PDB Chemical Component PPX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PPX

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.498 1.469
N1 HN11 1.000 1.009
N1 HN12 1.000 1.009
C2 C3 1.536 1.530
C2 C10 1.542 1.507
C2 H2 1.101 1.090
C3 C4   1.507
C3 H31 1.100 1.091
C3 H32 1.100 1.090
C4 C5   1.383
C4 C6   1.382
C5 C7 1.386 1.382
C5 H5 1.080 1.080
C6 C8 1.395 1.383
C6 H6 1.080 1.080
C7 C9 1.369 1.383
C7 H7 1.080 1.080
C8 C9 1.394 1.382
C8 H8 1.080 1.079
C9 H9 1.080 1.080
C10 O11 1.228 1.213
C10 N12 1.347 1.348
N12 C13 1.484 1.474
N12 C14 1.476 1.470
C13 C16 1.485 1.549
C13 H131 1.100 1.091
C13 H132 1.100 1.090
C14 C15 1.550 1.543
C14 C17 1.521 1.507
C14 H14 1.100 1.090
C15 C16 1.522 1.553
C15 H151 1.100 1.090
C15 H152 1.100 1.090
C16 H161 1.099 1.090
C16 H162 1.101 1.091
C17 O18 1.229 1.213
C17 N19 1.327 1.348
N19 C20 1.467 1.465
N19 H19 1.000 0.971
C20 C30 1.501 1.530
C20 H201 1.099 1.089
C20 H202 1.100 1.090
C30 N27 1.419 1.465
C30 H301 1.100 1.090
C30 H302 1.100 1.090
N27 C21 1.329 1.392
N27 H27 1.000 0.970
C21 C22 1.383 1.395
C21 C26 1.395 1.395
C22 C23 1.397 1.378
C22 H22 1.080 1.080
C23 N24 1.332 1.321
C23 H23 1.080 1.080
N24 C25 1.350 1.320
C25 C26 1.395 1.379
C25 H25 1.080 1.080
C26 H26 1.080 1.080

Bond Angles for PPX

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 HN11 109.5 111.0
C2 N1 HN12 109.5 111.0
N1 C2 C3 109.1 109.5
N1 C2 C10 105.6 109.5
N1 C2 H2 112.6 109.5
HN11 N1 HN12 109.5 111.0
C10 C2 C3 110.6 109.5
C3 C2 H2 107.8 109.5
C2 C3 C4   109.5
C2 C3 H31 110.3 109.5
C2 C3 H32 110.3 109.5
C10 C2 H2 111.2 109.5
C2 C10 O11 119.6 120.0
C2 C10 N12 117.5 120.0
C4 C3 H31   109.4
C4 C3 H32   109.5
C3 C4 C5   120.0
C3 C4 C6   120.0
H31 C3 H32 108.6 109.5
C5 C4 C6   120.0
C4 C5 C7   120.0
C4 C5 H5   119.9
C4 C6 C8   120.0
C4 C6 H6   120.1
C7 C5 H5 165.0 120.0
C5 C7 C9 120.7 120.0
C5 C7 H7 119.6 120.0
C8 C6 H6 165.1 119.9
C6 C8 C9 119.2 120.0
C6 C8 H8 120.4 120.0
C9 C7 H7 119.7 120.0
C7 C9 C8 119.6 120.0
C7 C9 H9 120.2 120.0
C9 C8 H8 120.4 120.0
C8 C9 H9 120.2 120.0
O11 C10 N12 122.8 120.0
C10 N12 C13 125.9 125.7
C10 N12 C14 121.5 125.7
C14 N12 C13 111.5 108.7
N12 C13 C16 102.0 104.8
