1' N9 C4 C5 179.7 179.8
C1' N9 C4 N3 359.6 359.9
H1' C1' C2' C3' 211.7 265.2
H1' C1' C2' H1 95.1 146.3
C2' C1' H1' O4' 117.0 115.4
C2' C1' H1' N9 238.3 237.7
O4' C1' H1' N9 121.2 122.3
H1' C1' O4' C4' 125.4 78.3
H1' C1' N9 C8 132.1 142.7
H1' C1' N9 C4 312.3 322.4
C2' C3' C4' O4' 327.7 336.0
C4' O4' C1' N9 247.4 200.7
C4' O4' C1' H1' 125.4 78.3
C5' C4' O4' C3' 121.2 118.8
C5' C4' O4' H4' 238.7 237.8
O4' C4' C5' O5' 70.3 66.5
O4' C4' C5' H5'1 189.7 186.5
O4' C4' C5' H5'2 310.8 306.4
C3' C4' O4' H4' 117.5 119.0
O4' C4' C3' O3' 206.8 217.4
O4' C4' C3' H3' 84.2 94.7
C2' C3' C4' C5' 207.2 217.2
O4' C4' C5' C3' 241.6 244.6
O4' C4' C5' H4' 121.8 122.2
C3' C4' C5' H4' 240.2 237.6
C5' C4' C3' O3' 86.3 98.6
C5' C4' C3' H3' 323.8 335.9
O5' C5' C4' H5'1 240.6 240.0
O5' C5' C4' H5'2 119.5 120.0
C4' C5' O5' P 181.3 179.9
H5'1 C5' C4' H5'2 238.9 240.0
C4' C3' C2' H1 151.6 118.7
C2' C3' C4' O3' 120.9 118.7
C2' C3' C4' H3' 243.4 241.4
O4' C4' C3' C5' 120.4 118.8
O4' C4' C3' H4' 241.0 241.1
C5' C4' C3' H4' 120.6 122.3
C3' C4' C5' O5' 188.7 181.8
C3' C4' C5' H5'1 308.2 301.8
C3' C4' C5' H5'2 69.3 61.8
O3' C3' C4' H3' 122.5 122.7
C4' C3' O3' H2 287.5 176.1
O4' C4' H4' C5' 238.3 237.8
O4' C4' H4' C3' 116.6 115.4
C5' C4' H4' C3' 238.3 237.6
H4' C4' C5' O5' 308.5 304.3
H4' C4' C5' H5'1 67.9 64.2
H4' C4' C5' H5'2 189.0 184.2
H4' C4' C3' O3' 325.7 336.2
H4' C4' C3' H3' 203.2 213.5
O5' C5' C4' C3' 188.7 181.8
O5' C5' C4' H4' 308.5 304.3
C4' C5' O5' H5'1 119.4 120.0
C4' C5' O5' H5'2 240.5 240.0
H5'1 C5' O5' H5'2 121.1 120.0
C5' O5' P O1P 294.0 55.0
C5' O5' P O2P 174.9 295.1
C5' O5' P O3P 53.9 175.0
H5'1 C5' C4' C3' 308.2 301.8
H5'1 C5' C4' H4' 67.9 64.2
C4' C5' H5'1 O5' 243.3 240.0
C4' C5' H5'1 H5'2 121.6 120.0
O5' C5' H5'1 H5'2 238.3 240.0
H5'1 C5' O5' P 61.8 59.9
H5'2 C5' C4' C3' 69.3 61.8
H5'2 C5' C4' H4' 189.0 184.2
C4' C5' H5'2 O5' 116.7 120.0
C4' C5' H5'2 H5'1 238.4 240.0
O5' C5' H5'2 H5'1 121.6 120.0
H5'2 C5' O5' P 300.7 300.0
P O5' C5' H5'1 61.8 59.9
P O5' C5' H5'2 300.7 300.0
O1P P O5' O2P 119.1 120.0
O1P P O5' O3P 240.1 240.0
O2P P O5' O3P 121.0 120.0
