PDB Chemical Component PQQ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PQQ
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.363 |
|
N1 |
C1A |
1.376 |
|
N1 |
HN1 |
1.020 |
|
C2 |
C2X |
1.403 |
|
C2 |
C3 |
1.373 |
|
C2X |
O2A |
1.242 |
|
C2X |
O2B |
1.214 |
|
O2B |
HOB2 |
0.951 |
|
C3 |
C3A |
1.359 |
|
C3 |
H3 |
1.104 |
|
C3A |
C1A |
1.372 |
|
C3A |
C4 |
1.381 |
|
C1A |
C9A |
1.433 |
|
C4 |
O4 |
1.377 |
|
C4 |
C5 |
1.479 |
|
C5 |
O5 |
1.378 |
|
C5 |
C6A |
1.509 |
|
C6A |
N6 |
1.355 |
|
C6A |
C9A |
1.407 |
|
N6 |
C7 |
1.317 |
|
C7 |
C7X |
1.418 |
|
C7 |
C8 |
1.390 |
|
C7X |
O7A |
1.268 |
|
C7X |
O7B |
1.256 |
|
O7B |
HOB7 |
0.949 |
|
C8 |
C9 |
1.415 |
|
C8 |
H8 |
1.103 |
|
C9 |
C9X |
1.420 |
|
C9 |
C9A |
1.373 |
|
C9X |
O9A |
1.244 |
|
C9X |
O9B |
1.193 |
|
O9B |
HOB9 |
0.950 |
|
Bond Angles for PQQ
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C1A |
104.9 |
|
C2 |
N1 |
HN1 |
127.1 |
|
N1 |
C2 |
C2X |
116.6 |
|
N1 |
C2 |
C3 |
110.9 |
|
C1A |
N1 |
HN1 |
128.0 |
|
N1 |
C1A |
C3A |
109.7 |
|
N1 |
C1A |
C9A |
127.4 |
|
C2X |
C2 |
C3 |
132.5 |
|
C2 |
C2X |
O2A |
116.1 |
|
C2 |
C2X |
O2B |
119.7 |
|
C2 |
C3 |
C3A |
106.5 |
|
C2 |
C3 |
H3 |
127.1 |
|
O2A |
C2X |
O2B |
124.2 |
|
C2X |
O2B |
HOB2 |
119.7 |
|
C3A |
C3 |
H3 |
126.4 |
|
C3 |
C3A |
C1A |
107.9 |
|
C3 |
C3A |
C4 |
131.3 |
|
C1A |
C3A |
C4 |
120.7 |
|
C3A |
C1A |
C9A |
122.6 |
|
C3A |
C4 |
O4 |
123.9 |
|
C3A |
C4 |
C5 |
121.5 |
|
C1A |
C9A |
C6A |
116.2 |
|
C1A |
C9A |
C9 |
129.7 |
|
O4 |
C4 |
C5 |
114.4 |
|
C4 |
C5 |
O5 |
112.4 |
|
C4 |
C5 |
C6A |
110.2 |
|
O5 |
C5 |
C6A |
111.8 |
|
C5 |
C6A |
N6 |
108.7 |
|
C5 |
C6A |
C9A |
123.0 |
|
N6 |
C6A |
C9A |
128.0 |
|
C6A |
N6 |
C7 |
115.8 |
|
C6A |
C9A |
C9 |
114.1 |
|
N6 |
C7 |
C7X |
115.5 |
|
N6 |
C7 |
C8 |
121.9 |
|
C7X |
C7 |
C8 |
121.7 |
|
C7 |
C7X |
O7A |
121.6 |
|
C7 |
C7X |
O7B |
121.1 |
|
C7 |
C8 |
C9 |
120.6 |
|
C7 |
C8 |
H8 |
118.8 |
|
O7A |
C7X |
O7B |
117.1 |
|
C7X |
O7B |
HOB7 |
121.2 |
|
C9 |
C8 |
H8 |
120.6 |
|
C8 |
C9 |
C9X |
115.8 |
|
C8 |
C9 |
C9A |
119.4 |
|
C9X |
C9 |
C9A |
124.7 |
|
C9 |
C9X |
O9A |
119.3 |
|
C9 |
C9X |
O9B |
122.7 |
|
O9A |
C9X |
O9B |
118.0 |
|
C9X |
O9B |
HOB9 |
122.7 |
|
Torsion Angles for PQQ
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1A |
N1 |
C2 |
HN1 |
