PDB Chemical Component PRA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PRA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.488 |
1.531 |
| C1 |
N |
1.462 |
1.468 |
| C1 |
H11 |
1.100 |
1.090 |
| C1 |
H12 |
1.100 |
1.090 |
| C2 |
C3 |
1.487 |
1.530 |
| C2 |
H21 |
1.100 |
1.090 |
| C2 |
H22 |
1.100 |
1.089 |
| C3 |
C1' |
1.498 |
1.506 |
| C3 |
H31 |
1.100 |
1.090 |
| C3 |
H32 |
1.100 |
1.090 |
| C1' |
C2' |
1.385 |
1.382 |
| C1' |
C6' |
1.385 |
1.383 |
| C2' |
C3' |
1.381 |
1.383 |
| C2' |
H2' |
1.080 |
1.080 |
| C3' |
C4' |
1.382 |
1.382 |
| C3' |
H3' |
1.081 |
1.080 |
| C4' |
C5' |
1.387 |
1.382 |
| C4' |
H4' |
1.080 |
1.079 |
| C5' |
C6' |
1.382 |
1.382 |
| C5' |
H5' |
1.080 |
1.081 |
| C6' |
H6' |
1.080 |
1.080 |
| N |
HN1 |
1.001 |
1.010 |
| N |
HN2 |
1.000 |
1.009 |
Bond Angles for PRA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
N |
117.8 |
109.5 |
| C2 |
C1 |
H11 |
107.4 |
109.4 |
| C2 |
C1 |
H12 |
107.3 |
109.4 |
| C1 |
C2 |
C3 |
102.7 |
109.5 |
| C1 |
C2 |
H21 |
111.2 |
109.4 |
| C1 |
C2 |
H22 |
111.1 |
109.5 |
| N |
C1 |
H11 |
107.3 |
109.5 |
| N |
C1 |
H12 |
107.4 |
109.5 |
| C1 |
N |
HN1 |
109.5 |
111.0 |
| C1 |
N |
HN2 |
109.4 |
111.0 |
| H11 |
C1 |
H12 |
109.5 |
109.5 |
| C3 |
C2 |
H21 |
111.1 |
109.5 |
| C3 |
C2 |
H22 |
111.2 |
109.5 |
| C2 |
C3 |
C1' |
113.2 |
109.5 |
| C2 |
C3 |
H31 |
108.5 |
109.5 |
| C2 |
C3 |
H32 |
108.5 |
109.4 |
| H21 |
C2 |
H22 |
109.5 |
109.5 |
| C1' |
C3 |
H31 |
108.5 |
109.5 |
| C1' |
C3 |
H32 |
108.5 |
109.5 |
| C3 |
C1' |
C2' |
115.6 |
120.0 |
| C3 |
C1' |
C6' |
116.7 |
120.0 |
| H31 |
C3 |
H32 |
109.5 |
109.4 |
| C2' |
C1' |
C6' |
120.5 |
120.0 |
| C1' |
C2' |
C3' |
119.8 |
120.0 |
| C1' |
C2' |
H2' |
120.1 |
120.0 |
| C1' |
C6' |
C5' |
119.4 |
120.0 |
| C1' |
C6' |
H6' |
120.3 |
120.0 |
| C3' |
C2' |
H2' |
120.1 |
120.0 |
| C2' |
C3' |
C4' |
120.0 |
120.0 |
| C2' |
C3' |
H3' |
120.0 |
120.0 |
| C4' |
C3' |
H3' |
120.0 |
120.0 |
| C3' |
C4' |
C5' |
120.1 |
120.0 |
| C3' |
C4' |
H4' |
120.0 |
120.0 |
| C5' |
