PDB Chemical Component PRF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PRF

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.389 1.363
N1 C6 1.375 1.352
N1 H91 1.020 0.970
C2 N3 1.300 1.313
C2 N2 1.291 1.372
N3 C4 1.465 1.341
C4 C5 1.335 1.400
C4 N9 1.301 1.363
C5 C6 1.484 1.412
C5 C7 1.471 1.462
C6 O6 1.213 1.219
C7 C10 1.496 1.507
C7 C8 1.323 1.343
C10 N11 1.487 1.469
C10 H101 1.115 1.089
C10 H102 1.114 1.090
N11 H111 1.019 1.010
N11 H112 1.020 1.008
C8 N9 1.292 1.373
C8 H81 1.104 1.080
N9 HN91 1.021 0.971
N2 HN21 1.020 0.970
N2 HN22 1.020 0.970

Bond Angles for PRF

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 122.3 120.2
C2 N1 H91 119.4 119.9
N1 C2 N3 120.5 122.1
N1 C2 N2 117.9 119.0
C6 N1 H91 118.3 119.9
N1 C6 C5 117.6 118.2
N1 C6 O6 123.7 120.9
N3 C2 N2 121.6 118.9
C2 N3 C4 120.8 121.2
C2 N2 HN21 117.8 120.0
C2 N2 HN22 109.2 120.0
N3 C4 C5 120.4 119.1
N3 C4 N9 129.7 133.6
C5 C4 N9 109.9 107.3
C4 C5 C6 118.4 119.2
C4 C5 C7 103.3 106.3
C4 N9 C8 111.8 110.1
C4 N9 HN91 124.4 125.0
C6 C5 C7 138.2 134.5
C5 C6 O6 118.7 120.9
C5 C7 C10 128.2 126.7
C5 C7 C8 106.1 106.7
C10 C7 C8 125.7 126.6
C7 C10 N11 121.0 109.4
C7 C10 H101 108.1 109.4
C7 C10 H102 108.1 109.5
C7 C8 N9 108.9 109.6
C7 C8 H81 126.5 125.2
N11 C10 H101 108.1 109.5
N11 C10 H102 108.1 109.5
C10 N11 H111 121.1 106.7
C10 N11 H112 108.1 106.8
H101 C10 H102 101.9 109.5
H111 N11 H112 108.1 106.6
N9 C8 H81 124.6 125.2
C8 N9 HN91 123.8 124.9
HN21 N2 HN22 109.2 119.9