O5' P O2P H2P 111.7 300.0
O5' P O3P C1P 69.6 185.1
O5' P O1P O2P 246.6 240.0
O5' P O1P O3P 114.9 120.0
O2P P O1P O3P 228.3 240.0
O1P P O2P H2P 0.0 180.0
O1P P O3P C1P 182.1 305.1
O5' P O2P O1P 111.7 120.0
O5' P O2P O3P 243.6 240.0
O1P P O2P O3P 131.9 120.0
O2P P O3P C1P 313.9 65.1
O5' P O3P O1P 247.5 240.0
O5' P O3P O2P 115.7 120.0
O1P P O3P O2P 228.2 240.0
O3P P O2P H2P 228.1 60.0
P O3P C1P C2P 188.0 180.0
P O3P C1P H1P1 309.0 299.9
P O3P C1P H1P2 67.0 59.9
H2P O2P P O3P 228.1 60.0
C2P C1P O3P H1P1 239.0 240.0
C2P C1P O3P H1P2 121.0 120.0
O3P C1P C2P C3P 62.7 179.9
O3P C1P C2P H2P1 182.9 300.0
O3P C1P C2P H2P2 302.4 60.0
H1P1 C1P O3P H1P2 241.9 240.0
O3P C1P C2P H1P1 121.0 119.9
O3P C1P C2P H1P2 239.0 240.0
H1P1 C1P C2P H1P2 118.0 120.0
C3P C2P C1P H2P1 239.8 240.0
C3P C2P C1P H2P2 120.3 119.9
C1P C2P C3P H3P1 180.0 60.0
C1P C2P C3P H3P2 300.0 180.0
C1P C2P C3P H3P3 60.0 300.0
H2P1 C2P C1P H2P2 240.5 240.0
O3P C1P H1P1 C2P 233.9 240.0
O3P C1P H1P1 H1P2 117.0 120.0
C2P C1P H1P1 H1P2 243.1 240.0
H1P1 C1P C2P C3P 301.7 60.0
H1P1 C1P C2P H2P1 61.9 180.0
H1P1 C1P C2P H2P2 181.5 300.0
O3P C1P H1P2 C2P 126.1 120.0
O3P C1P H1P2 H1P1 243.0 240.0
C2P C1P H1P2 H1P1 116.9 120.0
H1P2 C1P C2P C3P 183.7 300.0
H1P2 C1P C2P H2P1 303.9 60.0
H1P2 C1P C2P H2P2 63.4 180.0
C3P C2P C1P H1P1 301.7 60.0
C3P C2P C1P H1P2 183.7 300.0
C1P C2P C3P H2P1 120.2 120.0
C1P C2P C3P H2P2 239.7 240.1
H2P1 C2P C3P H2P2 119.5 120.1
H3P1 C3P C2P H3P2 240.0 240.0
H3P1 C3P C2P H3P3 120.0 120.0
H3P2 C3P C2P H3P3 240.0 239.9
H2P1 C2P C1P H1P1 61.9 180.0
H2P1 C2P C1P H1P2 303.9 60.0
C1P C2P H2P1 C3P 238.5 240.0
C1P C2P H2P1 H2P2 119.3 120.0
C3P C2P H2P1 H2P2 240.7 240.0
H2P1 C2P C3P H3P1 59.8 300.0
H2P1 C2P C3P H3P2 179.8 60.0
H2P1 C2P C3P H3P3 299.7 180.1
H2P2 C2P C1P H1P1 181.5 300.0
H2P2 C2P C1P H1P2 63.4 180.0
C1P C2P H2P2 C3P 121.5 120.0
C1P C2P H2P2 H2P1 240.7 240.0
C3P C2P H2P2 H2P1 119.2 120.1
H2P2 C2P C3P H3P1 300.3 180.0
H2P2 C2P C3P H3P2 60.3 299.9
H2P2 C2P C3P H3P3 180.2 60.0
H3P1 C3P C2P H2P1 59.8 300.0
H3P1 C3P C2P H2P2 300.3 180.0
C2P C3P H3P1 H3P2 120.0 120.0
