PDB Chemical Component PRF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PRF
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.389 |
1.363 |
N1 |
C6 |
1.375 |
1.352 |
N1 |
H91 |
1.020 |
0.970 |
C2 |
N3 |
1.300 |
1.313 |
C2 |
N2 |
1.291 |
1.372 |
N3 |
C4 |
1.465 |
1.341 |
C4 |
C5 |
1.335 |
1.400 |
C4 |
N9 |
1.301 |
1.363 |
C5 |
C6 |
1.484 |
1.412 |
C5 |
C7 |
1.471 |
1.462 |
C6 |
O6 |
1.213 |
1.219 |
C7 |
C10 |
1.496 |
1.507 |
C7 |
C8 |
1.323 |
1.343 |
C10 |
N11 |
1.487 |
1.469 |
C10 |
H101 |
1.115 |
1.089 |
C10 |
H102 |
1.114 |
1.090 |
N11 |
H111 |
1.019 |
1.010 |
N11 |
H112 |
1.020 |
1.008 |
C8 |
N9 |
1.292 |
1.373 |
C8 |
H81 |
1.104 |
1.080 |
N9 |
HN91 |
1.021 |
0.971 |
N2 |
HN21 |
1.020 |
0.970 |
N2 |
HN22 |
1.020 |
0.970 |
Bond Angles for PRF
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C6 |
122.3 |
120.2 |
C2 |
N1 |
H91 |
119.4 |
119.9 |
N1 |
C2 |
N3 |
120.5 |
122.1 |
N1 |
C2 |
N2 |
117.9 |
119.0 |
C6 |
N1 |
H91 |
118.3 |
119.9 |
N1 |
C6 |
C5 |
117.6 |
118.2 |
N1 |
C6 |
O6 |
123.7 |
120.9 |
N3 |
C2 |
N2 |
121.6 |
118.9 |
C2 |
N3 |
C4 |
120.8 |
121.2 |
C2 |
N2 |
HN21 |
117.8 |
120.0 |
C2 |
N2 |
HN22 |
109.2 |
120.0 |
N3 |
C4 |
C5 |
120.4 |
119.1 |
N3 |
C4 |
N9 |
129.7 |
133.6 |
C5 |
C4 |
N9 |
109.9 |
107.3 |
C4 |
C5 |
C6 |
118.4 |
119.2 |
C4 |
C5 |
C7 |
103.3 |
106.3 |
C4 |
N9 |
C8 |
111.8 |
110.1 |
C4 |
N9 |
HN91 |
124.4 |
125.0 |
C6 |
C5 |
C7 |
138.2 |
134.5 |
C5 |
C6 |
O6 |
118.7 |
120.9 |
C5 |
C7 |
C10 |
128.2 |
126.7 |
C5 |
C7 |
C8 |
106.1 |
106.7 |
C10 |
C7 |
C8 |
125.7 |
126.6 |
C7 |
C10 |
N11 |
121.0 |
109.4 |
C7 |
C10 |
H101 |
108.1 |
109.4 |
C7 |
C10 |
H102 |
108.1 |
109.5 |
C7 |
C8 |
N9 |
108.9 |
109.6 |
C7 |
C8 |
H81 |
126.5 |
125.2 |
N11 |
C10 |
H101 |
108.1 |
109.5 |
N11 |
C10 |
H102 |
108.1 |
109.5 |
C10 |
N11 |
H111 |
121.1 |
106.7 |
C10 |
N11 |
H112 |
108.1 |
106.8 |
H101 |
C10 |
H102 |
101.9 |
109.5 |
H111 |
N11 |
H112 |
108.1 |
106.6 |
N9 |
C8 |
H81 |
124.6 |
125.2 |
C8 |
N9 |
HN91 |
123.8 |
124.9 |
HN21 |
N2 |
HN22 |
109.2 |
119.9 |
Torsion Angles for PRF
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
N1 |
C2 |
H91 |
180.0 |