C4' |
H4' |
119.9 |
120.1 |
| C4' |
C5' |
C6' |
120.2 |
120.0 |
| C4' |
C5' |
H5' |
119.9 |
120.0 |
| C6' |
C5' |
H5' |
119.9 |
120.0 |
| C5' |
C6' |
H6' |
120.3 |
120.0 |
| HN1 |
N |
HN2 |
109.5 |
111.0 |
Torsion Angles for PRA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
C1 |
C2 |
H11 |
238.8 |
240.0 |
| N |
C1 |
C2 |
H12 |
121.2 |
120.0 |
| C2 |
C1 |
N |
HN1 |
180.0 |
180.0 |
| C2 |
C1 |
N |
HN2 |
300.0 |
303.9 |
| H11 |
C1 |
C2 |
H12 |
242.4 |
240.0 |
| C3 |
C2 |
C1 |
H21 |
241.1 |
240.0 |
| C3 |
C2 |
C1 |
H22 |
118.9 |
120.0 |
| C1 |
C2 |
C3 |
C1' |
199.8 |
180.0 |
| C1 |
C2 |
C3 |
H31 |
320.4 |
300.1 |
| C1 |
C2 |
C3 |
H32 |
79.3 |
60.0 |
| H21 |
C2 |
C1 |
H22 |
237.8 |
240.0 |
| C2 |
C1 |
N |
H11 |
121.2 |
120.0 |
| C2 |
C1 |
N |
H12 |
238.8 |
240.0 |
| N |
C1 |
C2 |
C3 |
294.3 |
180.0 |
| N |
C1 |
C2 |
H21 |
53.3 |
300.0 |
| N |
C1 |
C2 |
H22 |
175.4 |
60.0 |
| H11 |
C1 |
N |
H12 |
117.6 |
120.1 |
| HN1 |
N |
C1 |
HN2 |
240.0 |
236.0 |
| C2 |
C1 |
H11 |
N |
232.5 |
240.0 |
| C2 |
C1 |
H11 |
H12 |
116.2 |
120.0 |
| H11 |
C1 |
C2 |
C3 |
55.5 |
300.0 |
| H11 |
C1 |
C2 |
H21 |
174.4 |
60.0 |
| H11 |
C1 |
C2 |
H22 |
296.6 |
180.0 |
| N |
C1 |
H11 |
H12 |
243.8 |
239.9 |
| H11 |
C1 |
N |
HN1 |
58.8 |
60.0 |
| H11 |
C1 |
N |
HN2 |
178.8 |
184.0 |
| C2 |
C1 |
H12 |
N |
127.5 |
120.0 |
| C2 |
C1 |
H12 |
H11 |
243.8 |
240.0 |
| H12 |
C1 |
C2 |
C3 |
173.2 |
60.0 |
| H12 |
C1 |
C2 |
H21 |
292.1 |
180.0 |
| H12 |
C1 |
C2 |
H22 |
54.2 |
300.0 |
| N |
C1 |
H12 |
H11 |
116.2 |
120.1 |
| H12 |
C1 |
N |
HN1 |
301.2 |
300.0 |
| H12 |
C1 |
N |
HN2 |
61.2 |
63.9 |
| C3 |
C2 |
C1 |
N |
294.3 |
180.0 |
| C3 |
C2 |
C1 |
H11 |
55.5 |
300.0 |
| C3 |
C2 |
C1 |
H12 |
173.2 |
60.0 |
| C1 |
C2 |
C3 |
H21 |
118.9 |
120.0 |
| C1 |
C2 |
C3 |
H22 |
241.1 |
240.0 |
| H21 |
C2 |
C3 |
H22 |
122.2 |
120.0 |
| C1' |
C3 |
C2 |
H31 |
239.5 |
239.9 |
| C1' |
C3 |
C2 |
H32 |
120.6 |
120.0 |
| C2 |
C3 |
C1' |
C2' |
213.4 |
90.0 |
| C2 |
C3 |
C1' |
C6' |
62.8 |
269.7 |
| H31 |
C3 |
C2 |
H32 |
