PDB Chemical Component PRK
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PRK
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
O |
1.280 |
1.208 |
| C |
CA |
1.513 |
1.507 |
| C |
OXT |
1.340 |
1.342 |
| N |
CA |
1.467 |
1.469 |
| CA |
CB |
1.540 |
1.530 |
| CB |
CG |
1.529 |
1.530 |
| CD |
CE |
1.533 |
1.530 |
| CD |
CG |
1.512 |
1.530 |
| CE |
NZ |
1.477 |
1.465 |
| NZ |
CAL |
1.337 |
1.347 |
| CAA |
CAF |
1.492 |
1.530 |
| OAD |
CAL |
1.246 |
1.213 |
| CAF |
CAL |
1.514 |
1.507 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
HA |
1.100 |
1.091 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.100 |
1.090 |
| CD |
HD2 |
1.100 |
1.090 |
| CD |
HD3 |
1.100 |
1.090 |
| CE |
HE2 |
1.100 |
1.090 |
| CE |
HE3 |
1.100 |
1.090 |
| CG |
HG2 |
1.100 |
1.090 |
| CG |
HG3 |
1.100 |
1.090 |
| NZ |
HZ |
1.000 |
0.970 |
| CAA |
HAA |
1.100 |
1.090 |
| CAA |
HAAA |
1.101 |
1.090 |
| CAA |
HAAB |
1.100 |
1.090 |
| CAF |
HAF |
1.100 |
1.090 |
| CAF |
HAFA |
1.100 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for PRK
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
119.6 |
120.0 |
| O |
C |
OXT |
124.0 |
120.0 |
| CA |
C |
OXT |
116.3 |
120.0 |
| C |
CA |
N |
110.9 |
109.5 |
| C |
CA |
CB |
109.4 |
109.5 |
| C |
CA |
HA |
108.9 |
109.5 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| N |
CA |
CB |
110.5 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
HA |
107.8 |
109.4 |
| CA |
CB |
CG |
112.3 |
109.5 |
| CB |
CA |
HA |
109.3 |
109.4 |
| CA |
CB |
HB2 |
108.5 |
109.4 |
| CA |
CB |
HB3 |
108.5 |
109.5 |
| CB |
CG |
CD |
110.8 |
109.4 |
| CG |
CB |
HB2 |
108.5 |
109.5 |
| CG |
CB |
HB3 |
108.5 |
109.5 |
| CB |
CG |
HG2 |
109.0 |
109.5 |
| CB |
CG |
HG3 |
109.0 |
109.5 |
| CE |
CD |
CG |
110.2 |
109.5 |
| CD |
CE |
NZ |
105.6 |
109.5 |
| CE |
CD |
HD2 |
109.2 |
109.5 |
| CE |
CD |
HD3 |
109.2 |
109.5 |
| CD |
CE |
HE2 |
110.8 |
109.5 |
| CD |
CE |
HE3 |
110.8 |
109.5 |
| CG |
CD |
HD2 |
109.2 |
109.5 |
| CG |
CD |
HD3 |
109.2 |
109.4 |
| CD |
CG |
HG2 |
109.0 |
109.4 |
| CD |
CG |
HG3 |
109.0 |
109.5 |
| CE |
NZ |
CAL |
121.0 |
120.0 |
| NZ |
CE |
HE2 |
110.8 |
109.5 |
| NZ |
CE |
HE3 |
110.8 |
109.4 |
| CE |
NZ |
HZ |
119.5 |
120.0 |
| NZ |
CAL |
OAD |
118.3 |
120.0 |
| NZ |
CAL |
CAF |
121.2 |
120.0 |
| CAL |
NZ |
HZ |
119.5 |
120.0 |
| CAA |
CAF |
CAL |
111.8 |