N12 C13 H131 112.0 110.4
N12 C13 H132 112.0 110.4
N12 C14 C15 103.0 107.3
N12 C14 C17 111.6 109.9
N12 C14 H14 113.0 109.9
C13 C16 H161 111.1 111.1
C13 C16 H162 111.2 111.0
H131 C13 H132 106.8 110.4
C17 C14 C15 111.2 109.9
C15 C14 H14 113.4 109.9
C14 C15 C16 104.8 102.9
C14 C15 H151 111.1 110.7
C14 C15 H152 111.1 110.7
C17 C14 H14 105.0 110.0
C14 C17 O18 120.6 120.0
C14 C17 N19 117.2 120.1
C16 C15 H151 111.1 110.6
C16 C15 H152 111.1 110.8
C15 C16 H161 111.2 111.1
C15 C16 H162 111.2 110.9
H151 C15 H152 107.8 110.8
H161 C16 H162 107.7 110.9
O18 C17 N19 122.2 120.0
C17 N19 C20 123.7 120.0
C17 N19 H19 118.2 120.0
C20 N19 H19 118.2 120.0
N19 C20 C30 111.8 109.5
N19 C20 H201 108.7 109.5
N19 C20 H202 108.7 109.4
C30 C20 H201 108.7 109.5
C30 C20 H202 108.7 109.4
C20 C30 N27 108.0 109.5
C20 C30 H301 110.0 109.5
C20 C30 H302 110.0 109.4
H201 C20 H202 110.2 109.4
N27 C30 H301 110.0 109.5
N27 C30 H302 110.0 109.4
C30 N27 C21 121.7 120.0
C30 N27 H27 105.6 120.0
H301 C30 H302 109.0 109.4
C21 N27 H27 105.6 120.0
N27 C21 C22 116.3 120.9
N27 C21 C26 124.7 120.8
C22 C21 C26 118.9 118.3
C21 C22 C23 119.8 119.1
C21 C22 H22 120.1 120.5
C21 C26 C25 118.9 119.1
C21 C26 H26 120.5 120.5
C23 C22 H22 120.1 120.5
C22 C23 N24 120.5 120.9
C22 C23 H23 119.8 119.6
N24 C23 H23 119.7 119.5
C23 N24 C25 121.0 121.9
N24 C25 C26 120.9 120.8
N24 C25 H25 119.6 119.6
C26 C25 H25 119.6 119.6
C25 C26 H26 120.6 120.5

Torsion Angles for PPX

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HN11 N1 C2 HN12 240.0 236.1
C10 C2 N1 C3 241.1 240.0
C3 C2 N1 H2 240.4 240.0
N1 C2 C3 C4   65.0
N1 C2 C3 H31 284.0 185.0
N1 C2 C3 H32 43.9 305.0
C10 C2 N1 H2 121.5 120.0
N1 C2 C10 O11 47.1 20.0
N1 C2 C10 N12 230.3 200.0
C2 N1 HN11 HN12 120.0 123.9
HN11 N1 C2 C3 180.0 60.0
HN11 N1 C2 C10 61.1 300.0
HN11 N1 C2 H2 299.6 180.0
C2 N1 HN12 HN11 240.0 236.1
HN12 N1 C2 C3 300.0 184.0
HN12 N1 C2 C10 181.2 64.0
HN12 N1 C2 H2 59.7 304.0
C3 C2 N1 HN11 180.0 60.0
C3 C2 N1 HN12 300.0 184.0
N1 C2 C3 C10 244.3 240.0
N1 C2 C3 H2 122.6 120.0
C10 C2 C3 H2 238.3 240.0
C3 C2 C10 O11 289.2 260.0
C3 C2 C10 N12 112.5 80.0
C4 C3 C2 H31   240.0
C4 C3 C2 H32   120.0
