PDB Chemical Component PRN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PRN
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.349 |
1.319 |
| N1 |
C6 |
1.331 |
1.322 |
| C2 |
N3 |
1.324 |
1.317 |
| C2 |
H2 |
1.103 |
1.081 |
| N3 |
C4 |
1.335 |
1.325 |
| C4 |
C5 |
1.397 |
1.409 |
| C4 |
N9 |
1.370 |
1.372 |
| C5 |
C6 |
1.386 |
1.395 |
| C5 |
N7 |
1.375 |
1.356 |
| C6 |
H6 |
1.102 |
1.080 |
| N7 |
C8 |
1.336 |
1.302 |
| C8 |
N9 |
1.313 |
1.362 |
| C8 |
H8 |
1.103 |
1.080 |
| N9 |
C1' |
1.462 |
1.464 |
| C1' |
C2' |
1.512 |
1.545 |
| C1' |
O4' |
1.410 |
1.443 |
| C1' |
H1' |
1.115 |
1.089 |
| C2' |
C3' |
1.522 |
1.545 |
| C2' |
H2' |
1.114 |
1.089 |
| C2' |
H2'' |
1.114 |
1.090 |
| C3' |
O3' |
1.430 |
1.429 |
| C3' |
C4' |
1.533 |
1.544 |
| C3' |
H3' |
1.115 |
1.090 |
| O3' |
HO3' |
0.950 |
0.967 |
| C4' |
O4' |
1.445 |
1.446 |
| C4' |
C5' |
1.511 |
1.529 |
| C4' |
H4' |
1.116 |
1.090 |
| C5' |
O5' |
1.426 |
1.427 |
| C5' |
H5' |
1.115 |
1.090 |
| C5' |
H5'' |
1.115 |
1.090 |
| O5' |
P |
1.594 |
1.610 |
| P |
OP1 |
1.485 |
1.480 |
| P |
OP2 |
1.485 |
1.610 |
| P |
OP3 |
1.604 |
1.608 |
| OP2 |
HOP2 |
0.949 |
0.967 |
| OP3 |
HOP3 |
0.949 |
0.967 |
Bond Angles for PRN
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
117.6 |
121.3 |
| N1 |
C2 |
N3 |
128.5 |
122.4 |
| N1 |
C2 |
H2 |
116.9 |
118.8 |
| N1 |
C6 |
C5 |
119.0 |
118.6 |
| N1 |
C6 |
H6 |
118.5 |
120.7 |
| N3 |
C2 |
H2 |
114.6 |
118.8 |
| C2 |
N3 |
C4 |
113.3 |
120.4 |
| N3 |
C4 |
C5 |
123.3 |
119.0 |
| N3 |
C4 |
N9 |
127.2 |
135.0 |
| C5 |
C4 |
N9 |
109.6 |
106.0 |
| C4 |
C5 |
C6 |
118.5 |
118.2 |
| C4 |
C5 |
N7 |
105.5 |
107.0 |
| C4 |
N9 |
C8 |
104.6 |
107.5 |
| C4 |
N9 |
C1' |
126.0 |
126.3 |
| C6 |
C5 |
N7 |
136.1 |
134.7 |
| C5 |
C6 |
H6 |
122.5 |
120.7 |
| C5 |
N7 |
C8 |
106.3 |
109.4 |
| N7 |
C8 |
N9 |
114.1 |
110.1 |
| N7 |
C8 |
H8 |
123.7 |
124.9 |
| N9 |
C8 |
H8 |
122.2 |
125.0 |
| C8 |
N9 |
C1' |
129.4 |
126.2 |
| N9 |
C1' |
C2' |
116.3 |
110.4 |
| N9 |
C1' |
O4' |
108.2 |
110.5 |
| N9 |
C1' |
H1' |
104.1 |
110.3 |