109.5 |
| CAF |
CAA |
HAA |
109.5 |
109.4 |
| CAF |
CAA |
HAAA |
109.5 |
109.5 |
| CAF |
CAA |
HAAB |
109.4 |
109.5 |
| CAA |
CAF |
HAF |
108.7 |
109.5 |
| CAA |
CAF |
HAFA |
108.7 |
109.5 |
| OAD |
CAL |
CAF |
120.4 |
120.0 |
| CAL |
CAF |
HAF |
108.7 |
109.4 |
| CAL |
CAF |
HAFA |
108.7 |
109.5 |
| H |
N |
H2 |
109.4 |
111.0 |
| HB2 |
CB |
HB3 |
110.4 |
109.5 |
| HD2 |
CD |
HD3 |
109.8 |
109.5 |
| HE2 |
CE |
HE3 |
108.1 |
109.5 |
| HG2 |
CG |
HG3 |
109.9 |
109.5 |
| HAA |
CAA |
HAAA |
109.5 |
109.5 |
| HAA |
CAA |
HAAB |
109.5 |
109.5 |
| HAAA |
CAA |
HAAB |
109.5 |
109.5 |
| HAF |
CAF |
HAFA |
110.2 |
109.4 |
Torsion Angles for PRK
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
O |
OXT |
177.3 |
180.3 |
| O |
C |
CA |
N |
160.9 |
340.0 |
| O |
C |
CA |
CB |
283.0 |
100.0 |
| O |
C |
CA |
HA |
42.4 |
220.0 |
| O |
C |
OXT |
HXT |
0.0 |
360.0 |
| O |
C |
CA |
OXT |
182.5 |
179.7 |
| CA |
C |
OXT |
HXT |
182.6 |
179.7 |
| N |
CA |
C |
CB |
237.9 |
239.9 |
| C |
CA |
N |
H |
180.0 |
60.0 |
| C |
CA |
N |
H2 |
300.0 |
184.0 |
| N |
CA |
C |
HA |
118.4 |
120.0 |
| C |
CA |
CB |
CG |
173.4 |
175.0 |
| CB |
CA |
C |
HA |
240.6 |
240.0 |
| C |
CA |
CB |
HB2 |
293.4 |
295.0 |
| C |
CA |
CB |
HB3 |
53.4 |
55.0 |
| O |
C |
OXT |
CA |
177.4 |
180.3 |
| OXT |
C |
CA |
N |
338.4 |
160.3 |
| OXT |
C |
CA |
CB |
100.6 |
280.3 |
| OXT |
C |
CA |
HA |
220.0 |
40.3 |
| N |
CA |
C |
OXT |
338.4 |
160.3 |
| C |
CA |
N |
CB |
121.5 |
120.0 |
| C |
CA |
N |
HA |
240.9 |
240.0 |
| N |
CA |
CB |
CG |
295.8 |
295.1 |
| CB |
CA |
N |
HA |
119.4 |
119.9 |
| N |
CA |
CB |
HB2 |
55.8 |
55.0 |
| N |
CA |
CB |
HB3 |
175.8 |
175.0 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| CB |
CA |
C |
OXT |
100.6 |
280.3 |
| C |
CA |
CB |
N |
237.6 |
240.0 |
| C |
CA |
CB |
HA |
119.2 |
120.0 |
| CB |
CA |
N |
H |
58.5 |
299.9 |
| CB |
CA |
N |
H2 |
178.5 |
63.9 |
| N |
CA |
CB |
HA |
241.5 |
240.0 |
| CA |
CB |
CG |
CD |
202.0 |
180.0 |
| CG |
CB |
CA |
HB2 |
240.0 |
240.0 |
| CG |
CB |
CA |
HB3 |
120.0 |
120.0 |
| CA |
CB |
CG |
HG2 |
322.0 |
299.9 |
| CA |
CB |
CG |
HG3 |
82.0 |
60.0 |
| HB2 |
CB |
CA |
HB3 |
240.0 |
240.0 |
| CG |
CB |
CA |
HA |
54.2 |
55.0 |
| CA |
CB |
CG |
HB2 |
120.0 |
119.9 |
| CA |
CB |
CG |
HB3 |
240.0 |
240.0 |
| CE |
CD |
CG |
CB |
176.1 |
180.0 |
| CB |
CG |
CD |
HD2 |
56.1 |