179.9 |
C2 |
N1 |
C6 |
C5 |
0.0 |
359.8 |
C2 |
N1 |
C6 |
O6 |
179.8 |
180.0 |
N3 |
C2 |
N1 |
N2 |
180.0 |
179.9 |
N1 |
C2 |
N3 |
C4 |
359.6 |
0.1 |
N1 |
C2 |
N2 |
HN21 |
180.0 |
180.0 |
N1 |
C2 |
N2 |
HN22 |
54.8 |
360.0 |
C2 |
N1 |
C6 |
H91 |
180.0 |
180.1 |
C6 |
N1 |
C2 |
N3 |
0.4 |
359.9 |
C6 |
N1 |
C2 |
N2 |
180.4 |
180.0 |
C4 |
C5 |
C6 |
N1 |
359.6 |
0.5 |
N1 |
C6 |
C5 |
C7 |
180.2 |
179.6 |
C5 |
C6 |
N1 |
O6 |
180.2 |
179.8 |
C2 |
N1 |
H91 |
C6 |
180.0 |
179.9 |
H91 |
N1 |
C2 |
N3 |
180.4 |
180.0 |
H91 |
N1 |
C2 |
N2 |
0.4 |
0.1 |
H91 |
N1 |
C6 |
C5 |
180.0 |
179.7 |
H91 |
N1 |
C6 |
O6 |
359.8 |
359.9 |
N3 |
C2 |
N1 |
C6 |
0.4 |
359.9 |
N3 |
C2 |
N1 |
H91 |
180.4 |
180.0 |
N1 |
C2 |
N3 |
N2 |
180.0 |
180.1 |
N3 |
C2 |
N2 |
HN21 |
0.0 |
0.0 |
N3 |
C2 |
N2 |
HN22 |
234.8 |
180.1 |
C2 |
N3 |
C4 |
C5 |
359.9 |
0.2 |
C2 |
N3 |
C4 |
N9 |
180.2 |
179.9 |
N2 |
C2 |
N1 |
C6 |
180.4 |
180.0 |
N2 |
C2 |
N1 |
H91 |
0.4 |
0.1 |
N1 |
C2 |
N2 |
N3 |
180.0 |
179.9 |
N2 |
C2 |
N3 |
C4 |
179.6 |
180.0 |
HN21 |
N2 |
C2 |
HN22 |
125.3 |
180.0 |
C4 |
N3 |
C2 |
N2 |
179.6 |
180.0 |
C5 |
C4 |
N3 |
N9 |
179.8 |
180.3 |
N3 |
C4 |
C5 |
C6 |
0.5 |
359.5 |
N3 |
C4 |
C5 |
C7 |
180.0 |
180.2 |
N3 |
C4 |
N9 |
C8 |
179.9 |
180.0 |
N3 |
C4 |
N9 |
HN91 |
359.8 |
0.0 |
N1 |
C6 |
C5 |
C4 |
359.6 |
0.5 |
N3 |
C4 |
C5 |
N9 |
180.2 |
179.8 |
C5 |
C4 |
N9 |
C8 |
0.1 |
359.7 |
C5 |
C4 |
N9 |
HN91 |
180.1 |
179.8 |
C6 |
C5 |
C4 |
C7 |
180.4 |
179.4 |
C4 |
C5 |
C6 |
O6 |
179.7 |
180.2 |
C4 |
C5 |
C7 |
C10 |
180.2 |
179.8 |
C4 |
C5 |
C7 |
C8 |
0.2 |
359.7 |
N3 |
C4 |
N9 |
C5 |
179.8 |
180.3 |
N9 |
C4 |
C5 |
C6 |
180.3 |
179.7 |
N9 |
C4 |
C5 |
C7 |
359.8 |
0.4 |
C7 |
C8 |
N9 |
C4 |
0.0 |
0.1 |
C4 |
N9 |
C8 |
H81 |
180.0 |
180.0 |
C8 |
N9 |
C4 |
HN91 |
180.0 |
180.0 |
C5 |
C6 |
N1 |
H91 |
180.0 |
179.7 |
N1 |
C6 |
C5 |
O6 |
179.8 |
180.2 |
C6 |
C5 |
C4 |
N9 |
180.3 |
179.7 |
C4 |
C5 |
C6 |
C7 |
179.4 |
180.9 |
C6 |
C5 |
C7 |
C10 |
359.6 |
0.6 |
C6 |
C5 |
C7 |
C8 |
179.6 |
180.4 |
C7 |
C5 |
C4 |
N9 |
359.8 |
0.4 |
C4 |
C5 |
C7 |
C6 |
180.6 |
179.2 |
C7 |
C5 |
C6 |
O6 |
0.4 |
359.4 |
C10 |
C7 |
C5 |
C8 |
180.0 |
