PDB Chemical Component PQQ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PQQ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.363  
N1 C1A 1.376  
N1 HN1 1.020  
C2 C2X 1.403  
C2 C3 1.373  
C2X O2A 1.242  
C2X O2B 1.214  
O2B HOB2 0.951  
C3 C3A 1.359  
C3 H3 1.104  
C3A C1A 1.372  
C3A C4 1.381  
C1A C9A 1.433  
C4 O4 1.377  
C4 C5 1.479  
C5 O5 1.378  
C5 C6A 1.509  
C6A N6 1.355  
C6A C9A 1.407  
N6 C7 1.317  
C7 C7X 1.418  
C7 C8 1.390  
C7X O7A 1.268  
C7X O7B 1.256  
O7B HOB7 0.949  
C8 C9 1.415  
C8 H8 1.103  
C9 C9X 1.420  
C9 C9A 1.373  
C9X O9A 1.244  
C9X O9B 1.193  
O9B HOB9 0.950  

Bond Angles for PQQ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C1A 104.9  
C2 N1 HN1 127.1  
N1 C2 C2X 116.6  
N1 C2 C3 110.9  
C1A N1 HN1 128.0  
N1 C1A C3A 109.7  
N1 C1A C9A 127.4  
C2X C2 C3 132.5  
C2 C2X O2A 116.1  
C2 C2X O2B 119.7  
C2 C3 C3A 106.5  
C2 C3 H3 127.1  
O2A C2X O2B 124.2  
C2X O2B HOB2 119.7  
C3A C3 H3 126.4  
C3 C3A C1A 107.9  
C3 C3A C4 131.3  
C1A C3A C4 120.7  
C3A C1A C9A 122.6  
C3A C4 O4 123.9  
C3A C4 C5 121.5  
C1A C9A C6A 116.2  
C1A C9A C9 129.7  
O4 C4 C5 114.4  
C4 C5 O5 112.4  
C4 C5 C6A 110.2  
O5 C5 C6A 111.8  
C5 C6A N6 108.7  
C5 C6A C9A 123.0  
N6 C6A C9A 128.0  
C6A N6 C7 115.8  
C6A C9A C9 114.1  
N6 C7 C7X 115.5  
N6 C7 C8 121.9  
C7X C7 C8 121.7  
C7 C7X O7A 121.6  
C7 C7X O7B 121.1  
C7 C8 C9 120.6  
C7 C8 H8 118.8  
O7A C7X O7B 117.1  
C7X O7B HOB7 121.2  
C9 C8 H8 120.6  
C8 C9 C9X 115.8  
C8 C9 C9A 119.4  
C9X C9 C9A 124.7  
C9 C9X O9A 119.3  
C9 C9X O9B 122.7  
O9A C9X O9B 118.0  
C9X O9B HOB9 122.7  

Torsion Angles for PQQ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C1A N1 C2 HN1 180.0  
C2 N1 C1A C3A 0.6  
C2 N1 C1A C9A 174.5  
C2X C2 N1 C3 179.9  
N1 C2 C2X O2A 343.7  
N1 C2 C2X O2B 163.6  
N1 C2 C3 C3A 358.0  
N1 C2 C3 H3 178.0  
C2 N1 C1A HN1 180.0  
C1A N1 C2 C2X 180.8  
C1A N1 C2 C3 0.9  
C3 C3A C1A N1 358.2  
N1 C1A C3A C4 176.0  
C3A C1A N1 C9A 186.1  
N1 C1A C9A C6A 183.5  
N1 C1A C9A C9 4.1  
C2 N1 HN1 C1A 180.0  
HN1 N1 C2 C2X 0.8  
HN1 N1 C2 C3 180.9  
HN1 N1 C1A C3A 180.6  
HN1 N1 C1A C9A 354.5  
C2X C2 N1 C1A 180.8  
C2X C2 N1 HN1 0.8  
N1 C2 C2X C3 180.1  
C2X C2 C3 C3A 178.1  
C2X C2 C3 H3 358.1  
O2A C2X C2 O2B 180.0  
C2 C2X O2B HOB2 179.9  
C3 C2 N1 C1A 0.9  
C3 C2 N1 HN1 180.9  
N1 C2 C3 C2X 179.9  
C3 C2 C2X O2A 163.6  
C3 C2 C2X O2B 343.6  
C3A C3 C2 H3 180.0  