60.0 |
| CB |
CG |
CD |
HD3 |
296.1 |
300.0 |
| CD |
CG |
CB |
HG2 |
240.0 |
240.0 |
| CD |
CG |
CB |
HG3 |
120.0 |
120.0 |
| HB2 |
CB |
CG |
HB3 |
120.0 |
120.0 |
| HG2 |
CG |
CB |
HG3 |
240.0 |
240.0 |
| CB |
CG |
CD |
CE |
176.1 |
180.0 |
| CG |
CD |
CE |
HD2 |
240.0 |
240.0 |
| CG |
CD |
CE |
HD3 |
120.0 |
120.0 |
| CE |
CD |
CG |
HG2 |
56.2 |
60.0 |
| CE |
CD |
CG |
HG3 |
296.1 |
300.0 |
| CD |
CE |
NZ |
CAL |
247.2 |
180.0 |
| NZ |
CE |
CD |
HE2 |
240.0 |
240.0 |
| NZ |
CE |
CD |
HE3 |
120.0 |
120.0 |
| CD |
CE |
NZ |
HZ |
67.2 |
360.0 |
| HD2 |
CD |
CE |
HD3 |
240.0 |
240.0 |
| HE2 |
CE |
CD |
HE3 |
240.0 |
240.0 |
| CD |
CG |
CB |
HB2 |
82.0 |
60.0 |
| CD |
CG |
CB |
HB3 |
322.0 |
300.0 |
| CB |
CG |
CD |
HG2 |
120.0 |
120.0 |
| CB |
CG |
CD |
HG3 |
240.0 |
240.0 |
| CG |
CD |
CE |
NZ |
185.7 |
180.0 |
| CE |
CD |
CG |
HD2 |
120.0 |
120.0 |
| CE |
CD |
CG |
HD3 |
240.0 |
240.0 |
| CG |
CD |
CE |
HE2 |
305.7 |
300.0 |
| CG |
CD |
CE |
HE3 |
65.6 |
60.0 |
| HD2 |
CD |
CG |
HD3 |
120.0 |
120.0 |
| HG2 |
CG |
CD |
HG3 |
120.0 |
120.0 |
| NZ |
CE |
CD |
CG |
185.7 |
180.0 |
| NZ |
CE |
CD |
HD2 |
305.6 |
300.0 |
| NZ |
CE |
CD |
HD3 |
65.7 |
60.0 |
| CD |
CE |
NZ |
HE2 |
120.0 |
120.0 |
| CD |
CE |
NZ |
HE3 |
240.0 |
240.0 |
| CE |
NZ |
CAL |
OAD |
358.4 |
0.1 |
| CE |
NZ |
CAL |
CAF |
178.7 |
180.0 |
| CAL |
NZ |
CE |
HZ |
180.0 |
180.0 |
| HE2 |
CE |
NZ |
HE3 |
120.0 |
120.0 |
| CAL |
NZ |
CE |
HE2 |
127.2 |
59.9 |
| CAL |
NZ |
CE |
HE3 |
7.2 |
300.0 |
| CE |
NZ |
CAL |
HZ |
180.0 |
180.0 |
| CAA |
CAF |
CAL |
NZ |
8.9 |
180.0 |
| OAD |
CAL |
NZ |
CAF |
179.6 |
180.1 |
| NZ |
CAL |
CAF |
HAF |
248.9 |
60.0 |
| NZ |
CAL |
CAF |
HAFA |
128.9 |
300.1 |
| NZ |
CAL |
CAF |
CAA |
8.9 |
180.0 |
| OAD |
CAL |
CAF |
CAA |
189.3 |
359.9 |
| CAL |
CAF |
CAA |
HAF |
240.0 |
240.0 |
| CAL |
CAF |
CAA |
HAFA |
120.0 |
120.1 |
| HAA |
CAA |
CAF |
HAAA |
240.0 |
240.0 |
| HAA |
CAA |
CAF |
HAAB |
120.0 |
120.0 |
| HAAA |
CAA |
CAF |
HAAB |
240.0 |
240.0 |
| HAF |
CAF |
CAA |
HAFA |
240.0 |
240.0 |
| NZ |
CAL |
OAD |
CAF |
180.4 |
179.9 |
| OAD |
CAL |
NZ |
HZ |
178.4 |
180.1 |
| CAA |
CAF |
CAL |
OAD |
189.3 |
359.9 |
| OAD |
CAL |
CAF |
HAF |
69.3 |
239.9 |
| OAD |
CAL |
CAF |
HAFA |
309.3 |
120.0 |
| NZ |
CAL |
CAF |
OAD |
179.6 |
180.1 |
| CAF |
CAL |
NZ |
HZ |
358.7 |
360.0 |
| CAL |
CAF |
CAA |
