PDB Chemical Component PPR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PPR
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
O1 |
1.293 |
1.212 |
C1 |
O2' |
1.224 |
1.346 |
C1 |
C2 |
1.529 |
1.491 |
O2' |
H2'O |
0.950 |
0.967 |
C2 |
C3 |
1.357 |
1.505 |
C2 |
O2 |
1.315 |
1.208 |
C3 |
P |
1.958 |
1.823 |
C3 |
H31 |
1.115 |
1.089 |
C3 |
H32 |
1.115 |
1.090 |
P |
O1P |
1.557 |
1.480 |
P |
O2P |
1.453 |
1.609 |
P |
O3P |
1.475 |
1.610 |
O2P |
H2P |
0.950 |
0.967 |
O3P |
H3P |
0.950 |
0.967 |
Bond Angles for PPR
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
O2' |
121.9 |
119.9 |
O1 |
C1 |
C2 |
115.4 |
120.0 |
O2' |
C1 |
C2 |
122.7 |
120.1 |
C1 |
O2' |
H2'O |
121.9 |
120.0 |
C1 |
C2 |
C3 |
130.3 |
120.0 |
C1 |
C2 |
O2 |
113.7 |
119.9 |
C3 |
C2 |
O2 |
116.0 |
120.1 |
C2 |
C3 |
P |
103.4 |
109.5 |
C2 |
C3 |
H31 |
114.5 |
109.6 |
C2 |
C3 |
H32 |
114.5 |
109.5 |
P |
C3 |
H31 |
114.5 |
109.5 |
P |
C3 |
H32 |
114.5 |
109.4 |
C3 |
P |
O1P |
106.6 |
109.4 |
C3 |
P |
O2P |
104.3 |
109.5 |
C3 |
P |
O3P |
107.9 |
109.5 |
H31 |
C3 |
H32 |
96.0 |
109.5 |
O1P |
P |
O2P |
113.6 |
109.4 |
O1P |
P |
O3P |
108.4 |
109.5 |
O2P |
P |
O3P |
115.5 |
109.5 |
P |
O2P |
H2P |
104.3 |
106.8 |
P |
O3P |
H3P |
107.9 |
106.8 |
Torsion Angles for PPR
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2' |
C1 |
O1 |
C2 |
180.4 |
179.9 |
O1 |
C1 |
O2' |
H2'O |
180.0 |
0.0 |
O1 |
C1 |
C2 |
C3 |
357.2 |
359.9 |
O1 |
C1 |
C2 |
O2 |
178.6 |
180.0 |
O1 |
C1 |
O2' |
C2 |
179.6 |
180.1 |
O2' |
C1 |
C2 |
C3 |
176.8 |
180.0 |
O2' |
C1 |
C2 |
O2 |
358.2 |
0.0 |
O1 |
C1 |
C2 |
O2' |
180.4 |
179.9 |
C2 |
C1 |
O2' |
H2'O |
0.5 |
180.0 |
C3 |
C2 |
C1 |
O2 |
178.6 |
179.9 |
C1 |
C2 |
C3 |
P |
257.4 |
180.0 |
C1 |
C2 |
C3 |
H31 |
132.1 |
300.0 |
C1 |
C2 |
C3 |
H32 |
22.6 |
60.1 |
H2'O |
O2' |
C1 |
C2 |
0.5 |
180.0 |
C1 |
C2 |
C3 |
O2 |
181.4 |
180.1 |
P |
C3 |
C2 |
H31 |
125.3 |
240.0 |
P |
C3 |
C2 |
H32 |
234.8 |
119.9 |
C2 |
C3 |
P |
O1P |
152.8 |
60.1 |
C2 |
C3 |
P |
O2P |
32.3 |
180.0 |
C2 |
C3 |
P |
O3P |
269.0 |
300.1 |
H31 |
C3 |
C2 |
H32 |
109.5 |
239.9 |
C1 |
C2 |
O2 |
C3 |
178.8 |
179.9 |
O2 |
C2 |
C3 |
P |
75.9 |
360.0 |
O2 |
C2 |
C3 |
H31 |
310.7 |
120.0 |
O2 |
C2 |
C3 |
H32 |
201.2 |
240.1 |
P |
C3 |
C2 |
O2 |
75.9 |
360.0 |
C2 |
C3 |
P |
H31 |
234.7 |
120.1 |
C2 |
C3 |
P |
H32 |
125.3 |
240.1 |
H31 |
C3 |
P |
H32 |
250.6 |
120.0 |
O1P |
P |
C3 |
O2P |
120.4 |
240.1 |
O1P |
P |
C3 |
O3P |
243.7 |
120.0 |
O2P |
P |
C3 |
O3P |
123.3 |
239.9 |
C3 |
P |
O2P |
H2P |
180.0 |
180.0 |
C3 |
P |
O3P |
H3P |
180.0 |
299.9 |
H31 |
C3 |
C2 |
O2 |
310.7 |
120.0 |
C2 |
C3 |
H31 |
P |
119.2 |
240.0 |
C2 |
C3 |
H31 |
H32 |
239.6 |
120.1 |
P |
C3 |
H31 |
H32 |
120.4 |
240.1 |
H31 |
C3 |
P |
O1P |
278.0 |
300.0 |
H31 |
C3 |
P |
O2P |
157.6 |
59.9 |
H31 |
C3 |
P |
O3P |
34.3 |
180.0 |
H32 |
C3 |
C2 |
O2 |
201.2 |
240.1 |
C2 |
C3 |
H32 |
P |
240.8 |
119.9 |
C2 |
C3 |
H32 |
H31 |
120.4 |
239.9 |
P |
C3 |
H32 |
H31 |
239.6 |
119.9 |
H32 |
C3 |
P |
O1P |
27.5 |
180.0 |
H32 |
C3 |
P |
O2P |
267.1 |
300.0 |
H32 |
C3 |
P |
O3P |
143.8 |
60.0 |
O1P |
P |
C3 |
H31 |
278.0 |
300.0 |
O1P |
P |
C3 |
H32 |
27.5 |
180.0 |
C3 |
P |
O1P |
O2P |
245.7 |
120.0 |
C3 |
P |
O1P |
O3P |
116.0 |
240.0 |
O2P |
P |
O1P |
O3P |
230.2 |
120.0 |
O1P |
P |
O2P |
H2P |
64.4 |
299.9 |
O1P |
P |
O3P |
H3P |
295.1 |
179.9 |
O2P |
P |
C3 |
H31 |
157.6 |
59.9 |
O2P |
P |
C3 |
H32 |
267.1 |
300.0 |
C3 |
P |
O2P |
O1P |
115.7 |
240.1 |
C3 |
P |
O2P |
O3P |
241.8 |
120.0 |
O1P |
P |
O2P |
O3P |
126.1 |
240.0 |
O2P |
P |
O3P |
H3P |
63.8 |
60.0 |
O3P |
P |
C3 |
H31 |
34.3 |
180.0 |
O3P |
P |
C3 |
H32 |
143.8 |
60.0 |
C3 |
P |
O3P |
O1P |
244.9 |
120.0 |
C3 |
P |
O3P |
O2P |
116.2 |
240.0 |
O1P |
P |
O3P |
O2P |
231.3 |
120.0 |
O3P |
P |
O2P |
H2P |
298.3 |
59.9 |
H2P |
O2P |
P |
O3P |
298.3 |
59.9 |