| C2' |
C1' |
O4' |
103.9 |
104.8 |
| C2' |
C1' |
H1' |
108.4 |
110.4 |
| C1' |
C2' |
C3' |
100.6 |
104.0 |
| C1' |
C2' |
H2' |
115.6 |
110.5 |
| C1' |
C2' |
H2'' |
115.6 |
110.5 |
| O4' |
C1' |
H1' |
116.4 |
110.4 |
| C1' |
O4' |
C4' |
106.8 |
105.4 |
| C3' |
C2' |
H2' |
115.6 |
110.5 |
| C3' |
C2' |
H2'' |
115.6 |
110.5 |
| C2' |
C3' |
O3' |
108.2 |
110.5 |
| C2' |
C3' |
C4' |
103.3 |
104.2 |
| C2' |
C3' |
H3' |
114.1 |
110.5 |
| H2' |
C2' |
H2'' |
94.8 |
110.6 |
| O3' |
C3' |
C4' |
109.0 |
110.5 |
| O3' |
C3' |
H3' |
108.8 |
110.5 |
| C3' |
O3' |
HO3' |
108.2 |
106.8 |
| C4' |
C3' |
H3' |
113.2 |
110.5 |
| C3' |
C4' |
O4' |
106.3 |
104.7 |
| C3' |
C4' |
C5' |
115.9 |
110.7 |
| C3' |
C4' |
H4' |
107.9 |
110.3 |
| O4' |
C4' |
C5' |
111.4 |
110.4 |
| O4' |
C4' |
H4' |
112.8 |
110.4 |
| C5' |
C4' |
H4' |
102.6 |
110.3 |
| C4' |
C5' |
O5' |
110.8 |
109.5 |
| C4' |
C5' |
H5' |
111.7 |
109.5 |
| C4' |
C5' |
H5'' |
111.7 |
109.5 |
| O5' |
C5' |
H5' |
111.8 |
109.5 |
| O5' |
C5' |
H5'' |
111.8 |
109.4 |
| C5' |
O5' |
P |
120.4 |
106.9 |
| H5' |
C5' |
H5'' |
98.6 |
109.4 |
| O5' |
P |
OP1 |
108.6 |
109.4 |
| O5' |
P |
OP2 |
108.7 |
109.5 |
| O5' |
P |
OP3 |
103.7 |
109.5 |
| OP1 |
P |
OP2 |
119.6 |
109.4 |
| OP1 |
P |
OP3 |
107.8 |
109.5 |
| OP2 |
P |
OP3 |
107.2 |
109.5 |
| P |
OP2 |
HOP2 |
108.8 |
106.8 |
| P |
OP3 |
HOP3 |
103.7 |
106.8 |
Torsion Angles for PRN
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
C5 |
359.9 |
0.0 |
| C2 |
N1 |
C6 |
H6 |
179.9 |
180.0 |
| N3 |
C2 |
N1 |
H2 |
180.0 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
0.0 |
359.7 |
| C6 |
N1 |
C2 |
N3 |
0.0 |
360.0 |
| C6 |
N1 |
C2 |
H2 |
180.0 |
179.9 |
| C4 |
C5 |
C6 |
N1 |
0.2 |
0.2 |
| N1 |
C6 |
C5 |
N7 |
180.1 |
180.0 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
180.0 |
| N3 |
C2 |
N1 |
C6 |
0.0 |
360.0 |
| N1 |
C2 |
N3 |
H2 |
180.0 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
0.1 |
0.5 |
| C2 |
N3 |
C4 |
N9 |
180.1 |
179.5 |
| H2 |
C2 |
N1 |
C6 |
180.0 |
179.9 |
| N1 |
C2 |
H2 |
N3 |
180.0 |