HAA |
180.0 |
300.0 |
| CAL |
CAF |
CAA |
HAAA |
300.0 |
60.0 |
| CAL |
CAF |
CAA |
HAAB |
60.0 |
180.0 |
| CAA |
CAF |
CAL |
HAF |
120.0 |
120.0 |
| CAA |
CAF |
CAL |
HAFA |
240.0 |
239.9 |
| HAF |
CAF |
CAL |
HAFA |
120.0 |
119.9 |
| H |
N |
CA |
CB |
58.5 |
299.9 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
HA |
299.1 |
180.0 |
| H2 |
N |
CA |
CB |
178.5 |
63.9 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
CA |
HA |
59.1 |
304.0 |
| HA |
CA |
C |
OXT |
220.0 |
40.3 |
| C |
CA |
HA |
N |
120.4 |
120.0 |
| C |
CA |
HA |
CB |
240.5 |
240.0 |
| N |
CA |
HA |
CB |
120.1 |
120.0 |
| HA |
CA |
N |
H |
299.1 |
180.0 |
| HA |
CA |
N |
H2 |
59.1 |
304.0 |
| HA |
CA |
CB |
CG |
54.2 |
55.0 |
| HA |
CA |
CB |
HB2 |
174.2 |
175.0 |
| HA |
CA |
CB |
HB3 |
294.2 |
295.0 |
| CA |
CB |
HB2 |
CG |
237.7 |
240.1 |
| HB2 |
CB |
CA |
HA |
174.2 |
175.0 |
| CA |
CB |
HB2 |
HB3 |
118.8 |
120.0 |
| HB2 |
CB |
CG |
CD |
82.0 |
60.0 |
| CG |
CB |
HB2 |
HB3 |
241.2 |
240.0 |
| HB2 |
CB |
CG |
HG2 |
202.0 |
180.0 |
| HB2 |
CB |
CG |
HG3 |
322.0 |
300.0 |
| CA |
CB |
HB3 |
CG |
122.4 |
120.0 |
| HB3 |
CB |
CA |
HA |
294.2 |
295.0 |
| CA |
CB |
HB3 |
HB2 |
241.2 |
240.0 |
| HB3 |
CB |
CG |
CD |
322.0 |
300.0 |
| CG |
CB |
HB3 |
HB2 |
118.8 |
120.0 |
| HB3 |
CB |
CG |
HG2 |
82.0 |
60.0 |
| HB3 |
CB |
CG |
HG3 |
202.0 |
180.0 |
| CE |
CD |
HD2 |
CG |
239.4 |
240.0 |
| HD2 |
CD |
CE |
NZ |
305.6 |
300.0 |
| CE |
CD |
HD2 |
HD3 |
119.7 |
120.0 |
| HD2 |
CD |
CE |
HE2 |
65.6 |
60.0 |
| HD2 |
CD |
CE |
HE3 |
185.6 |
180.0 |
| CG |
CD |
HD2 |
HD3 |
240.3 |
240.0 |
| HD2 |
CD |
CG |
HG2 |
296.2 |
300.0 |
| HD2 |
CD |
CG |
HG3 |
176.2 |
180.0 |
| CE |
CD |
HD3 |
CG |
120.6 |
120.0 |
| HD3 |
CD |
CE |
NZ |
65.7 |
60.0 |
| CE |
CD |
HD3 |
HD2 |
240.3 |
240.0 |
| HD3 |
CD |
CE |
HE2 |
185.7 |
180.0 |
| HD3 |
CD |
CE |
HE3 |
305.7 |
300.0 |
| CG |
CD |
HD3 |
HD2 |
119.7 |
120.0 |
| HD3 |
CD |
CG |
HG2 |
176.1 |
180.0 |
| HD3 |
CD |
CG |
HG3 |
56.1 |
60.0 |
| HE2 |
CE |
CD |
CG |
305.7 |
300.0 |
| CD |
CE |
HE2 |
NZ |
243.1 |
240.0 |
| HE2 |
CE |
CD |
HD2 |
65.6 |
60.0 |
| HE2 |
CE |
CD |
HD3 |
185.7 |
180.0 |
| CD |
CE |
HE2 |
HE3 |
121.6 |
120.0 |
| HE2 |
CE |
NZ |
CAL |
127.2 |
59.9 |
| NZ |
CE |
HE2 |
HE3 |
238.4 |
240.0 |
| HE2 |
CE |
NZ |
HZ |
307.2 |
240.0 |
| HE3 |
CE |
CD |
CG |
65.6 |
60.0 |
| CD |