C2 C3 C4 C5   90.0
C2 C3 C4 C6   269.7
H31 C3 C2 H32 240.0 240.0
C10 C2 N1 HN11 61.1 300.0
C10 C2 N1 HN12 181.2 64.0
N1 C2 C10 C3 117.9 120.0
N1 C2 C10 H2 237.6 240.0
C3 C2 C10 H2 119.7 120.0
C10 C2 C3 C4   185.0
C10 C2 C3 H31 39.7 305.0
C10 C2 C3 H32 159.6 65.0
O11 C10 C2 N12 176.7 180.0
C2 C10 N12 C13 13.4 0.1
C2 C10 N12 C14 180.7 179.7
H2 C2 N1 HN11 299.6 180.0
H2 C2 N1 HN12 59.7 304.0
N1 C2 H2 C3 239.6 240.0
N1 C2 H2 C10 118.2 120.0
C10 C2 H2 C3 121.4 120.0
H2 C2 C3 C4   305.0
H2 C2 C3 H31 161.4 65.0
H2 C2 C3 H32 281.4 185.0
H2 C2 C10 O11 169.5 140.0
H2 C2 C10 N12 352.7 320.0
C4 C3 C2 H2   305.0
C2 C3 C4 H31   120.0
C2 C3 C4 H32   240.0
H31 C3 C4 H32   120.0
C5 C4 C3 C6   180.3
C3 C4 C5 C7   180.0
C3 C4 C5 H5   360.0
C3 C4 C6 C8   180.0
C3 C4 C6 H6   0.1
H31 C3 C2 H2 161.4 65.0
C2 C3 H31 C4   240.0
C2 C3 H31 H32 121.0 120.0
C4 C3 H31 H32   240.0
H31 C3 C4 C5   330.0
H31 C3 C4 C6   149.7
H32 C3 C2 H2 281.4 185.0
C2 C3 H32 C4   120.0
C2 C3 H32 H31 239.0 240.0
C4 C3 H32 H31   120.0
H32 C3 C4 C5   210.0
H32 C3 C4 C6   29.7
C5 C4 C3 H31   330.0
C5 C4 C3 H32   210.0
C3 C4 C5 C6   179.7
C5 C4 C6 C8   359.7
C5 C4 C6 H6   179.7
C7 C5 C4 H5   180.0
C4 C5 C7 C9   0.0
C4 C5 C7 H7   179.9
C6 C4 C3 H31   149.7
C6 C4 C3 H32   29.7
C3 C4 C6 C5   180.3
C6 C4 C5 C7   0.3
C6 C4 C5 H5   180.3
C8 C6 C4 H6   179.9
C4 C6 C8 C9   0.0
C4 C6 C8 H8   180.0
C7 C5 C4 C6   0.3
C4 C5 C7 H5   180.0
C9 C7 C5 H7 180.0 180.1
C5 C7 C9 C8 359.0 359.7
C5 C7 C9 H9 179.0 180.0
H5 C5 C4 C6   180.3
C4 C5 H5 C7   180.0
H5 C5 C7 C9 178.2 180.0
H5 C5 C7 H7 358.2 359.9
C4 C6 C8 H6   180.1
C7 C9 C8 C6 1.0 0.3
C9 C8 C6 H8 180.0 180.1
C6 C8 C9 H9 181.0 180.0
C4 C6 H6 C8   179.9
H6 C6 C8 C9 181.8 180.0
H6 C6 C8 H8 1.7 359.9
C9 C7 C5 H5 178.2 180.0
C5 C7 C9 H7 180.0 179.9
C6 C8 C9 C7 1.0 0.3
C7 C9 C8 H8 181.1 180.3
C8 C9 C7 H9 180.0 179.7
H7 C7 C5 H5 358.2 359.9
C5 C7 H7 C9 180.0 180.1
H7 C7 C9 C8 179.0 179.8
H7 C7 C9 H9 359.0 0.1
C9 C8 C6 H6 181.8 180.0
C6 C8 C9 H8 180.0 179.9
C8 C9 C7 H7 179.0 179.8
C7 C9 C8 H9 180.0 180.3
H8 C8 C6 H6 1.7 359.9
C6 C8 H8 C9 180.0 180.1
H8 C8 C9 H9 1.0 0.0
H9 C9 C7 H7 359.0 0.1
C7 C9 H9 C8 180.0 179.7
H9 C9 C8 H8 1.0 0.0