180.0 |
| H2 |
C2 |
N3 |
C4 |
180.0 |
179.8 |
| C4 |
N3 |
C2 |
H2 |
180.0 |
179.8 |
| C5 |
C4 |
N3 |
N9 |
180.0 |
181.0 |
| N3 |
C4 |
C5 |
C6 |
359.8 |
359.5 |
| N3 |
C4 |
C5 |
N7 |
179.9 |
179.7 |
| N3 |
C4 |
N9 |
C8 |
180.1 |
180.5 |
| N3 |
C4 |
N9 |
C1' |
0.3 |
0.8 |
| N1 |
C6 |
C5 |
C4 |
0.2 |
0.2 |
| N3 |
C4 |
C5 |
N9 |
180.0 |
179.2 |
| C5 |
C4 |
N9 |
C8 |
0.1 |
359.6 |
| C5 |
C4 |
N9 |
C1' |
180.3 |
179.9 |
| C6 |
C5 |
C4 |
N7 |
179.9 |
179.8 |
| C4 |
C5 |
C6 |
H6 |
180.2 |
180.3 |
| C4 |
C5 |
N7 |
C8 |
0.1 |
359.8 |
| N3 |
C4 |
N9 |
C5 |
180.0 |
180.9 |
| N9 |
C4 |
C5 |
C6 |
179.8 |
180.2 |
| N9 |
C4 |
C5 |
N7 |
359.9 |
0.4 |
| N7 |
C8 |
N9 |
C4 |
360.0 |
0.3 |
| C4 |
N9 |
C8 |
H8 |
180.0 |
180.2 |
| C8 |
N9 |
C4 |
C1' |
179.8 |
179.7 |
| C4 |
N9 |
C1' |
C2' |
153.7 |
89.6 |
| C4 |
N9 |
C1' |
O4' |
270.2 |
205.1 |
| C4 |
N9 |
C1' |
H1' |
34.6 |
327.4 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
N9 |
179.8 |
180.2 |
| C4 |
C5 |
C6 |
N7 |
180.1 |
180.2 |
| C6 |
C5 |
N7 |
C8 |
180.2 |
180.0 |
| N7 |
C5 |
C4 |
N9 |
359.9 |
0.4 |
| C4 |
C5 |
N7 |
C6 |
179.9 |
179.8 |
| N7 |
C5 |
C6 |
H6 |
0.1 |
0.0 |
| C5 |
N7 |
C8 |
N9 |
359.9 |
360.0 |
| C5 |
N7 |
C8 |
H8 |
179.9 |
180.0 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
N7 |
0.1 |
0.0 |
| C4 |
N9 |
C8 |
N7 |
360.0 |
0.3 |
| N9 |
C8 |
N7 |
H8 |
180.0 |
179.9 |
| N7 |
C8 |
N9 |
C1' |
179.7 |
180.0 |
| C4 |
N9 |
C8 |
C1' |
180.2 |
180.3 |
| N7 |
C8 |
N9 |
H8 |
180.0 |
180.1 |
| C8 |
N9 |
C1' |
C2' |
334.0 |
270.0 |
| C8 |
N9 |
C1' |
O4' |
90.4 |
25.5 |
| C8 |
N9 |
C1' |
H1' |
214.9 |
147.8 |
| N7 |
C8 |
H8 |
N9 |
180.0 |
179.9 |
| H8 |
C8 |
N9 |
C1' |
359.7 |
359.9 |
| C4 |
N9 |
C1' |
C8 |
179.7 |
179.6 |
| C1' |
N9 |
C8 |
H8 |
359.7 |
359.9 |
| C2' |
C1' |
N9 |
O4' |
243.6 |
244.6 |
| C2' |
C1' |
N9 |
H1' |
119.1 |
122.2 |
| N9 |
C1' |
C2' |
C3' |
162.4 |
142.9 |
| N9 |
C1' |
C2' |
H2' |
287.7 |
24.3 |
| N9 |
C1' |
C2' |
H2'' |
37.1 |
261.6 |
| O4' |
C1' |
N9 |
H1' |
235.6 |
237.7 |
| N9 |
C1' |
O4' |
C4' |
196.2 |
200.6 |
| N9 |