241.1 |
240.1 |
| H21 |
C2 |
C1 |
N |
53.3 |
300.0 |
| H21 |
C2 |
C1 |
H11 |
174.4 |
60.0 |
| H21 |
C2 |
C1 |
H12 |
292.1 |
180.0 |
| C1 |
C2 |
H21 |
C3 |
246.3 |
240.0 |
| C1 |
C2 |
H21 |
H22 |
123.1 |
120.0 |
| C3 |
C2 |
H21 |
H22 |
236.8 |
240.0 |
| H21 |
C2 |
C3 |
C1' |
80.9 |
60.0 |
| H21 |
C2 |
C3 |
H31 |
201.5 |
180.1 |
| H21 |
C2 |
C3 |
H32 |
320.4 |
300.0 |
| H22 |
C2 |
C1 |
N |
175.4 |
60.0 |
| H22 |
C2 |
C1 |
H11 |
296.6 |
180.0 |
| H22 |
C2 |
C1 |
H12 |
54.2 |
300.0 |
| C1 |
C2 |
H22 |
C3 |
113.7 |
120.0 |
| C1 |
C2 |
H22 |
H21 |
236.9 |
240.1 |
| C3 |
C2 |
H22 |
H21 |
123.2 |
120.0 |
| H22 |
C2 |
C3 |
C1' |
318.7 |
300.0 |
| H22 |
C2 |
C3 |
H31 |
79.3 |
60.1 |
| H22 |
C2 |
C3 |
H32 |
198.2 |
180.0 |
| C1' |
C3 |
C2 |
H21 |
80.9 |
60.0 |
| C1' |
C3 |
C2 |
H22 |
318.7 |
300.0 |
| C2 |
C3 |
C1' |
H31 |
120.6 |
120.0 |
| C2 |
C3 |
C1' |
H32 |
239.4 |
240.0 |
| H31 |
C3 |
C1' |
H32 |
118.9 |
120.0 |
| C2' |
C1' |
C3 |
C6' |
150.5 |
180.3 |
| C3 |
C1' |
C2' |
C3' |
211.4 |
180.0 |
| C3 |
C1' |
C2' |
H2' |
31.4 |
360.0 |
| C3 |
C1' |
C6' |
C5' |
148.3 |
179.8 |
| C3 |
C1' |
C6' |
H6' |
328.3 |
360.0 |
| H31 |
C3 |
C2 |
H21 |
201.5 |
180.1 |
| H31 |
C3 |
C2 |
H22 |
79.3 |
60.1 |
| C2 |
C3 |
H31 |
C1' |
236.6 |
240.0 |
| C2 |
C3 |
H31 |
H32 |
118.3 |
119.9 |
| C1' |
C3 |
H31 |
H32 |
241.7 |
240.0 |
| H31 |
C3 |
C1' |
C2' |
92.8 |
330.0 |
| H31 |
C3 |
C1' |
C6' |
302.3 |
149.7 |
| H32 |
C3 |
C2 |
H21 |
320.4 |
300.0 |
| H32 |
C3 |
C2 |
H22 |
198.2 |
180.0 |
| C2 |
C3 |
H32 |
C1' |
123.5 |
120.0 |
| C2 |
C3 |
H32 |
H31 |
241.7 |
240.0 |
| C1' |
C3 |
H32 |
H31 |
118.2 |
120.0 |
| H32 |
C3 |
C1' |
C2' |
333.9 |
210.0 |
| H32 |
C3 |
C1' |
C6' |
183.4 |
29.7 |
| C2' |
C1' |
C3 |
H31 |
92.8 |
330.0 |
| C2' |
C1' |
C3 |
H32 |
333.9 |
210.0 |
| C3 |
C1' |
C2' |
C6' |
210.7 |
179.7 |
| C2' |
C1' |
C6' |
C5' |
359.3 |
359.5 |
| C2' |
C1' |
C6' |
H6' |
179.3 |
179.7 |
| C3' |
C2' |
C1' |
H2' |
180.0 |
180.0 |
| C1' |
C2' |
C3' |
C4' |
359.8 |
0.0 |
| C1' |
C2' |
C3' |
H3' |
179.8 |