180.0 |
|
C2 |
N1 |
C1A |
C3A |
0.6 |
|
C2 |
N1 |
C1A |
C9A |
174.5 |
|
C2X |
C2 |
N1 |
C3 |
179.9 |
|
N1 |
C2 |
C2X |
O2A |
343.7 |
|
N1 |
C2 |
C2X |
O2B |
163.6 |
|
N1 |
C2 |
C3 |
C3A |
358.0 |
|
N1 |
C2 |
C3 |
H3 |
178.0 |
|
C2 |
N1 |
C1A |
HN1 |
180.0 |
|
C1A |
N1 |
C2 |
C2X |
180.8 |
|
C1A |
N1 |
C2 |
C3 |
0.9 |
|
C3 |
C3A |
C1A |
N1 |
358.2 |
|
N1 |
C1A |
C3A |
C4 |
176.0 |
|
C3A |
C1A |
N1 |
C9A |
186.1 |
|
N1 |
C1A |
C9A |
C6A |
183.5 |
|
N1 |
C1A |
C9A |
C9 |
4.1 |
|
C2 |
N1 |
HN1 |
C1A |
180.0 |
|
HN1 |
N1 |
C2 |
C2X |
0.8 |
|
HN1 |
N1 |
C2 |
C3 |
180.9 |
|
HN1 |
N1 |
C1A |
C3A |
180.6 |
|
HN1 |
N1 |
C1A |
C9A |
354.5 |
|
C2X |
C2 |
N1 |
C1A |
180.8 |
|
C2X |
C2 |
N1 |
HN1 |
0.8 |
|
N1 |
C2 |
C2X |
C3 |
180.1 |
|
C2X |
C2 |
C3 |
C3A |
178.1 |
|
C2X |
C2 |
C3 |
H3 |
358.1 |
|
O2A |
C2X |
C2 |
O2B |
180.0 |
|
C2 |
C2X |
O2B |
HOB2 |
179.9 |
|
C3 |
C2 |
N1 |
C1A |
0.9 |
|
C3 |
C2 |
N1 |
HN1 |
180.9 |
|
N1 |
C2 |
C3 |
C2X |
179.9 |
|
C3 |
C2 |
C2X |
O2A |
163.6 |
|
C3 |
C2 |
C2X |
O2B |
343.6 |
|
C3A |
C3 |
C2 |
H3 |
180.0 |
|
C2 |
C3 |
C3A |
C1A |
2.3 |
|
C2 |
C3 |
C3A |
C4 |
184.7 |
|
O2A |
C2X |
C2 |
C3 |
163.6 |
|
C2 |
C2X |
O2A |
O2B |
180.0 |
|
O2A |
C2X |
O2B |
HOB2 |
359.9 |
|
O2B |
C2X |
C2 |
C3 |
343.6 |
|
C2 |
C2X |
O2B |
O2A |
180.0 |
|
N1 |
C1A |
C3A |
C3 |
358.2 |
|
C2 |
C3 |
C3A |
H3 |
180.0 |
|
C1A |
C3A |
C3 |
C4 |
177.6 |
|
C3 |
C3A |
C1A |
C9A |
183.9 |
|
C3 |
C3A |
C4 |
O4 |
7.1 |
|
C3 |
C3A |
C4 |
C5 |
192.4 |
|
C2 |
C3 |
H3 |
C3A |
180.0 |
|
H3 |
C3 |
C3A |
C1A |
182.3 |
|
H3 |
C3 |
C3A |
C4 |
4.7 |
|
C3A |
C1A |
N1 |
HN1 |
180.6 |
|
N1 |
C1A |
C3A |
C9A |
174.2 |
|
C1A |
C3A |
C3 |
H3 |
182.3 |
|
C3 |
C3A |
C1A |
C4 |
182.1 |
|
C1A |
C3A |
C4 |
O4 |
189.8 |
|
C1A |
C3A |
C4 |
C5 |
15.1 |
|
C3A |
C1A |
C9A |
C6A |
356.7 |
|
C3A |
C1A |
C9A |
C9 |
177.2 |
|
C4 |
C3A |
C3 |
H3 |
4.7 |
|
C3 |
C3A |
C4 |
C1A |
177.3 |
|
C4 |
C3A |
C1A |
C9A |
1.8 |
|
O4 |
C4 |
C3A |
C5 |
174.7 |
|
C3A |
C4 |
C5 |
O5 |
207.6 |
|
C3A |
C4 |
C5 |
C6A |
333.1 |
|
C9A |
C1A |
N1 |
HN1 |
354.5 |
|
N1 |
C1A |
C9A |
C3A |
186.9 |
|
C9A |
C1A |
C3A |
C4 |
1.8 |
|
C5 |
C6A |
C9A |
C1A |
348.2 |
|
N6 |
C6A |
C9A |
C1A |
176.1 |
|
C6A |
C9A |
C1A |
C9 |
179.5 |
|
C8 |
C9 |
C9A |
C1A |
182.5 |
|
C9X |
C9 |
C9A |
C1A |
359.0 |
|
C3A |