O11 C10 C2 C3 289.2 260.0
O11 C10 C2 H2 169.5 140.0
C2 C10 O11 N12 183.5 180.0
O11 C10 N12 C13 196.8 180.1
O11 C10 N12 C14 4.1 359.6
N12 C10 C2 C3 112.5 80.0
N12 C10 C2 H2 352.7 320.0
C2 C10 N12 O11 176.6 180.0
C14 N12 C10 C13 167.3 179.6
C10 N12 C13 C16 196.4 204.1
C10 N12 C13 H131 316.5 322.8
C10 N12 C13 H132 76.4 85.2
C10 N12 C14 C15 184.0 179.0
C10 N12 C14 C17 303.3 298.5
C10 N12 C14 H14 61.4 59.6
C10 N12 C13 C14 168.4 179.6
C13 N12 C14 C15 353.0 358.7
C13 N12 C14 C17 112.3 118.1
C13 N12 C14 H14 230.3 239.2
N12 C13 C16 H161 82.6 81.0
N12 C13 C16 H162 202.6 204.9
H131 C13 N12 H132 240.0 237.6
C10 N12 C14 C13 191.1 180.4
C14 N12 C13 C16 28.1 24.5
C14 N12 C13 H131 148.1 143.2
C14 N12 C13 H132 268.1 265.6
C17 C14 N12 C15 119.3 119.4
C15 C14 N12 H14 122.6 119.4
N12 C14 C15 C16 343.6 338.0
N12 C14 C15 H151 103.6 96.2
N12 C14 C15 H152 223.6 219.5
C17 C14 N12 H14 242.0 238.9
N12 C14 C17 O18 308.5 360.0
N12 C14 C17 N19 127.9 180.0
N12 C13 C16 H131 120.0 118.8
N12 C13 C16 H132 240.0 241.1
C13 C16 C15 H151 274.1 277.2
C13 C16 C15 H152 154.1 153.9
C15 C16 C13 H161 240.0 241.8
C15 C16 C13 H162 120.0 117.9
H161 C16 C13 H162 240.0 236.1
N12 C13 H131 C16 246.1 244.6
N12 C13 H131 H132 123.0 122.4
H131 C13 C16 H161 322.7 322.2
H131 C13 C16 H162 82.6 86.1
N12 C13 H132 C16 114.0 115.4
N12 C13 H132 H131 237.0 237.7
H132 C13 C16 H161 202.6 199.9
H132 C13 C16 H162 322.6 323.8
C15 C14 N12 C13 353.0 358.7
N12 C14 C15 C17 119.6 119.5
N12 C14 C15 H14 237.6 240.6
C17 C14 C15 H14 118.0 121.1
C15 C14 C17 O18 62.9 117.8
C15 C14 C17 N19 242.2 297.8
C16 C15 C14 H151 240.0 241.8
C16 C15 C14 H152 120.0 118.5
C14 C15 C16 H161 274.1 277.3
C14 C15 C16 H162 154.1 153.5
H151 C15 C14 H152 240.0 236.7
C17 C14 N12 C13 112.3 118.1
N12 C14 C17 C15 245.7 242.1
N12 C14 C17 H14 122.7 121.1
C15 C14 C17 H14 237.0 238.9
C17 C14 C15 C16 224.0 218.5
C17 C14 C15 H151 344.0 336.7
C17 C14 C15 H152 104.0 100.0
O18 C17 C14 N19 180.7 180.0
C14 C17 N19 C20 181.0 180.0
C14 C17 N19 H19 1.0 0.0
H14 C14 N12 C13 230.3 239.2
N12 C14 H14 C15 116.6 117.8
N12 C14 H14 C17 238.2 238.9
C17 C14 H14 C15 238.4 239.0
H14 C14 C15 C16 105.9 97.4
H14 C14 C15 H151 226.0 215.6