180.2 |
C5 |
C7 |
C10 |
N11 |
182.5 |
179.7 |
C5 |
C7 |
C10 |
H101 |
307.8 |
59.8 |
C5 |
C7 |
C10 |
H102 |
57.3 |
299.8 |
C5 |
C7 |
C8 |
N9 |
359.9 |
0.2 |
C5 |
C7 |
C8 |
H81 |
179.9 |
180.2 |
O6 |
C6 |
N1 |
H91 |
359.8 |
359.9 |
N1 |
C6 |
O6 |
C5 |
180.2 |
179.8 |
O6 |
C6 |
C5 |
C7 |
0.4 |
359.4 |
C5 |
C7 |
C10 |
C8 |
180.0 |
179.8 |
C10 |
C7 |
C8 |
N9 |
179.9 |
180.0 |
C10 |
C7 |
C8 |
H81 |
359.9 |
0.1 |
N11 |
C10 |
C7 |
H101 |
234.8 |
120.0 |
N11 |
C10 |
C7 |
H102 |
125.2 |
240.0 |
C7 |
C10 |
N11 |
H111 |
180.0 |
180.0 |
C7 |
C10 |
N11 |
H112 |
54.7 |
293.8 |
H101 |
C10 |
C7 |
H102 |
250.5 |
120.0 |
C4 |
N9 |
C8 |
C7 |
0.0 |
0.1 |
C5 |
C7 |
C8 |
C10 |
180.0 |
180.2 |
C8 |
C7 |
C10 |
N11 |
2.5 |
359.9 |
C8 |
C7 |
C10 |
H101 |
127.8 |
240.0 |
C8 |
C7 |
C10 |
H102 |
237.3 |
120.0 |
N9 |
C8 |
C7 |
H81 |
180.0 |
179.9 |
C7 |
C8 |
N9 |
HN91 |
180.1 |
180.0 |
N11 |
C10 |
C7 |
C8 |
2.5 |
359.9 |
C7 |
C10 |
N11 |
H101 |
125.3 |
240.1 |
C7 |
C10 |
N11 |
H102 |
234.8 |
120.0 |
H101 |
C10 |
N11 |
H102 |
109.5 |
240.0 |
H111 |
N11 |
C10 |
H112 |
125.3 |
246.3 |
H101 |
C10 |
C7 |
C8 |
127.8 |
240.0 |
C7 |
C10 |
H101 |
N11 |
227.4 |
120.0 |
C7 |
C10 |
H101 |
H102 |
113.7 |
240.0 |
N11 |
C10 |
H101 |
H102 |
246.3 |
120.0 |
H101 |
C10 |
N11 |
H111 |
54.7 |
300.0 |
H101 |
C10 |
N11 |
H112 |
289.5 |
53.7 |
H102 |
C10 |
C7 |
C8 |
237.3 |
120.0 |
C7 |
C10 |
H102 |
N11 |
132.6 |
240.0 |
C7 |
C10 |
H102 |
H101 |
246.3 |
120.0 |
N11 |
C10 |
H102 |
H101 |
113.7 |
240.0 |
H102 |
C10 |
N11 |
H111 |
305.2 |
60.0 |
H102 |
C10 |
N11 |
H112 |
179.9 |
173.7 |
H111 |
N11 |
C10 |
H101 |
54.7 |
300.0 |
H111 |
N11 |
C10 |
H102 |
305.2 |
60.0 |
C10 |
N11 |
H111 |
H112 |
234.7 |
113.8 |
H112 |
N11 |
C10 |
H101 |
289.5 |
53.7 |
H112 |
N11 |
C10 |
H102 |
179.9 |
173.7 |
C10 |
N11 |
H112 |
H111 |
132.7 |
246.2 |
C4 |
N9 |
C8 |
HN91 |
180.0 |
180.0 |
C7 |
C8 |
N9 |
H81 |
180.0 |
180.1 |
C7 |
C8 |
H81 |
N9 |
180.0 |
179.9 |
H81 |
C8 |
N9 |
HN91 |
0.0 |
360.0 |
C4 |
N9 |
HN91 |
C8 |
180.0 |
180.0 |
HN91 |
N9 |
C8 |
H81 |
0.0 |
360.0 |
C2 |
N2 |
HN21 |
HN22 |
234.7 |
180.0 |
C2 |
N2 |
HN22 |
HN21 |
130.2 |
180.0 |