PDB Chemical Component PRH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PRH

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.335 1.370
N1 C6 1.391 1.475
N1 HN1 1.020 0.970
C2 N3 1.337 1.307
C2 H2 1.103 1.080
N3 C4 1.405 1.365
C4 C5 1.363 1.373
C4 N9 1.369 1.362
C5 C6 1.448 1.511
C5 N7 1.351 1.324
C6 O6 1.603 1.428
C6 H6 1.115 1.090
O6 HO6 0.951 0.967
N7 C8 1.345 1.311
N7 HN7 1.021 0.970
C8 N9 1.342 1.365
C8 H8 1.103 1.080
N9 C1' 1.459 1.465
C1' C2' 1.547 1.550
C1' O4' 1.406 1.444
C1' H1' 1.115 1.091
C2' O2' 1.432 1.430
C2' C3' 1.557 1.551
C2' H2' 1.116 1.090
O2' HO2' 0.950 0.967
C3' O3' 1.433 1.429
C3' C4' 1.603 1.541
C3' H3' 1.115 1.089
O3' HO3' 0.950 0.967
C4' O4' 1.382 1.437
C4' C5' 1.534 1.530
C4' H4' 1.114 1.089
C5' O5' 1.433 1.429
C5' H5'1 1.115 1.090
C5' H5'2 1.114 1.090
O5' HO5' 0.951 0.967

Bond Angles for PRH

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 121.0 120.3
C2 N1 HN1 108.1 119.9
N1 C2 N3 122.2 122.0
N1 C2 H2 118.8 119.0
C6 N1 HN1 108.0 119.9
N1 C6 C5 117.7 106.2
N1 C6 O6 109.7 110.2
N1 C6 H6 104.4 110.1
N3 C2 H2 119.0 119.0
C2 N3 C4 120.2 118.4
N3 C4 C5 119.9 122.0
N3 C4 N9 132.5 131.4
C5 C4 N9 107.6 106.6
C4 C5 C6 119.0 120.9
C4 C5 N7 107.7 108.3
C4 N9 C8 107.4 106.8
C4 N9 C1' 125.6 126.6
C6 C5 N7 133.3 130.8
C5 C6 O6 112.3 110.1
C5 C6 H6 101.3 110.1
C5 N7 C8 108.2 109.3
C5 N7 HN7 126.1 125.4
O6 C6 H6 110.7 110.1
C6 O6 HO6 109.7 106.8
C8 N7 HN7 125.8 125.3
N7 C8 N9 109.1 108.9
N7 C8 H8 125.5 125.5
N9 C8 H8 125.4 125.6
C8 N9 C1' 126.9 126.5
N9 C1' C2' 111.4 110.8
N9 C1' O4' 111.9 110.6
N9 C1' H1' 105.3 110.5
C2' C1' O4' 105.7 103.5
C2' C1' H1' 111.6 110.6
C1' C2' O2' 110.0 110.9
C1' C2' C3' 110.2 102.1
C1' C2' H2' 108.9 110.9
O4' C1' H1' 111.1 110.6
C1' O4' C4' 106.5 107.0
O2' C2' C3' 110.3 110.9
O2' C2' H2' 108.9 110.8
C2' O2' HO2' 109.9 106.8
C3' C2' H2' 108.6 111.0
C2' C3' O3' 111.1 110.5
C2' C3' C4' 91.1 104.0
C2' C3' H3' 120.3 110.5
O3' C3' C4' 111.5 110.8
O3' C3' H3' 102.9 110.4
C3' O3' HO3' 111.1 106.8
C4' C3' H3' 120.0 110.5
C3' C4' O4' 111.9 107.4
C3' C4' C5' 111.9 109.9
C3' C4' H4' 106.0 109.9
O4' C4' C5' 109.2 109.8
O4' C4' H4' 108.9 109.9
C5' C4' H4' 108.8 109.9
