PDB Chemical Component PRN

Ideal Model

Chemical Description

Name PURINE 2'-DEOXYRIBO-5'-MONOPHOSPHATE
Formula C10 H13 N4 O6 P
Formal charge 0
Molecular weight 316.207 g/mol
Component type DNA LINKING
Nonstandard Parent Id DA

Chemical features

Atom count 34
Chiral atom count 3
Chiral atoms C1' C3' C4'
Observed leaving atoms OP3 HO3'
Bond count 36
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purine
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-purin-9-yl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3cncnc23
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2cnc3cncnc23
Stereo SMILES (OpenEye) c1c2c(ncn1)n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O
InChI descriptor InChI=1S/C10H13N4O6P/c15-7-1-9(20-8(7)3-19-21(16,17)18)14-5-13-6-2-11-4-12-10(6)14/h2,4-5,7-9,15H,1,3H2,(H2,16,17,18)/t7-,8+,9+/m0/s1
InChIKey descriptor OQIJGDJDESHELC-DJLDLDEBSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Model PDB code 1CL8
Processing site RCSB