C1' |
C2' |
O4' |
118.8 |
119.0 |
| N9 |
C1' |
C2' |
H1' |
243.2 |
237.8 |
| O4' |
C1' |
C2' |
H1' |
124.4 |
118.8 |
| C2' |
C1' |
O4' |
C4' |
320.4 |
319.5 |
| C3' |
C2' |
C1' |
H2' |
234.7 |
118.6 |
| C3' |
C2' |
C1' |
H2'' |
125.3 |
241.4 |
| C1' |
C2' |
C3' |
O3' |
84.8 |
118.7 |
| C1' |
C2' |
C3' |
C4' |
329.3 |
360.0 |
| C1' |
C2' |
C3' |
H3' |
206.0 |
241.2 |
| H2' |
C2' |
C1' |
H2'' |
250.6 |
122.8 |
| N9 |
C1' |
O4' |
C2' |
235.8 |
241.1 |
| N9 |
C1' |
O4' |
H1' |
116.7 |
122.3 |
| C2' |
C1' |
O4' |
H1' |
241.0 |
241.2 |
| O4' |
C1' |
C2' |
C3' |
43.6 |
24.0 |
| O4' |
C1' |
C2' |
H2' |
168.9 |
265.4 |
| O4' |
C1' |
C2' |
H2'' |
278.3 |
142.6 |
| C3' |
C4' |
O4' |
C1' |
19.0 |
40.4 |
| C1' |
O4' |
C4' |
C5' |
146.1 |
159.5 |
| C1' |
O4' |
C4' |
H4' |
260.9 |
281.7 |
| N9 |
C1' |
H1' |
C2' |
124.4 |
122.2 |
| N9 |
C1' |
H1' |
O4' |
241.0 |
237.6 |
| C2' |
C1' |
H1' |
O4' |
116.6 |
115.4 |
| H1' |
C1' |
C2' |
C3' |
279.2 |
265.1 |
| H1' |
C1' |
C2' |
H2' |
44.5 |
146.5 |
| H1' |
C1' |
C2' |
H2'' |
153.9 |
23.8 |
| H1' |
C1' |
O4' |
C4' |
79.4 |
78.4 |
| C3' |
C2' |
C1' |
O4' |
43.6 |
24.0 |
| C3' |
C2' |
C1' |
H1' |
279.2 |
265.1 |
| C1' |
C2' |
C3' |
H2' |
125.3 |
241.4 |
| C1' |
C2' |
C3' |
H2'' |
234.7 |
118.7 |
| H2' |
C2' |
C3' |
H2'' |
109.5 |
237.3 |
| O3' |
C3' |
C2' |
C4' |
115.5 |
118.7 |
| O3' |
C3' |
C2' |
H3' |
238.8 |
237.4 |
| C2' |
C3' |
O3' |
HO3' |
180.1 |
63.3 |
| C4' |
C3' |
C2' |
H3' |
123.3 |
118.7 |
| C2' |
C3' |
C4' |
O4' |
8.7 |
336.2 |
| C2' |
C3' |
C4' |
C5' |
244.4 |
217.2 |
| C2' |
C3' |
C4' |
H4' |
130.1 |
94.9 |
| H2' |
C2' |
C1' |
O4' |
168.9 |
265.4 |
| H2' |
C2' |
C1' |
H1' |
44.5 |
146.5 |
| C1' |
C2' |
H2' |
C3' |
242.9 |
114.6 |
| C1' |
C2' |
H2' |
H2'' |
121.4 |
237.3 |
| C3' |
C2' |
H2' |
H2'' |
238.5 |
122.7 |
| H2' |
C2' |
C3' |
O3' |
319.5 |
237.3 |
| H2' |
C2' |
C3' |
C4' |
204.0 |
118.6 |
| H2' |
C2' |
C3' |
H3' |
80.7 |
359.8 |
| H2'' |
C2' |
C1' |
O4' |
278.3 |
142.6 |
| H2'' |
C2' |
C1' |
H1' |
153.9 |
23.8 |
| C1' |
C2' |
H2'' |
C3' |
117.1 |