C4' C5' O5' 110.7 109.5
C4' C5' H5'1 111.8 109.5
C4' C5' H5'2 111.8 109.5
O5' C5' H5'1 111.7 109.5
O5' C5' H5'2 111.7 109.4
C5' O5' HO5' 110.7 106.8
H5'1 C5' H5'2 98.6 109.4

Torsion Angles for PRH

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 HN1 125.2 180.1
C2 N1 C6 C5 359.8 36.4
C2 N1 C6 O6 229.7 277.2
C2 N1 C6 H6 111.0 155.6
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 360.0 1.7
C2 N1 C6 HN1 234.7 179.9
C6 N1 C2 N3 0.1 330.9
C6 N1 C2 H2 180.0 150.8
C4 C5 C6 N1 0.4 337.9
N1 C6 C5 N7 180.4 157.5
C5 C6 N1 O6 130.1 119.2
C5 C6 N1 H6 248.8 240.8
O6 C6 N1 H6 118.7 121.6
N1 C6 O6 HO6 180.0 296.9
C2 N1 HN1 C6 132.6 180.1
HN1 N1 C2 N3 234.8 150.8
HN1 N1 C2 H2 54.8 330.8
HN1 N1 C6 C5 125.0 216.5
HN1 N1 C6 O6 354.9 97.3
HN1 N1 C6 H6 236.3 335.6
N3 C2 N1 C6 0.1 330.9
N3 C2 N1 HN1 234.8 150.8
N1 C2 N3 H2 180.0 180.0
C2 N3 C4 C5 0.2 13.0
C2 N3 C4 N9 180.3 192.0
H2 C2 N1 C6 180.0 150.8
H2 C2 N1 HN1 54.8 330.8
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 180.0 181.8
C4 N3 C2 H2 180.0 181.8
C5 C4 N3 N9 179.9 181.0
N3 C4 C5 C6 359.6 359.4
N3 C4 C5 N7 179.6 179.6
N3 C4 N9 C8 180.3 180.5
N3 C4 N9 C1' 3.8 0.8
N1 C6 C5 C4 0.4 337.9
N3 C4 C5 N9 180.1 179.2
C5 C4 N9 C8 0.4 359.6
C5 C4 N9 C1' 183.9 179.9
C6 C5 C4 N7 180.0 179.7
C4 C5 C6 O6 129.3 97.1
C4 C5 C6 H6 247.4 218.7
C4 C5 N7 C8 0.4 359.7
C4 C5 N7 HN7 180.4 179.7
N3 C4 N9 C5 179.9 180.9
N9 C4 C5 C6 179.5 180.1
N9 C4 C5 N7 359.5 0.4
N7 C8 N9 C4 359.8 0.3
C4 N9 C8 H8 179.8 180.2
C8 N9 C4 C1' 176.5 179.7
C4 N9 C1' C2' 139.3 89.1
C4 N9 C1' O4' 257.3 203.2
C4 N9 C1' H1' 18.1 326.1
C5 C6 N1 HN1 125.0 216.5
N1 C6 C5 O6 231.1 240.7
N1 C6 C5 H6 113.0 119.1
C6 C5 C4 N9 179.5 180.1
C4 C5 C6 N7 180.0 180.3
C6 C5 N7 C8 180.4 180.1
C6 C5 N7 HN7 0.3 0.1
O6 C6 C5 H6 241.9 238.4
C5 C6 O6 HO6 47.0 180.0
N7 C5 C4 N9 359.5 0.4
C4 C5 N7 C6 180.0 179.7
N7 C5 C6 O6 309.3 276.8
N7 C5 C6 H6 67.5 38.4
C8 N7 C5 HN7 180.0 180.0
C5 N7 C8 N9 359.9 0.0
C5 N7 C8 H8 179.9 180.0
O6 C6 N1 HN1 354.9 97.3
N1 C6 O6 C5 132.9 116.8
N1 C6 O6 H6 245.3 238.4
O6 C6 C5 N7 309.3 276.8
C5 C6 O6 H6 112.4 121.6
H6 C6 N1 HN1 236.3 335.6
N1 C6 H6 C5 237.3 243.2
N1 C6 H6 O6 118.0 121.7