179.9 |
| C6' |
C1' |
C3 |
H31 |
302.3 |
149.7 |
| C6' |
C1' |
C3 |
H32 |
183.4 |
29.7 |
| C3 |
C1' |
C6' |
C2' |
149.0 |
180.3 |
| C6' |
C1' |
C2' |
C3' |
0.7 |
0.3 |
| C6' |
C1' |
C2' |
H2' |
180.7 |
180.2 |
| C4' |
C5' |
C6' |
C1' |
0.2 |
0.4 |
| C1' |
C6' |
C5' |
H5' |
180.2 |
180.2 |
| C5' |
C6' |
C1' |
H6' |
180.0 |
179.8 |
| C3' |
C2' |
C1' |
C6' |
0.7 |
0.3 |
| C1' |
C2' |
C3' |
H2' |
180.0 |
180.0 |
| C4' |
C3' |
C2' |
H3' |
180.0 |
180.1 |
| C2' |
C3' |
C4' |
C5' |
359.7 |
360.0 |
| C2' |
C3' |
C4' |
H4' |
179.7 |
180.0 |
| H2' |
C2' |
C1' |
C6' |
180.7 |
180.2 |
| C1' |
C2' |
H2' |
C3' |
180.0 |
180.0 |
| H2' |
C2' |
C3' |
C4' |
179.8 |
180.0 |
| H2' |
C2' |
C3' |
H3' |
359.8 |
359.9 |
| C4' |
C3' |
C2' |
H2' |
179.8 |
180.0 |
| C2' |
C3' |
C4' |
H3' |
180.0 |
179.9 |
| C5' |
C4' |
C3' |
H4' |
180.0 |
180.0 |
| C3' |
C4' |
C5' |
C6' |
0.3 |
359.8 |
| C3' |
C4' |
C5' |
H5' |
180.3 |
180.0 |
| H3' |
C3' |
C2' |
H2' |
359.8 |
359.9 |
| C2' |
C3' |
H3' |
C4' |
180.0 |
180.1 |
| H3' |
C3' |
C4' |
C5' |
179.7 |
180.1 |
| H3' |
C3' |
C4' |
H4' |
359.7 |
0.1 |
| C1' |
C6' |
C5' |
C4' |
0.2 |
0.4 |
| C5' |
C4' |
C3' |
H3' |
179.7 |
180.1 |
| C3' |
C4' |
C5' |
H4' |
180.0 |
180.0 |
| C6' |
C5' |
C4' |
H5' |
180.0 |
179.8 |
| C4' |
C5' |
C6' |
H6' |
180.2 |
180.3 |
| H4' |
C4' |
C3' |
H3' |
359.7 |
0.1 |
| C3' |
C4' |
H4' |
C5' |
180.0 |
180.0 |
| H4' |
C4' |
C5' |
C6' |
180.3 |
179.8 |
| H4' |
C4' |
C5' |
H5' |
0.3 |
0.0 |
| C1' |
C6' |
C5' |
H6' |
180.0 |
180.2 |
| C6' |
C5' |
C4' |
H4' |
180.3 |
179.8 |
| C4' |
C5' |
C6' |
H5' |
180.0 |
180.2 |
| H5' |
C5' |
C4' |
H4' |
0.3 |
0.0 |
| C4' |
C5' |
H5' |
C6' |
180.0 |
179.8 |
| H5' |
C5' |
C6' |
H6' |
0.2 |
0.1 |
| C1' |
C6' |
H6' |
C5' |
180.0 |
179.8 |
| H6' |
C6' |
C5' |
H5' |
0.2 |
0.1 |
| HN1 |
N |
C1 |
H11 |
58.8 |
60.0 |
| HN1 |
N |
C1 |
H12 |
301.2 |
300.0 |
| C1 |
N |
HN1 |
HN2 |
120.0 |
124.0 |
| HN2 |
N |
C1 |
H11 |
178.8 |
184.0 |
| HN2 |
N |
C1 |
H12 |
61.2 |
63.9 |
| C1 |
N |
HN2 |
HN1 |
240.0 |
236.0 |