PDB Chemical Component PPN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PPN

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.452 1.442
N H 1.020 1.006
N H2 1.020 1.006
CA C 1.513 1.522
CA CB 1.572 1.534
CA HA 1.115 1.096
C O 1.222 1.226
C OXT 1.329 1.355
OXT HXT 0.949 0.981
CB CG 1.532 1.510
CB HB2 1.115 1.098
CB HB3 1.115 1.099
CG CD1 1.396 1.385
CG CD2 1.382 1.387
CD1 CE1 1.397 1.395
CD1 HD1 1.103 1.087
CD2 CE2 1.385 1.395
CD2 HD2 1.103 1.087
CE1 CZ 1.399 1.395
CE1 HE1 1.103 1.087
CE2 CZ 1.398 1.395
CE2 HE2 1.103 1.088
CZ N1 1.511 1.420
N1 O1 1.202 1.255
N1 O2 1.205 1.255

Bond Angles for PPN

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 105.6 119.0
CA N H2 113.7 119.0
N CA C 105.6 111.1
N CA CB 113.6 111.1
N CA HA 109.0 106.2
H N H2 113.6 120.6
C CA CB 108.5 110.0
C CA HA 114.2 106.9
CA C O 116.7 122.9
CA C OXT 116.9 114.8
CB CA HA 106.2 111.4
CA CB CG 113.0 113.0
CA CB HB2 110.9 110.4
CA CB HB3 110.9 110.2
O C OXT 126.2 122.2
C OXT HXT 116.9 114.8
CG CB HB2 110.9 108.0
CG CB HB3 111.0 109.7
CB CG CD1 122.4 119.4
CB CG CD2 118.4 119.3
HB2 CB HB3 99.4 105.2
CD1 CG CD2 119.0 121.3
CG CD1 CE1 120.6 119.4
CG CD1 HD1 119.6 121.1
CG CD2 CE2 120.4 119.3
CG CD2 HD2 119.7 121.2
CE1 CD1 HD1 119.8 119.5
CD1 CE1 CZ 120.8 120.0
CD1 CE1 HE1 119.5 119.3
CE2 CD2 HD2 120.0 119.5
CD2 CE2 CZ 121.9 120.0
CD2 CE2 HE2 118.5 119.2
CZ CE1 HE1 119.7 120.7
CE1 CZ CE2 117.4 120.0
CE1 CZ N1 121.9 120.0
CZ CE2 HE2 119.5 120.8
CE2 CZ N1 120.3 120.0
CZ N1 O1 114.3 119.0
CZ N1 O2 115.8 119.0
O1 N1 O2 129.8 122.0