245.4 |
| C1' |
C2' |
H2'' |
H2' |
238.6 |
122.7 |
| C3' |
C2' |
H2'' |
H2' |
121.4 |
237.3 |
| H2'' |
C2' |
C3' |
O3' |
210.0 |
0.0 |
| H2'' |
C2' |
C3' |
C4' |
94.6 |
241.3 |
| H2'' |
C2' |
C3' |
H3' |
331.2 |
122.6 |
| O3' |
C3' |
C2' |
H2' |
319.5 |
237.3 |
| O3' |
C3' |
C2' |
H2'' |
210.0 |
0.0 |
| C2' |
C3' |
O3' |
C4' |
248.3 |
245.2 |
| C2' |
C3' |
O3' |
H3' |
124.4 |
122.6 |
| C4' |
C3' |
O3' |
H3' |
236.1 |
237.4 |
| O3' |
C3' |
C4' |
O4' |
253.8 |
217.5 |
| O3' |
C3' |
C4' |
C5' |
129.5 |
98.6 |
| O3' |
C3' |
C4' |
H4' |
15.2 |
336.2 |
| C1' |
O4' |
C4' |
C3' |
19.0 |
40.4 |
| C4' |
C3' |
C2' |
H2' |
204.0 |
118.6 |
| C4' |
C3' |
C2' |
H2'' |
94.6 |
241.3 |
| C2' |
C3' |
C4' |
O3' |
114.9 |
118.7 |
| C2' |
C3' |
C4' |
H3' |
236.1 |
241.3 |
| O3' |
C3' |
C4' |
H3' |
121.2 |
122.6 |
| C4' |
C3' |
O3' |
HO3' |
291.7 |
178.1 |
| O4' |
C4' |
C3' |
C5' |
124.4 |
118.9 |
| O4' |
C4' |
C3' |
H4' |
238.7 |
241.3 |
| C5' |
C4' |
C3' |
H4' |
114.3 |
122.4 |
| C3' |
C4' |
C5' |
O5' |
48.1 |
176.9 |
| C3' |
C4' |
C5' |
H5' |
173.4 |
296.9 |
| C3' |
C4' |
C5' |
H5'' |
282.8 |
56.9 |
| H3' |
C3' |
C2' |
H2' |
80.7 |
359.8 |
| H3' |
C3' |
C2' |
H2'' |
331.2 |
122.6 |
| C2' |
C3' |
H3' |
O3' |
239.1 |
237.4 |
| C2' |
C3' |
H3' |
C4' |
117.7 |
114.8 |
| O3' |
C3' |
H3' |
C4' |
238.6 |
237.4 |
| H3' |
C3' |
O3' |
HO3' |
55.7 |
300.7 |
| H3' |
C3' |
C4' |
O4' |
132.6 |
94.9 |
| H3' |
C3' |
C4' |
C5' |
8.3 |
336.0 |
| H3' |
C3' |
C4' |
H4' |
253.9 |
213.6 |
| HO3' |
O3' |
C3' |
C4' |
291.7 |
178.1 |
| HO3' |
O3' |
C3' |
H3' |
55.7 |
300.7 |
| C4' |
O4' |
C1' |
H1' |
79.4 |
78.4 |
| O4' |
C4' |
C3' |
H3' |
132.6 |
94.9 |
| C3' |
C4' |
O4' |
C5' |
232.9 |
240.9 |
| C3' |
C4' |
O4' |
H4' |
118.1 |
118.7 |
| C5' |
C4' |
O4' |
H4' |
245.3 |
237.8 |
| O4' |
C4' |
C5' |
O5' |
286.4 |
61.5 |
| O4' |
C4' |
C5' |
H5' |
51.7 |
181.5 |
| O4' |
C4' |
C5' |
H5'' |
161.1 |
301.5 |
| C5' |
C4' |
C3' |
H3' |
8.3 |
336.0 |
| C3' |
C4' |
C5' |
O4' |
121.7 |
115.4 |
| C3' |
C4' |
C5' |
H4' |
242.7 |
237.7 |
| O4' |
C4' |
C5' |