Torsion Angles for PRF

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 H91 180.0 179.9
C2 N1 C6 C5 0.0 359.8
C2 N1 C6 O6 179.8 180.0
N3 C2 N1 N2 180.0 179.9
N1 C2 N3 C4 359.6 0.1
N1 C2 N2 HN21 180.0 180.0
N1 C2 N2 HN22 54.8 360.0
C2 N1 C6 H91 180.0 180.1
C6 N1 C2 N3 0.4 359.9
C6 N1 C2 N2 180.4 180.0
C4 C5 C6 N1 359.6 0.5
N1 C6 C5 C7 180.2 179.6
C5 C6 N1 O6 180.2 179.8
C2 N1 H91 C6 180.0 179.9
H91 N1 C2 N3 180.4 180.0
H91 N1 C2 N2 0.4 0.1
H91 N1 C6 C5 180.0 179.7
H91 N1 C6 O6 359.8 359.9
N3 C2 N1 C6 0.4 359.9
N3 C2 N1 H91 180.4 180.0
N1 C2 N3 N2 180.0 180.1
N3 C2 N2 HN21 0.0 0.0
N3 C2 N2 HN22 234.8 180.1
C2 N3 C4 C5 359.9 0.2
C2 N3 C4 N9 180.2 179.9
N2 C2 N1 C6 180.4 180.0
N2 C2 N1 H91 0.4 0.1
N1 C2 N2 N3 180.0 179.9
N2 C2 N3 C4 179.6 180.0
HN21 N2 C2 HN22 125.3 180.0
C4 N3 C2 N2 179.6 180.0
C5 C4 N3 N9 179.8 180.3
N3 C4 C5 C6 0.5 359.5
N3 C4 C5 C7 180.0 180.2
N3 C4 N9 C8 179.9 180.0
N3 C4 N9 HN91 359.8 0.0
N1 C6 C5 C4 359.6 0.5
N3 C4 C5 N9 180.2 179.8
C5 C4 N9 C8 0.1 359.7
C5 C4 N9 HN91 180.1 179.8
C6 C5 C4 C7 180.4 179.4
C4 C5 C6 O6 179.7 180.2
C4 C5 C7 C10 180.2 179.8
C4 C5 C7 C8 0.2 359.7
N3 C4 N9 C5 179.8 180.3
N9 C4 C5 C6 180.3 179.7
N9 C4 C5 C7 359.8 0.4
C7 C8 N9 C4 0.0 0.1
C4 N9 C8 H81 180.0 180.0
C8 N9 C4 HN91 180.0 180.0
C5 C6 N1 H91 180.0 179.7
N1 C6 C5 O6 179.8 180.2
C6 C5 C4 N9 180.3 179.7
C4 C5 C6 C7 179.4 180.9
C6 C5 C7 C10 359.6 0.6
C6 C5 C7 C8 179.6 180.4
C7 C5 C4 N9 359.8 0.4
C4 C5 C7 C6 180.6 179.2
C7 C5 C6 O6 0.4 359.4
C10 C7 C5 C8 180.0 180.2
C5 C7 C10 N11 182.5 179.7
C5 C7 C10 H101 307.8 59.8
C5 C7 C10 H102 57.3 299.8
C5 C7 C8 N9 359.9 0.2
C5 C7 C8 H81 179.9 180.2
O6 C6 N1 H91 359.8 359.9
N1 C6 O6 C5 180.2 179.8
O6 C6 C5 C7 0.4 359.4
C5 C7 C10 C8 180.0 179.8
C10 C7 C8 N9 179.9 180.0
C10 C7 C8 H81 359.9 0.1
N11 C10 C7 H101 234.8 120.0
N11 C10 C7 H102 125.2 240.0
C7 C10 N11 H111 180.0 180.0
C7 C10 N11 H112 54.7 293.8
H101 C10 C7 H102 250.5 120.0
C4 N9 C8 C7 0.0 0.1
C5 C7 C8 C10 180.0 180.2
C8 C7 C10 N11 2.5 359.9
C8 C7 C10 H101 127.8 240.0
C8 C7 C10 H102 237.3 120.0
N9 C8 C7 H81 180.0 179.9
C7 C8 N9 HN91 180.1 180.0
N11 C10 C7 C8 2.5 359.9
C7 C10 N11 H101 125.3 240.1
C7 C10 N11 H102 234.8 120.0
H101 C10 N11 H102 109.5 240.0
H111 N11 C10 H112 125.3 246.3
H101 C10 C7 C8 127.8 240.0
C7 C10 H101 N11 227.4 120.0
C7 C10 H101 H102 113.7 240.0
N11 C10 H101 H102 246.3 120.0
H101 C10 N11 H111 54.7 300.0
H101 C10 N11 H112 289.5 53.7
H102 C10 C7 C8 237.3 120.0
C7 C10 H102 N11 132.6 240.0
C7 C10 H102 H101 246.3 120.0
N11 C10 H102 H101 113.7 240.0
H102 C10 N11 H111 305.2 60.0
H102 C10 N11 H112 179.9 173.7
H111 N11 C10 H101 54.7 300.0
H111 N11 C10 H102 305.2 60.0
C10 N11 H111 H112 234.7 113.8
H112 N11 C10 H101 289.5 53.7
H112 N11 C10 H102 179.9 173.7
C10 N11 H112 H111 132.7 246.2
C4 N9 C8 HN91 180.0 180.0
C7 C8 N9 H81 180.0 180.1
C7 C8 H81 N9 180.0 179.9
H81 C8 N9 HN91 0.0 360.0
C4 N9 HN91 C8 180.0 180.0
HN91 N9 C8 H81 0.0 360.0
C2 N2 HN21 HN22 234.7 180.0
C2 N2 HN22 HN21 130.2 180.0