PDB Chemical Component PRP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PRP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.509	1.544
C1	O1	1.464	1.428
C1	O4	1.376	1.443
C1	H1	1.116	1.090
C2	C3	1.501	1.544
C2	O2	1.438	1.429
C2	H2	1.115	1.090
C3	C4	1.486	1.545
C3	O3	1.416	1.429
C3	H3	1.115	1.090
C4	C5	1.516	1.530
C4	O4	1.447	1.446
C4	H4	1.114	1.090
C5	O5	1.406	1.428
C5	H51	1.115	1.090
C5	H52	1.116	1.088
O1	PA	1.640	1.610
O2	HO2	0.950	0.966
O3	HO3	0.949	0.966
O5	P	1.613	1.610
P	O1P	1.477	1.480
P	O2P	1.490	1.610
P	O3P	1.497	1.610
O2P	HOP2	0.949	0.966
O3P	HOP3	0.949	0.966
PA	O1A	1.505	1.480
PA	O2A	1.477	1.610
PA	O3A	1.516	1.609
O2A	HOA2	0.950	0.967
O3A	PB	1.521	1.610
PB	O1B	1.442	1.479
PB	O2B	1.452	1.609
PB	O3B	1.479	1.610
O2B	HOB2	0.950	0.967
O3B	HOB3	0.950	0.966

Bond Angles for PRP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	113.6	110.4
C2	C1	O4	105.8	104.8
C2	C1	H1	108.4	110.3
C1	C2	C3	101.0	104.1
C1	C2	O2	112.6	110.6
C1	C2	H2	112.4	110.5
O1	C1	O4	106.7	110.5
O1	C1	H1	107.5	110.3
C1	O1	PA	127.5	106.8
O4	C1	H1	115.1	110.3
C1	O4	C4	108.6	105.4
C3	C2	O2	107.7	110.5
C3	C2	H2	117.0	110.5
C2	C3	C4	102.5	104.2
C2	C3	O3	114.9	110.5
C2	C3	H3	109.4	110.5
O2	C2	H2	106.2	110.4
C2	O2	HO2	112.6	106.9
C4	C3	O3	105.5	110.5
C4	C3	H3	118.2	110.5
C3	C4	C5	105.3	110.7
C3	C4	O4	106.9	104.7
C3	C4	H4	114.3	110.3
O3	C3	H3	106.6	110.4
C3	O3	HO3	114.9	106.8
C5	C4	O4	111.0	110.4
C5	C4	H4	110.5	110.4
C4	C5	O5	110.5	109.5
C4	C5	H51	111.9	109.4
C4	C5	H52	111.8	109.5
O4	C4	H4	108.9	110.3
O5	C5	H51	111.9	109.4
O5	C5	H52	111.9	109.5
C5	O5	P	123.6	106.8
H51	C5	H52	98.5	109.5
O1	PA	O1A	102.4	109.5
O1	PA	O2A	107.8	109.5
O1	PA	O3A	102.0	109.5
O5	P	O1P	107.8	109.5
O5	P	O2P	109.6	109.5
O5	P	O3P	96.5	109.5
O1P	P	O2P	111.6	109.5
O1P	P	O3P	116.0	109.4
O2P	P	O3P	114.0	109.5
P	O2P	HOP2	109.5	106.8
P	O3P	HOP3	96.5	106.8
O1A	PA	O2A	114.1	109.5
O1A	PA	O3A	114.4	109.5
O2A	PA	O3A	114.4	109.4
PA	O2A	HOA2	107.8	106.8
PA	O3A	PB	129.6	106.8
O3A	PB	O1B	111.6	109.4
O3A	PB	O2B	109.8	109.5
O3A	PB	O3B	112.7	109.5
O1B	PB	O2B	109.0	109.5
O1B	PB	O3B	108.8	109.5
O2B	PB	O3B	104.7	109.5
PB	O2B	HOB2	109.8	106.8
PB	O3B	HOB3	112.7	106.9

Torsion Angles for PRP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O4	243.3	241.0
O1	C1	C2	H1	119.4	122.2
C2	C1	O1	PA	208.0	210.0
O4	C1	C2	H1	236.1	241.2
C2	C1	O4	C4	335.0	319.6
C3	C2	C1	O2	245.3	241.3
C3	C2	C1	H2	125.4	118.6
C1	C2	C3	C4	324.6	359.9
C1	C2	C3	O3	78.4	118.6
C1	C2	C3	H3	198.3	241.2
O2	C2	C1	H2	240.1	237.4
C1	C2	O2	HO2	179.9	65.3
C2	C1	O1	O4	116.1	115.5