C2P C3P H3P1 H3P3 240.0 239.9
H3P2 C3P H3P1 H3P3 120.0 119.9
H3P2 C3P C2P H2P1 179.8 60.0
H3P2 C3P C2P H2P2 60.3 299.9
C2P C3P H3P2 H3P1 240.0 240.0
C2P C3P H3P2 H3P3 120.0 120.1
H3P1 C3P H3P2 H3P3 240.0 240.1
H3P3 C3P C2P H2P1 299.7 180.1
H3P3 C3P C2P H2P2 180.2 60.0
C2P C3P H3P3 H3P1 120.0 120.0
C2P C3P H3P3 H3P2 240.0 239.9
H3P1 C3P H3P3 H3P2 120.0 119.9
O3' C3' C2' H1 263.6 237.4
C2' C3' O3' C4' 252.5 245.3
C2' C3' O3' H3' 131.4 122.7
O3' C3' C4' H4' 325.7 336.2
C4' C3' O3' H3' 238.9 237.3
H3' C3' C2' H1 35.6 0.1
C2' C3' H3' C4' 107.8 114.6
C2' C3' H3' O3' 226.0 237.3
H3' C3' C4' H4' 203.2 213.5
C4' C3' H3' O3' 118.2 122.7
H3' C3' O3' H2 48.7 298.8
H2 O3' C3' H3' 48.7 298.8
C8 N9 C1' H1' 132.1 142.7
C1' N9 C8 C4 180.2 179.8
C8 N9 C4 C5 359.9 359.6
C8 N9 C4 N3 179.8 179.7
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 360.0 0.0
C4 N9 C1' H1' 312.3 322.4
C1' N9 C4 C8 179.8 180.2
C4 N9 C8 N7 0.1 0.2
C4 N9 C8 H8 180.1 180.2
N7 C5 C4 N9 0.1 0.4
N9 C4 C5 C6 180.4 180.1
C5 C4 N9 N3 180.0 179.9
N9 C4 N3 C2 179.8 180.0
N7 C8 N9 C4 0.1 0.2
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C4 359.9 359.7
C8 N7 C5 C6 179.7 180.0
H8 C8 N9 C4 180.1 180.2
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 180.0 180.1
N9 C4 C5 N7 0.1 0.4
C5 N7 C8 H8 180.0 180.1
C4 C5 N7 C6 180.3 179.7
N7 C5 C4 N3 180.1 180.3
N7 C5 C6 N1 180.0 179.2
N7 C5 C6 N6 0.1 359.9
N9 C4 C5 N3 180.0 180.1
N7 C5 C4 C6 179.8 180.3
C4 C5 C6 N1 359.7 359.5
C4 C5 C6 N6 179.8 180.3
C5 C4 N3 C2 359.8 0.1
N7 C5 C6 C4 180.3 179.7
C6 C5 C4 N3 0.4 0.1
C2 N1 C6 C5 0.1 0.7
N1 C6 C5 N6 179.9 179.3
C5 C6 N6 HN61 179.9 0.0
C5 C6 N6 HN62 299.8 179.9
N9 C4 N3 C5 180.0 179.9
N3 C4 C5 C6 0.4 0.1
C4 N3 C2 N1 359.9 0.1
C4 N3 C2 H3 179.9 180.0
N1 C2 N3 H3 180.0 180.1
N3 C2 N1 C6 0.1 359.5
C5 C6 N1 C2 0.1 0.7
N3 C2 N1 H3 180.0 179.9
C2 N1 C6 N6 180.0 179.9
N3 C2 H3 N1 180.0 180.1
H3 C2 N1 C6 180.1 179.6
C5 C6 N1 N6 180.1 180.7
C6 N1 C2 H3 180.1 179.6
N1 C6 N6 HN61 360.0 180.8
N1 C6 N6 HN62 120.0 0.7
C5 C6 N6 N1 179.9 179.3
HN61 N6 C6 HN62 240.0 180.1
C6 N6 HN61 HN62 120.0 179.9
C6 N6 HN62 HN61 240.0 180.1