H6 C6 C5 N7 67.5 38.4
C5 C6 H6 O6 240.7 238.4
H6 C6 O6 HO6 294.7 58.4
HO6 O6 C6 H6 294.7 58.4
C4 N9 C8 N7 359.8 0.3
C5 N7 C8 HN7 180.0 180.0
N9 C8 N7 H8 180.0 180.0
N7 C8 N9 C1' 176.3 179.9
C5 N7 HN7 C8 180.0 180.0
HN7 N7 C8 N9 179.9 180.0
HN7 N7 C8 H8 359.9 0.0
C4 N9 C8 C1' 183.5 180.3
N9 C8 N7 HN7 179.9 180.0
N7 C8 N9 H8 180.0 180.0
C8 N9 C1' C2' 323.4 269.4
C8 N9 C1' O4' 81.5 23.6
C8 N9 C1' H1' 202.3 146.5
H8 C8 N7 HN7 359.9 0.0
N7 C8 H8 N9 180.0 180.0
H8 C8 N9 C1' 356.3 359.9
C4 N9 C1' C8 175.8 179.6
C1' N9 C8 H8 356.3 359.9
C2' C1' N9 O4' 242.0 245.8
C2' C1' N9 H1' 121.2 123.0
N9 C1' C2' O2' 234.1 273.9
N9 C1' C2' C3' 112.4 155.7
N9 C1' C2' H2' 353.3 37.4
O4' C1' N9 H1' 239.2 237.2
N9 C1' O4' C4' 222.5 201.2
N9 C1' C2' O4' 121.7 118.6
N9 C1' C2' H1' 242.6 237.1
O4' C1' C2' H1' 120.9 118.5
C2' C1' O4' C4' 343.9 319.9
O2' C2' C1' C3' 121.7 118.1
O2' C2' C1' H2' 240.8 236.5
C1' C2' O2' HO2' 180.0 180.0
C3' C2' C1' H2' 119.0 118.4
C1' C2' C3' O3' 139.5 97.9
C1' C2' C3' C4' 25.9 339.0
C1' C2' C3' H3' 259.7 220.4
N9 C1' O4' C2' 238.6 241.3
N9 C1' O4' H1' 117.4 122.8
C2' C1' O4' H1' 238.8 241.5
O4' C1' C2' O2' 112.4 155.3
O4' C1' C2' C3' 350.7 37.1
O4' C1' C2' H2' 231.6 278.8
C3' C4' O4' C1' 36.9 26.5
C1' O4' C4' C5' 161.4 145.9
C1' O4' C4' H4' 280.1 266.9
N9 C1' H1' C2' 121.0 123.0
N9 C1' H1' O4' 238.7 237.1
C2' C1' H1' O4' 117.7 114.1
H1' C1' C2' O2' 351.5 36.7
H1' C1' C2' C3' 229.8 278.6
H1' C1' C2' H2' 110.7 160.2
H1' C1' O4' C4' 105.1 78.5
O2' C2' C1' O4' 112.4 155.3
O2' C2' C1' H1' 351.5 36.7
C1' C2' O2' C3' 238.3 247.3
C1' C2' O2' H2' 119.3 123.6
C3' C2' O2' H2' 240.9 236.3
O2' C2' C3' O3' 17.9 339.8
O2' C2' C3' C4' 264.3 220.9
O2' C2' C3' H3' 138.1 102.3
C3' C2' C1' O4' 350.7 37.1
C3' C2' C1' H1' 229.8 278.6
C1' C2' C3' O2' 121.5 118.2
C1' C2' C3' H2' 240.8 241.7
O2' C2' C3' H2' 119.2 123.6
C3' C2' O2' HO2' 301.6 292.7
O3' C3' C2' C4' 113.6 118.9
O3' C3' C2' H3' 239.8 237.5
C2' C3' O3' HO3' 180.0 180.1
C4' C3' C2' H3' 126.2 118.6
C2' C3' C4' O4' 321.8 358.1
C2' C3' C4' C5' 198.9 238.6
C2' C3' C4' H4' 80.4 117.6
H2' C2' C1' O4' 231.6 278.8
H2' C2' C1' H1' 110.7 160.2
C1' C2' H2' O2' 240.1 236.4