C2	C1	O1	H1	240.1	237.8
O1	C1	C2	C3	281.3	265.0
O1	C1	C2	O2	36.0	23.7
O1	C1	C2	H2	155.9	146.4
O4	C1	O1	H1	124.0	122.3
O1	C1	O4	C4	96.3	78.5
C1	O1	PA	O1A	265.2	300.0
C1	O1	PA	O2A	25.8	60.0
C1	O1	PA	O3A	146.6	179.9
C2	C1	O4	O1	238.8	241.1
C2	C1	O4	H1	119.6	118.8
O4	C1	C2	C3	38.0	24.0
O4	C1	C2	O2	152.7	142.7
O4	C1	C2	H2	272.6	265.4
O1	C1	O4	H1	240.9	237.8
O4	C1	O1	PA	91.9	94.5
C3	C4	O4	C1	1.6	40.3
C5	C4	O4	C1	115.9	159.5
C1	O4	C4	H4	237.7	281.7
C2	C1	H1	O1	123.1	122.3
C2	C1	H1	O4	241.8	244.6
H1	C1	C2	C3	162.0	142.8
H1	C1	C2	O2	276.6	261.5
H1	C1	C2	H2	36.5	24.2
O1	C1	H1	O4	118.7	122.4
H1	C1	O1	PA	327.9	332.3
H1	C1	O4	C4	215.4	200.8
C3	C2	C1	O1	281.3	265.0
C3	C2	C1	O4	38.0	24.0
C3	C2	C1	H1	162.0	142.8
C1	C2	C3	O2	118.2	118.8
C1	C2	C3	H2	237.7	241.3
O2	C2	C3	H2	119.4	122.6
C3	C2	O2	HO2	290.4	180.0
C4	C3	C2	O3	246.1	241.3
C4	C3	C2	H3	126.3	118.7
C2	C3	C4	C5	264.1	217.3
C2	C3	C4	O4	22.2	336.2
C2	C3	C4	H4	142.7	94.9
O3	C3	C2	H3	240.2	237.4
C2	C3	O3	HO3	180.0	63.4
O2	C2	C1	O1	36.0	23.7
O2	C2	C1	O4	152.7	142.7
O2	C2	C1	H1	276.6	261.5
C1	C2	O2	C3	249.5	245.3
C1	C2	O2	H2	123.4	122.7
C3	C2	O2	H2	233.9	237.4
O2	C2	C3	C4	206.3	241.1
O2	C2	C3	O3	320.2	359.9
O2	C2	C3	H3	80.0	122.4
H2	C2	C1	O1	155.9	146.4
H2	C2	C1	O4	272.6	265.4
H2	C2	C1	H1	36.5	24.2
C1	C2	H2	C3	116.2	114.6
C1	C2	H2	O2	236.5	237.2
C3	C2	H2	O2	120.3	122.6
H2	C2	C3	C4	86.9	118.5
H2	C2	C3	O3	200.8	237.3
H2	C2	C3	H3	320.6	359.9
H2	C2	O2	HO2	56.5	302.6
C1	O4	C4	C3	1.6	40.3
C4	C3	C2	O2	206.3	241.1
C4	C3	C2	H2	86.9	118.5
C2	C3	C4	O3	120.6	118.7
C2	C3	C4	H3	239.7	241.3
O3	C3	C4	H3	119.1	122.5
C4	C3	O3	HO3	292.1	178.2
C5	C4	C3	O4	241.9	241.0
C5	C4	C3	H4	121.4	122.4
C3	C4	C5	O5	170.8	176.9
C3	C4	C5	H51	296.2	296.8
C3	C4	C5	H52	45.6	56.9
O4	C4	C3	H4	239.5	241.4
O3	C3	C2	O2	320.2	359.9
O3	C3	C2	H2	200.8	237.3
C2	C3	O3	C4	247.9	245.2
C2	C3	O3	H3	121.3	122.6
C4	C3	O3	H3	233.5	237.4
O3	C3	C4	C5	143.5	98.6
O3	C3	C4	O4	261.6	217.5
O3	C3	C4	H4	22.1	336.1
H3	C3	C2	O2	80.0	122.4
H3	C3	C2	H2	320.6	359.9
C2	C3	H3	C4	116.7	114.8
C2	C3	H3	O3	235.2	237.4
C4	C3	H3	O3	118.5	122.6
H3	C3	C4	C5	24.4	336.0
H3	C3	C4	O4	142.5	95.0
H3	C3	C4	H4	263.0	213.6
H3	C3	O3	HO3	58.7	300.7
C1	O4	C4	C5	115.9	159.5
C5	C4	C3	O3	143.5	98.6
C5	C4	C3	H3	24.4	336.0
C3	C4	C5	O4	115.3	115.5
C3	C4	C5	H4	236.2	237.6
O4	C4	C5	H4	120.8	122.2
O5	C5	C4	H51	234.7	240.1
O5	C5	C4	H52	125.3	120.1
C4	C5	O5	P	106.7	180.0
H51	C5	C4	H52	250.6	240.0
C4	O4	C1	H1	215.4	200.8
O4	C4	C3	O3	261.6	217.5
O4	C4	C3	H3	142.5	95.0
C3	C4	O4	C5	245.7	240.8
C3	C4	O4	H4	123.9	118.6