CE |
HE3 |
NZ |
116.9 |
120.0 |
| HE3 |
CE |
CD |
HD2 |
185.6 |
180.0 |
| HE3 |
CE |
CD |
HD3 |
305.7 |
300.0 |
| CD |
CE |
HE3 |
HE2 |
238.5 |
240.0 |
| HE3 |
CE |
NZ |
CAL |
7.2 |
300.0 |
| NZ |
CE |
HE3 |
HE2 |
121.6 |
120.0 |
| HE3 |
CE |
NZ |
HZ |
187.2 |
120.0 |
| CB |
CG |
HG2 |
CD |
238.9 |
240.0 |
| HG2 |
CG |
CB |
HB2 |
202.0 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
82.0 |
60.0 |
| CB |
CG |
HG2 |
HG3 |
119.5 |
120.0 |
| HG2 |
CG |
CD |
HD2 |
296.2 |
300.0 |
| HG2 |
CG |
CD |
HD3 |
176.1 |
180.0 |
| CD |
CG |
HG2 |
HG3 |
240.5 |
240.0 |
| CB |
CG |
HG3 |
CD |
121.1 |
120.0 |
| HG3 |
CG |
CB |
HB2 |
322.0 |
300.0 |
| HG3 |
CG |
CB |
HB3 |
202.0 |
180.0 |
| CB |
CG |
HG3 |
HG2 |
240.6 |
240.0 |
| HG3 |
CG |
CD |
HD2 |
176.2 |
180.0 |
| HG3 |
CG |
CD |
HD3 |
56.1 |
60.0 |
| CD |
CG |
HG3 |
HG2 |
119.5 |
120.0 |
| CE |
NZ |
HZ |
CAL |
180.0 |
180.0 |
| HZ |
NZ |
CE |
HE2 |
307.2 |
240.0 |
| HZ |
NZ |
CE |
HE3 |
187.2 |
120.0 |
| HZ |
NZ |
CAL |
OAD |
178.4 |
180.1 |
| HZ |
NZ |
CAL |
CAF |
358.7 |
360.0 |
| HAA |
CAA |
CAF |
CAL |
180.0 |
300.0 |
| CAF |
CAA |
HAA |
HAAA |
120.0 |
120.0 |
| CAF |
CAA |
HAA |
HAAB |
240.0 |
240.0 |
| HAA |
CAA |
CAF |
HAF |
300.0 |
60.0 |
| HAA |
CAA |
CAF |
HAFA |
60.0 |
180.0 |
| HAAA |
CAA |
HAA |
HAAB |
120.0 |
120.0 |
| HAAA |
CAA |
CAF |
CAL |
300.0 |
60.0 |
| CAF |
CAA |
HAAA |
HAA |
240.0 |
240.0 |
| CAF |
CAA |
HAAA |
HAAB |
119.9 |
120.0 |
| HAAA |
CAA |
CAF |
HAF |
60.0 |
180.0 |
| HAAA |
CAA |
CAF |
HAFA |
180.0 |
300.0 |
| HAA |
CAA |
HAAA |
HAAB |
240.0 |
240.0 |
| HAAB |
CAA |
CAF |
CAL |
60.0 |
180.0 |
| CAF |
CAA |
HAAB |
HAA |
120.0 |
120.0 |
| CAF |
CAA |
HAAB |
HAAA |
240.1 |
240.0 |
| HAAB |
CAA |
CAF |
HAF |
180.0 |
300.0 |
| HAAB |
CAA |
CAF |
HAFA |
300.0 |
60.0 |
| HAA |
CAA |
HAAB |
HAAA |
120.0 |
120.0 |
| CAA |
CAF |
HAF |
CAL |
238.1 |
240.0 |
| HAF |
CAF |
CAA |
HAA |
300.0 |
60.0 |
| HAF |
CAF |
CAA |
HAAA |
60.0 |
180.0 |
| HAF |
CAF |
CAA |
HAAB |
180.0 |
300.0 |
| CAA |
CAF |
HAF |
HAFA |
119.0 |
120.0 |
| CAL |
CAF |
HAF |
HAFA |
241.0 |
240.0 |
| CAA |
CAF |
HAFA |
CAL |
121.9 |
120.1 |
| HAFA |
CAF |
CAA |
HAA |
60.0 |
180.0 |
| HAFA |
CAF |
CAA |
HAAA |
180.0 |
300.0 |
| HAFA |
CAF |
CAA |
HAAB |
300.0 |
60.0 |
| CAA |
CAF |
HAFA |
HAF |
241.0 |
240.0 |
| CAL |
CAF |
HAFA |
HAF |
119.0 |
119.9 |