C1' C2' H2' C3' 120.0 112.8
O2' C2' H2' C3' 239.9 236.4
H2' C2' O2' HO2' 60.7 56.4
H2' C2' C3' O3' 258.7 216.2
H2' C2' C3' C4' 145.1 97.3
H2' C2' C3' H3' 18.9 338.7
HO2' O2' C2' C3' 301.6 292.7
HO2' O2' C2' H2' 60.7 56.4
O3' C3' C2' H2' 258.7 216.2
C2' C3' O3' C4' 260.0 245.3
C2' C3' O3' H3' 130.1 122.5
C4' C3' O3' H3' 230.1 237.2
O3' C3' C4' O4' 208.6 239.3
O3' C3' C4' C5' 85.7 119.9
O3' C3' C4' H4' 327.2 358.9
C1' O4' C4' C3' 36.9 26.5
C4' C3' C2' H2' 145.1 97.3
C2' C3' C4' O3' 113.2 118.7
C2' C3' C4' H3' 233.5 241.4
O3' C3' C4' H3' 120.3 122.7
C4' C3' O3' HO3' 280.0 294.8
O4' C4' C3' C5' 122.9 119.4
O4' C4' C3' H4' 241.4 240.4
C5' C4' C3' H4' 118.5 121.0
C3' C4' C5' O5' 46.6 184.7
C3' C4' C5' H5'1 171.8 64.6
C3' C4' C5' H5'2 281.3 304.7
H3' C3' C2' H2' 18.9 338.7
C2' C3' H3' O3' 235.8 237.5
C2' C3' H3' C4' 111.3 114.5
O3' C3' H3' C4' 235.5 237.1
H3' C3' O3' HO3' 49.9 57.5
H3' C3' C4' O4' 88.3 116.6
H3' C3' C4' C5' 325.4 357.2
H3' C3' C4' H4' 206.8 236.2
HO3' O3' C3' C4' 280.0 294.8
HO3' O3' C3' H3' 49.9 57.5
C4' O4' C1' H1' 105.1 78.5
O4' C4' C3' H3' 88.3 116.6
C3' C4' O4' C5' 235.5 240.5
C3' C4' O4' H4' 116.8 119.5
C5' C4' O4' H4' 241.3 239.0
O4' C4' C5' O5' 282.1 66.8
O4' C4' C5' H5'1 47.3 306.7
O4' C4' C5' H5'2 156.8 186.7
C5' C4' C3' H3' 325.4 357.2
C3' C4' C5' O4' 124.5 118.0
C3' C4' C5' H4' 243.2 239.0
O4' C4' C5' H4' 118.7 121.0
O5' C5' C4' H5'1 234.8 120.1
O5' C5' C4' H5'2 125.3 240.0
C4' C5' O5' HO5' 180.0 180.0
H5'1 C5' C4' H5'2 250.5 120.0
H4' C4' C3' H3' 206.8 236.2
C3' C4' H4' O4' 239.5 242.0
C3' C4' H4' C5' 120.5 121.0
O4' C4' H4' C5' 241.1 239.0
H4' C4' C5' O5' 163.4 305.7
H4' C4' C5' H5'1 288.6 185.6
H4' C4' C5' H5'2 38.1 65.7
O5' C5' C4' H4' 163.4 305.7
C4' C5' O5' H5'1 125.3 239.9
C4' C5' O5' H5'2 234.7 120.0
H5'1 C5' O5' H5'2 109.4 240.0
H5'1 C5' C4' H4' 288.6 185.6
C4' C5' H5'1 O5' 235.3 120.1
C4' C5' H5'1 H5'2 117.7 240.0
O5' C5' H5'1 H5'2 242.4 120.0
H5'1 C5' O5' HO5' 54.7 300.0
H5'2 C5' C4' H4' 38.1 65.7
C4' C5' H5'2 O5' 124.7 240.0
C4' C5' H5'2 H5'1 242.3 120.0
O5' C5' H5'2 H5'1 117.6 240.0
H5'2 C5' O5' HO5' 305.3 60.0
HO5' O5' C5' H5'1 54.7 300.0
HO5' O5' C5' H5'2 305.3 60.0