H4' |
120.9 |
122.3 |
| O5' |
C5' |
C4' |
H5' |
234.7 |
240.0 |
| O5' |
C5' |
C4' |
H5'' |
125.3 |
120.0 |
| C4' |
C5' |
O5' |
P |
172.6 |
180.0 |
| H5' |
C5' |
C4' |
H5'' |
250.6 |
240.0 |
| H4' |
C4' |
C3' |
H3' |
253.9 |
213.6 |
| C3' |
C4' |
H4' |
O4' |
242.8 |
244.8 |
| C3' |
C4' |
H4' |
C5' |
122.9 |
122.6 |
| O4' |
C4' |
H4' |
C5' |
240.1 |
237.7 |
| H4' |
C4' |
C5' |
O5' |
165.5 |
299.2 |
| H4' |
C4' |
C5' |
H5' |
290.8 |
59.2 |
| H4' |
C4' |
C5' |
H5'' |
40.2 |
179.2 |
| O5' |
C5' |
C4' |
H4' |
165.5 |
299.2 |
| C4' |
C5' |
O5' |
H5' |
125.3 |
120.0 |
| C4' |
C5' |
O5' |
H5'' |
234.7 |
240.0 |
| H5' |
C5' |
O5' |
H5'' |
109.5 |
119.9 |
| C5' |
O5' |
P |
OP1 |
162.0 |
60.0 |
| C5' |
O5' |
P |
OP2 |
30.3 |
179.9 |
| C5' |
O5' |
P |
OP3 |
276.5 |
300.0 |
| H5' |
C5' |
C4' |
H4' |
290.8 |
59.2 |
| C4' |
C5' |
H5' |
O5' |
235.3 |
239.9 |
| C4' |
C5' |
H5' |
H5'' |
117.6 |
120.0 |
| O5' |
C5' |
H5' |
H5'' |
242.3 |
240.1 |
| H5' |
C5' |
O5' |
P |
47.4 |
59.9 |
| H5'' |
C5' |
C4' |
H4' |
40.2 |
179.2 |
| C4' |
C5' |
H5'' |
O5' |
124.8 |
120.1 |
| C4' |
C5' |
H5'' |
H5' |
242.4 |
240.0 |
| O5' |
C5' |
H5'' |
H5' |
117.7 |
119.9 |
| H5'' |
C5' |
O5' |
P |
297.9 |
300.0 |
| P |
O5' |
C5' |
H5' |
47.4 |
59.9 |
| P |
O5' |
C5' |
H5'' |
297.9 |
300.0 |
| OP1 |
P |
O5' |
OP2 |
131.6 |
240.1 |
| OP1 |
P |
O5' |
OP3 |
245.5 |
120.0 |
| OP2 |
P |
O5' |
OP3 |
113.8 |
239.9 |
| O5' |
P |
OP2 |
HOP2 |
180.0 |
180.0 |
| O5' |
P |
OP3 |
HOP3 |
180.0 |
300.0 |
| O5' |
P |
OP1 |
OP2 |
234.5 |
120.0 |
| O5' |
P |
OP1 |
OP3 |
111.8 |
240.0 |
| OP2 |
P |
OP1 |
OP3 |
237.3 |
120.0 |
| OP1 |
P |
OP2 |
HOP2 |
54.5 |
299.9 |
| OP1 |
P |
OP3 |
HOP3 |
295.0 |
180.0 |
| O5' |
P |
OP2 |
OP1 |
125.5 |
240.1 |
| O5' |
P |
OP2 |
OP3 |
248.5 |
120.1 |
| OP1 |
P |
OP2 |
OP3 |
123.0 |
240.0 |
| OP2 |
P |
OP3 |
HOP3 |
65.0 |
60.1 |
| O5' |
P |
OP3 |
OP1 |
244.9 |
120.0 |
| O5' |
P |
OP3 |
OP2 |
114.9 |
239.9 |
| OP1 |
P |
OP3 |
OP2 |
230.0 |
120.0 |
| OP3 |
P |
OP2 |
HOP2 |
291.5 |
59.9 |
| HOP2 |
OP2 |
P |
OP3 |
291.5 |
59.9 |