C4 |
O4 |
C5 |
185.0 |
|
O4 |
C4 |
C5 |
O5 |
32.4 |
|
O4 |
C4 |
C5 |
C6A |
157.9 |
|
C3A |
C4 |
C5 |
O4 |
175.2 |
|
O5 |
C5 |
C4 |
C6A |
234.5 |
|
C4 |
C5 |
C6A |
N6 |
199.1 |
|
C4 |
C5 |
C6A |
C9A |
25.6 |
|
C4 |
C5 |
O5 |
C6A |
124.6 |
|
O5 |
C5 |
C6A |
N6 |
324.9 |
|
O5 |
C5 |
C6A |
C9A |
151.5 |
|
C1A |
C9A |
C6A |
C5 |
348.2 |
|
C4 |
C5 |
C6A |
O5 |
234.1 |
|
N6 |
C6A |
C5 |
C9A |
173.4 |
|
C5 |
C6A |
N6 |
C7 |
192.0 |
|
C5 |
C6A |
C9A |
C9 |
167.7 |
|
C1A |
C9A |
C6A |
N6 |
176.1 |
|
C5 |
C6A |
N6 |
C9A |
187.0 |
|
N6 |
C6A |
C9A |
C9 |
355.6 |
|
C6A |
N6 |
C7 |
C7X |
186.3 |
|
C6A |
N6 |
C7 |
C8 |
355.6 |
|
C1A |
C9A |
C6A |
C9 |
180.5 |
|
C5 |
C6A |
C9A |
N6 |
172.1 |
|
C9A |
C6A |
N6 |
C7 |
5.0 |
|
C8 |
C9 |
C9A |
C6A |
3.0 |
|
C9X |
C9 |
C9A |
C6A |
179.5 |
|
C7 |
N6 |
C6A |
C9A |
5.0 |
|
C7X |
C7 |
N6 |
C8 |
190.7 |
|
N6 |
C7 |
C7X |
O7A |
2.6 |
|
N6 |
C7 |
C7X |
O7B |
178.7 |
|
N6 |
C7 |
C8 |
C9 |
3.6 |
|
N6 |
C7 |
C8 |
H8 |
183.6 |
|
N6 |
C7 |
C7X |
C8 |
169.4 |
|
C7X |
C7 |
C8 |
C9 |
172.3 |
|
C7X |
C7 |
C8 |
H8 |
352.3 |
|
O7A |
C7X |
C7 |
O7B |
183.9 |
|
C7 |
C7X |
O7B |
HOB7 |
180.0 |
|
N6 |
C7 |
C8 |
C7X |
191.3 |
|
C8 |
C7 |
C7X |
O7A |
193.2 |
|
C8 |
C7 |
C7X |
O7B |
9.3 |
|
C9 |
C8 |
C7 |
H8 |
180.0 |
|
C7 |
C8 |
C9 |
C9X |
180.3 |
|
C7 |
C8 |
C9 |
C9A |
357.1 |
|
O7A |
C7X |
C7 |
C8 |
193.2 |
|
C7 |
C7X |
O7A |
O7B |
176.3 |
|
O7A |
C7X |
O7B |
HOB7 |
356.3 |
|
O7B |
C7X |
C7 |
C8 |
9.3 |
|
C7 |
C7X |
O7B |
O7A |
183.7 |
|
C1A |
C9A |
C9 |
C8 |
182.5 |
|
C6A |
C9A |
C9 |
C8 |
3.0 |
|
C7 |
C8 |
C9 |
H8 |
180.0 |
|
C9X |
C9 |
C8 |
C9A |
183.2 |
|
C8 |
C9 |
C9X |
O9A |
6.9 |
|
C8 |
C9 |
C9X |
O9B |
188.8 |
|
C7 |
C8 |
H8 |
C9 |
180.0 |
|
H8 |
C8 |
C9 |
C9X |
0.3 |
|
H8 |
C8 |
C9 |
C9A |
177.1 |
|
C1A |
C9A |
C9 |
C9X |
359.0 |
|
C6A |
C9A |
C9 |
C9X |
179.5 |
|
C9X |
C9 |
C8 |
H8 |
0.3 |
|
C8 |
C9 |
C9X |
C9A |
176.6 |
|
O9A |
C9X |
C9 |
O9B |
178.1 |
|
C9 |
C9X |
O9B |
HOB9 |
180.0 |
|
C1A |
C9A |
C9 |
C6A |
179.5 |
|
C9A |
C9 |
C8 |
H8 |
177.1 |
|
C8 |
C9 |
C9A |
C9X |
183.5 |
|
C9A |
C9 |
C9X |
O9A |
190.2 |
|
C9A |
C9 |
C9X |
O9B |
12.2 |
|
O9A |
C9X |
C9 |
C9A |
190.2 |
|
C9 |
C9X |
O9A |
O9B |
181.8 |
|
O9A |
C9X |
O9B |
HOB9 |
1.9 |
|
O9B |
C9X |
C9 |
C9A |
12.2 |
|
C9 |
C9X |
O9B |
O9A |
178.1 |
|