C5	C4	O4	H4	238.2	237.8
O4	C4	C5	O5	55.5	61.5
O4	C4	C5	H51	180.8	181.4
O4	C4	C5	H52	290.2	301.4
H4	C4	C3	O3	22.1	336.1
H4	C4	C3	H3	263.0	213.6
C3	C4	H4	C5	118.5	122.6
C3	C4	H4	O4	240.5	244.9
C5	C4	H4	O4	122.1	122.2
H4	C4	C5	O5	294.7	299.3
H4	C4	C5	H51	60.0	59.2
H4	C4	C5	H52	169.4	179.2
O5	C5	C4	O4	55.5	61.5
O5	C5	C4	H4	294.7	299.3
C4	C5	O5	H51	125.3	119.9
C4	C5	O5	H52	234.7	240.0
H51	C5	O5	H52	109.4	120.0
C5	O5	P	O1P	44.1	59.9
C5	O5	P	O2P	282.4	180.0
C5	O5	P	O3P	164.1	300.0
H51	C5	C4	O4	180.8	181.4
H51	C5	C4	H4	60.0	59.2
C4	C5	H51	O5	235.5	240.0
C4	C5	H51	H52	117.7	120.0
O5	C5	H51	H52	242.3	240.0
H51	C5	O5	P	341.4	60.0
H52	C5	C4	O4	290.2	301.4
H52	C5	C4	H4	169.4	179.2
C4	C5	H52	O5	124.5	120.0
C4	C5	H52	H51	242.3	240.0
O5	C5	H52	H51	117.7	120.0
H52	C5	O5	P	231.9	300.0
PA	O1	C1	O4	91.9	94.5
PA	O1	C1	H1	327.9	332.3
O1A	PA	O1	O2A	239.4	240.0
O1A	PA	O1	O3A	118.6	120.1
O2A	PA	O1	O3A	239.2	240.1
O1	PA	O2A	HOA2	180.0	60.0
O1	PA	O3A	PB	290.8	180.0
HO2	O2	C2	H2	56.5	302.6
HO3	O3	C3	H3	58.7	300.7
P	O5	C5	H51	341.4	60.0
P	O5	C5	H52	231.9	300.0
O1P	P	O5	O2P	121.7	240.0
O1P	P	O5	O3P	240.0	119.9
O2P	P	O5	O3P	118.3	240.0
O5	P	O2P	HOP2	180.0	180.0
O5	P	O3P	HOP3	180.0	300.0
O5	P	O1P	O2P	239.6	120.1
O5	P	O1P	O3P	106.8	240.0
O2P	P	O1P	O3P	227.2	120.0
O1P	P	O2P	HOP2	60.7	300.0
O1P	P	O3P	HOP3	293.5	180.0
O5	P	O2P	O1P	119.3	240.0
O5	P	O2P	O3P	253.2	120.0
O1P	P	O2P	O3P	133.9	240.1
O2P	P	O3P	HOP3	65.2	60.0
O5	P	O3P	O1P	246.5	120.0
O5	P	O3P	O2P	114.8	239.9
O1P	P	O3P	O2P	228.3	120.0
O3P	P	O2P	HOP2	286.8	60.0
HOP2	O2P	P	O3P	286.8	60.0
O1	PA	O1A	O2A	116.2	120.0
O1	PA	O1A	O3A	250.5	239.9
O2A	PA	O1A	O3A	134.3	120.0
O1A	PA	O2A	HOA2	293.0	180.0
O1A	PA	O3A	PB	181.1	59.9
O1	PA	O2A	O1A	247.0	240.0
O1	PA	O2A	O3A	112.7	120.0
O1A	PA	O2A	O3A	225.7	239.9
O2A	PA	O3A	PB	46.9	299.9
O1	PA	O3A	O1A	109.7	120.0
O1	PA	O3A	O2A	243.9	240.0
O1A	PA	O3A	O2A	134.2	120.0
O3A	PA	O2A	HOA2	67.3	300.0
PA	O3A	PB	O1B	326.0	60.1
PA	O3A	PB	O2B	205.1	180.1
PA	O3A	PB	O3B	88.8	300.1
HOA2	O2A	PA	O3A	67.3	300.0
O1B	PB	O3A	O2B	120.9	240.0
O1B	PB	O3A	O3B	237.2	120.0
O2B	PB	O3A	O3B	116.3	240.0
O3A	PB	O2B	HOB2	180.0	180.0
O3A	PB	O3B	HOB3	180.0	300.0
O3A	PB	O1B	O2B	238.6	120.0
O3A	PB	O1B	O3B	125.0	240.0
O2B	PB	O1B	O3B	246.4	120.0
O1B	PB	O2B	HOB2	57.5	300.0
O1B	PB	O3B	HOB3	304.3	180.1
O3A	PB	O2B	O1B	122.5	240.1
O3A	PB	O2B	O3B	238.7	120.0
O1B	PB	O2B	O3B	116.3	239.9
O2B	PB	O3B	HOB3	60.7	60.0
O3A	PB	O3B	O1B	235.7	120.0
O3A	PB	O3B	O2B	119.3	240.0
O1B	PB	O3B	O2B	243.6	120.0
O3B	PB	O2B	HOB2	301.2	60.0
HOB2	O2B	PB	O3B	301.2	60.0