H14 C14 C15 H152 346.0 338.9
H14 C14 C17 O18 185.8 238.9
H14 C14 C17 N19 5.2 58.9
N12 C13 C16 C15 322.6 322.8
C13 C16 C15 H161 120.0 118.2
C13 C16 C15 H162 240.0 242.0
C16 C15 C14 H14 105.9 97.4
C14 C15 C16 H151 120.0 118.3
C14 C15 C16 H152 240.0 241.6
H151 C15 C16 H152 120.0 123.3
H161 C16 C15 H162 120.0 123.8
H151 C15 C14 H14 226.0 215.6
C14 C15 H151 C16 243.8 246.6
C14 C15 H151 H152 121.9 123.3
C16 C15 H151 H152 238.1 236.7
H151 C15 C16 H161 154.1 159.0
H151 C15 C16 H162 34.1 35.2
H152 C15 C14 H14 346.0 338.9
C14 C15 H152 C16 116.2 113.6
C14 C15 H152 H151 238.1 236.7
C16 C15 H152 H151 121.9 123.2
H152 C15 C16 H161 34.1 35.7
H152 C15 C16 H162 274.1 271.9
C13 C16 H161 H162 122.0 123.9
H161 C16 C15 H151 154.1 159.0
H161 C16 C15 H152 34.1 35.7
C15 C16 H161 H162 238.0 236.2
C13 C16 H162 H161 238.0 236.0
H162 C16 C15 H151 34.1 35.2
H162 C16 C15 H152 274.1 271.9
C15 C16 H162 H161 122.0 124.0
O18 C17 C14 C15 62.9 117.8
O18 C17 C14 H14 185.8 238.9
C14 C17 O18 N19 179.3 180.0
O18 C17 N19 C20 0.3 360.0
O18 C17 N19 H19 180.3 180.0
N19 C17 C14 C15 242.2 297.8
N19 C17 C14 H14 5.2 58.9
C14 C17 N19 O18 180.7 180.0
C20 N19 C17 H19 180.0 180.0
C17 N19 C20 C30 147.2 180.0
C17 N19 C20 H201 267.2 300.1
C17 N19 C20 H202 27.2 60.0
C17 N19 C20 H19 180.0 180.0
C30 C20 N19 H201 240.0 239.9
C30 C20 N19 H202 120.0 120.0
N19 C20 C30 N27 259.4 180.0
N19 C20 C30 H301 19.4 300.1
N19 C20 C30 H302 139.4 60.1
H201 C20 N19 H202 240.0 240.1
C17 N19 H19 C20 180.0 180.0
H19 N19 C20 C30 327.1 359.9
H19 N19 C20 H201 87.2 120.0
H19 N19 C20 H202 207.1 240.0
C30 C20 N19 H19 327.1 359.9
N19 C20 C30 H201 120.0 120.1
N19 C20 C30 H202 240.0 240.1
H201 C20 C30 H202 120.0 120.0
N27 C30 C20 H301 240.0 239.9
N27 C30 C20 H302 120.0 119.9
C20 C30 N27 C21 168.6 180.0
C20 C30 N27 H27 288.6 0.1
H301 C30 C20 H302 240.0 240.0
H201 C20 N19 H19 87.2 120.0
N19 C20 H201 C30 238.1 239.9
N19 C20 H201 H202 119.0 119.9
C30 C20 H201 H202 241.0 240.0
H201 C20 C30 N27 139.4 59.9
H201 C20 C30 H301 259.4 180.0
H201 C20 C30 H302 19.4 300.0
H202 C20 N19 H19 207.1 240.0
N19 C20 H202 C30 121.9 120.0
N19 C20 H202 H201 241.0 240.0
C30 C20 H202 H201 119.0 120.1