C2 C3 C3A C1A 2.3  
C2 C3 C3A C4 184.7  
O2A C2X C2 C3 163.6  
C2 C2X O2A O2B 180.0  
O2A C2X O2B HOB2 359.9  
O2B C2X C2 C3 343.6  
C2 C2X O2B O2A 180.0  
N1 C1A C3A C3 358.2  
C2 C3 C3A H3 180.0  
C1A C3A C3 C4 177.6  
C3 C3A C1A C9A 183.9  
C3 C3A C4 O4 7.1  
C3 C3A C4 C5 192.4  
C2 C3 H3 C3A 180.0  
H3 C3 C3A C1A 182.3  
H3 C3 C3A C4 4.7  
C3A C1A N1 HN1 180.6  
N1 C1A C3A C9A 174.2  
C1A C3A C3 H3 182.3  
C3 C3A C1A C4 182.1  
C1A C3A C4 O4 189.8  
C1A C3A C4 C5 15.1  
C3A C1A C9A C6A 356.7  
C3A C1A C9A C9 177.2  
C4 C3A C3 H3 4.7  
C3 C3A C4 C1A 177.3  
C4 C3A C1A C9A 1.8  
O4 C4 C3A C5 174.7  
C3A C4 C5 O5 207.6  
C3A C4 C5 C6A 333.1  
C9A C1A N1 HN1 354.5  
N1 C1A C9A C3A 186.9  
C9A C1A C3A C4 1.8  
C5 C6A C9A C1A 348.2  
N6 C6A C9A C1A 176.1  
C6A C9A C1A C9 179.5  
C8 C9 C9A C1A 182.5  
C9X C9 C9A C1A 359.0  
C3A C4 O4 C5 185.0  
O4 C4 C5 O5 32.4  
O4 C4 C5 C6A 157.9  
C3A C4 C5 O4 175.2  
O5 C5 C4 C6A 234.5  
C4 C5 C6A N6 199.1  
C4 C5 C6A C9A 25.6  
C4 C5 O5 C6A 124.6  
O5 C5 C6A N6 324.9  
O5 C5 C6A C9A 151.5  
C1A C9A C6A C5 348.2  
C4 C5 C6A O5 234.1  
N6 C6A C5 C9A 173.4  
C5 C6A N6 C7 192.0  
C5 C6A C9A C9 167.7  
C1A C9A C6A N6 176.1  
C5 C6A N6 C9A 187.0  
N6 C6A C9A C9 355.6  
C6A N6 C7 C7X 186.3  
C6A N6 C7 C8 355.6  
C1A C9A C6A C9 180.5  
C5 C6A C9A N6 172.1  
C9A C6A N6 C7 5.0  
C8 C9 C9A C6A 3.0  
C9X C9 C9A C6A 179.5  
C7 N6 C6A C9A 5.0  
C7X C7 N6 C8 190.7  
N6 C7 C7X O7A 2.6  
N6 C7 C7X O7B 178.7  
N6 C7 C8 C9 3.6  
N6 C7 C8 H8 183.6  
N6 C7 C7X C8 169.4  
C7X C7 C8 C9 172.3  
C7X C7 C8 H8 352.3  
O7A C7X C7 O7B 183.9  
C7 C7X O7B HOB7 180.0  
N6 C7 C8 C7X 191.3  
C8 C7 C7X O7A 193.2  
C8 C7 C7X O7B 9.3  
C9 C8 C7 H8 180.0  
C7 C8 C9 C9X 180.3  
C7 C8 C9 C9A 357.1  
O7A C7X C7 C8 193.2  
C7 C7X O7A O7B 176.3  
O7A C7X O7B HOB7 356.3  
O7B C7X C7 C8 9.3  
C7 C7X O7B O7A 183.7  
C1A C9A C9 C8 182.5  
C6A C9A C9 C8 3.0  
C7 C8 C9 H8 180.0  
C9X C9 C8 C9A 183.2  
C8 C9 C9X O9A 6.9  
C8 C9 C9X O9B 188.8  
C7 C8 H8 C9 180.0  
H8 C8 C9 C9X 0.3  
H8 C8 C9 C9A 177.1  
C1A C9A C9 C9X 359.0  
C6A C9A C9 C9X 179.5  
C9X C9 C8 H8 0.3  
C8 C9 C9X C9A 176.6  
O9A C9X C9 O9B 178.1  
C9 C9X O9B HOB9 180.0  
C1A C9A C9 C6A 179.5  
C9A C9 C8 H8 177.1  
C8 C9 C9A C9X 183.5  
C9A C9 C9X O9A 190.2  
C9A C9 C9X O9B 12.2  
O9A C9X C9 C9A 190.2  
C9 C9X O9A O9B 181.8  
O9A C9X O9B HOB9 1.9  
O9B C9X C9 C9A 12.2  
C9 C9X O9B O9A 178.1