Torsion Angles for PPN

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 125.3 166.5
C CA N CB 118.8 122.9
C CA N HA 236.9 244.1
N CA C O 320.5 325.4
N CA C OXT 135.9 145.1
CB CA N HA 118.2 121.3
N CA CB CG 167.2 201.8
N CA CB HB2 292.5 322.9
N CA CB HB3 42.0 78.7
CA N H H2 234.7 193.7
H N CA C 180.0 267.1
H N CA CB 61.3 144.2
H N CA HA 303.1 23.0
CA N H2 H 120.9 166.3
H2 N CA C 54.8 100.6
H2 N CA CB 296.0 337.7
H2 N CA HA 177.9 216.4
C CA N H 180.0 267.1
C CA N H2 54.8 100.6
N CA C CB 237.9 236.5
N CA C HA 119.8 115.4
CB CA C HA 241.9 238.9
C CA CB CG 50.2 78.3
C CA CB HB2 175.4 199.4
C CA CB HB3 284.9 315.2
O C CA OXT 184.6 180.3
CA C OXT HXT 180.0 180.4
CB CA N H 61.3 144.2
CB CA N H2 296.0 337.7
N CA CB C 117.1 123.5
N CA CB HA 240.2 241.8
C CA CB HA 123.1 118.3
CB CA C O 82.6 88.9
CB CA C OXT 258.0 268.6
CG CB CA HB2 234.7 238.9
CG CB CA HB3 125.3 123.1
CA CB CG CD1 60.1 270.0
CA CB CG CD2 246.7 90.0
HB2 CB CA HB3 250.6 244.2
HA CA N H 303.1 23.0
HA CA N H2 177.9 216.4
N CA HA C 242.2 241.3
N CA HA CB 122.7 121.1
C CA HA CB 240.5 239.8
HA CA C O 200.8 210.0
HA CA C OXT 16.2 29.7
HA CA CB CG 287.1 320.0
HA CA CB HB2 52.3 81.1
HA CA CB HB3 161.8 196.9
O C CA CB 82.6 88.9
O C CA HA 200.8 210.0
CA C O OXT 174.9 179.7
O C OXT HXT 354.9 0.1
OXT C CA CB 258.0 268.6
OXT C CA HA 16.2 29.7
CA C OXT O 185.1 180.3
CG CB CA HA 287.1 320.0
CA CB CG HB2 125.2 122.5
CA CB CG HB3 234.7 236.7
HB2 CB CG HB3 109.5 114.2
CD1 CG CB CD2 173.4 180.0
CB CG CD1 CE1 188.0 180.0
CB CG CD1 HD1 8.0 0.0
CB CG CD2 CE2 172.4 180.0
CB CG CD2 HD2 352.4 359.9
HB2 CB CA HA 52.3 81.1
CA CB HB2 CG 233.6 236.0
CA CB HB2 HB3 116.8 118.9
CG CB HB2 HB3 243.2 242.9
HB2 CB CG CD1 294.8 147.5
HB2 CB CG CD2 121.4 327.6
HB3 CB CA HA 161.8 196.9
CA CB HB3 CG 126.4 125.0
CA CB HB3 HB2 243.3 241.0
CG CB HB3 HB2 116.8 116.0
HB3 CB CG CD1 185.3 33.4
HB3 CB CG CD2 11.9 213.4
CD1 CG CB HB2 294.8 147.5
CD1 CG CB HB3 185.3 33.4
CB CG CD1 CD2 186.7 180.0
CD1 CG CD2 CE2 358.7 0.0
CD1 CG CD2 HD2 178.8 180.0
CE1 CD1 CG HD1 180.0 180.0
CG CD1 CE1 CZ 0.1 0.0
CG CD1 CE1 HE1 180.1 180.0
CD2 CG CB HB2 121.4 327.6
CD2 CG CB HB3 11.9 213.4
CB CG CD2 CD1 173.6 180.0
CD2 CG CD1 CE1 1.3 360.0
CD2 CG CD1 HD1 181.3 180.0
CE2 CD2 CG HD2 180.0 180.1
CG CD2 CE2 CZ 359.8 360.0
CG CD2 CE2 HE2 179.8 179.9
CE1 CD1 CG CD2 1.3 360.0
CG CD1 CE1 HD1 180.0 180.0
CZ CE1 CD1 HE1 180.0 180.0
CD1 CE1 CZ CE2 358.5 0.0
CD1 CE1 CZ N1 171.5 180.0
HD1 CD1 CG CD2 181.3 180.0
CG CD1 HD1 CE1 180.0 180.0
HD1 CD1 CE1 CZ 180.1 180.0
HD1 CD1 CE1 HE1 0.1 360.0
CG CD2 CE2 HD2 180.0 179.9
CE1 CZ CE2 CD2 1.5 360.0
CZ CE2 CD2 HE2 180.0 180.0
CD2 CE2 CZ N1 188.5 180.0
CG CD2 HD2 CE2 180.0 180.1
HD2 CD2 CE2 CZ 179.8 180.1
HD2 CD2 CE2 HE2 359.8 0.0
CZ CE1 CD1 HD1 180.1 180.0
CD1 CE1 CZ HE1 180.0 180.0
CD2 CE2 CZ CE1 1.5 360.0
CE1 CZ CE2 HE2 181.5 180.0
CE2 CZ CE1 N1 187.1 180.0
CE1 CZ N1 O1 188.4 180.0
CE1 CZ N1 O2 8.6 0.1
HE1 CE1 CD1 HD1 0.1 360.0
CD1 CE1 HE1 CZ 180.0 180.0
HE1 CE1 CZ CE2 178.5 180.0
HE1 CE1 CZ N1 351.4 360.0
CZ CE2 CD2 HD2 179.8 180.1
CD2 CE2 CZ HE2 180.0 179.9
CE2 CZ CE1 HE1 178.5 180.0
CE1 CZ CE2 N1 173.1 180.0
CE2 CZ N1 O1 1.1 359.9
CE2 CZ N1 O2 181.4 180.0
HE2 CE2 CD2 HD2 359.8 0.0
CD2 CE2 HE2 CZ 180.0 180.0
HE2 CE2 CZ N1 8.5 0.1
N1 CZ CE1 HE1 351.4 360.0
CE1 CZ N1 CE2 187.3 180.0
N1 CZ CE2 HE2 8.5 0.1
O1 N1 CZ O2 179.7 179.9
CZ N1 O1 O2 180.3 180.1
CZ N1 O2 O1 179.7 179.9