H202 C20 C30 N27 19.4 299.9
H202 C20 C30 H301 139.4 60.0
H202 C20 C30 H302 259.4 180.0
N27 C30 C20 H201 139.4 59.9
N27 C30 C20 H202 19.4 299.9
C20 C30 N27 H301 120.0 120.1
C20 C30 N27 H302 240.0 240.0
H301 C30 N27 H302 120.0 119.9
C21 N27 C30 H27 240.0 180.0
C30 N27 C21 C22 172.9 180.0
C30 N27 C21 C26 350.1 359.7
H301 C30 C20 H201 259.4 180.0
H301 C30 C20 H202 139.4 60.0
C20 C30 H301 N27 241.2 239.9
C20 C30 H301 H302 120.6 120.0
N27 C30 H301 H302 239.4 240.1
H301 C30 N27 C21 48.6 60.0
H301 C30 N27 H27 168.5 240.0
H302 C30 C20 H201 19.4 300.0
H302 C30 C20 H202 259.4 180.0
C20 C30 H302 N27 118.8 120.0
C20 C30 H302 H301 239.4 240.0
N27 C30 H302 H301 120.6 120.0
H302 C30 N27 C21 288.6 300.0
H302 C30 N27 H27 48.6 120.0
C21 N27 C30 H301 48.6 60.0
C21 N27 C30 H302 288.6 300.0
C30 N27 C21 H27 120.0 180.0
C22 C21 N27 C26 182.7 180.3
N27 C21 C22 C23 178.0 180.0
N27 C21 C22 H22 358.0 359.9
N27 C21 C26 C25 182.3 179.7
N27 C21 C26 H26 2.3 360.0
H27 N27 C30 H301 168.5 240.0
H27 N27 C30 H302 48.6 120.0
C30 N27 H27 C21 229.9 180.0
H27 N27 C21 C22 52.9 0.0
H27 N27 C21 C26 230.2 179.7
C22 C21 N27 H27 52.9 0.0
N27 C21 C22 C26 177.5 179.7
C22 C21 C26 C25 359.5 359.4
C22 C21 C26 H26 179.5 179.7
C23 C22 C21 H22 180.0 180.1
C21 C22 C23 N24 359.2 360.0
C21 C22 C23 H23 179.2 180.0
C26 C21 N27 H27 230.2 179.7
N27 C21 C26 C22 182.8 180.3
C26 C21 C22 C23 0.5 0.3
C26 C21 C22 H22 180.6 180.3
N24 C25 C26 C21 0.7 0.6
C21 C26 C25 H25 180.7 180.3
C25 C26 C21 H26 180.0 179.7
C23 C22 C21 C26 0.5 0.3
C21 C22 C23 H22 180.0 179.9
N24 C23 C22 H23 180.0 180.0
C22 C23 N24 C25 0.9 0.0
H22 C22 C21 C26 180.6 180.3
C21 C22 H22 C23 180.0 180.1
H22 C22 C23 N24 179.2 180.0
H22 C22 C23 H23 359.2 0.1
N24 C23 C22 H22 179.2 180.0
C22 C23 N24 H23 180.0 180.0
C23 N24 C25 C26 359.1 359.7
C23 N24 C25 H25 179.1 180.0
H23 C23 C22 H22 359.2 0.1
C22 C23 H23 N24 180.0 180.0
H23 C23 N24 C25 180.9 180.0
C21 C26 C25 N24 0.7 0.6
C25 N24 C23 H23 180.9 180.0
C26 C25 N24 H25 180.0 179.7
N24 C25 C26 H26 180.7 180.3
C21 C26 C25 H26 180.0 180.3
N24 C25 C26 H25 180.0 180.3
N24 C25 H25 C26 180.0 179.7
H25 C25 C26 H26 0.7 0.0
C21 C26 H26 C25 180.0 179.7
H26 C26 C25 H25 0.7 0.0