PDB Chemical Component PPN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PPN
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.452 |
1.442 |
| N |
H |
1.020 |
1.006 |
| N |
H2 |
1.020 |
1.006 |
| CA |
C |
1.513 |
1.522 |
| CA |
CB |
1.572 |
1.534 |
| CA |
HA |
1.115 |
1.096 |
| C |
O |
1.222 |
1.226 |
| C |
OXT |
1.329 |
1.355 |
| OXT |
HXT |
0.949 |
0.981 |
| CB |
CG |
1.532 |
1.510 |
| CB |
HB2 |
1.115 |
1.098 |
| CB |
HB3 |
1.115 |
1.099 |
| CG |
CD1 |
1.396 |
1.385 |
| CG |
CD2 |
1.382 |
1.387 |
| CD1 |
CE1 |
1.397 |
1.395 |
| CD1 |
HD1 |
1.103 |
1.087 |
| CD2 |
CE2 |
1.385 |
1.395 |
| CD2 |
HD2 |
1.103 |
1.087 |
| CE1 |
CZ |
1.399 |
1.395 |
| CE1 |
HE1 |
1.103 |
1.087 |
| CE2 |
CZ |
1.398 |
1.395 |
| CE2 |
HE2 |
1.103 |
1.088 |
| CZ |
N1 |
1.511 |
1.420 |
| N1 |
O1 |
1.202 |
1.255 |
| N1 |
O2 |
1.205 |
1.255 |
Bond Angles for PPN
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
105.6 |
119.0 |
| CA |
N |
H2 |
113.7 |
119.0 |
| N |
CA |
C |
105.6 |
111.1 |
| N |
CA |
CB |
113.6 |
111.1 |
| N |
CA |
HA |
109.0 |
106.2 |
| H |
N |
H2 |
113.6 |
120.6 |
| C |
CA |
CB |
108.5 |
110.0 |
| C |
CA |
HA |
114.2 |
106.9 |
| CA |
C |
O |
116.7 |
122.9 |
| CA |
C |
OXT |
116.9 |
114.8 |
| CB |
CA |
HA |
106.2 |
111.4 |
| CA |
CB |
CG |
113.0 |
113.0 |
| CA |
CB |
HB2 |
110.9 |
110.4 |
| CA |
CB |
HB3 |
110.9 |
110.2 |
| O |
C |
OXT |
126.2 |
122.2 |
| C |
OXT |
HXT |
116.9 |
114.8 |
| CG |
CB |
HB2 |
110.9 |
108.0 |
| CG |
CB |
HB3 |
111.0 |
109.7 |
| CB |
CG |
CD1 |
122.4 |
119.4 |
| CB |
CG |
CD2 |
118.4 |
119.3 |
| HB2 |
CB |
HB3 |
99.4 |
105.2 |
| CD1 |
CG |
CD2 |
119.0 |
121.3 |
| CG |
CD1 |
CE1 |
120.6 |
119.4 |
| CG |
CD1 |
HD1 |
119.6 |
121.1 |
| CG |
CD2 |
CE2 |
120.4 |
119.3 |
| CG |
CD2 |
HD2 |
119.7 |
121.2 |
| CE1 |
CD1 |
HD1 |
119.8 |
119.5 |
| CD1 |
CE1 |
CZ |
120.8 |
120.0 |
| CD1 |
CE1 |
HE1 |
119.5 |
119.3 |
| CE2 |
CD2 |
HD2 |
120.0 |
119.5 |
| CD2 |
CE2 |
CZ |
121.9 |
120.0 |
| CD2 |
CE2 |
HE2 |
118.5 |
119.2 |
| CZ |
CE1 |
HE1 |
119.7 |
120.7 |
| CE1 |
CZ |
CE2 |
117.4 |
120.0 |
| CE1 |
CZ |
N1 |
121.9 |
120.0 |
| CZ |
CE2 |
HE2 |
119.5 |
120.8 |
| CE2 |
CZ |
N1 |
120.3 |
120.0 |
| CZ |
N1 |
O1 |
114.3 |
119.0 |
| CZ |
N1 |
O2 |
115.8 |
119.0 |
| O1 |
N1 |
O2 |
129.8 |
122.0 |
Torsion Angles for PPN
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.3 |
166.5 |
| C |
CA |
N |
CB |
118.8 |
122.9 |
| C |
CA |
N |
HA |
236.9 |
244.1 |
| N |
CA |
C |
O |
320.5 |
325.4 |
| N |
CA |
C |
OXT |
135.9 |
145.1 |
| CB |
CA |
N |
HA |
118.2 |
121.3 |
| N |
CA |
CB |
CG |
167.2 |
201.8 |
| N |
CA |
CB |
HB2 |
292.5 |
322.9 |
| N |
CA |
CB |
HB3 |
42.0 |
78.7 |
| CA |
N |
H |
H2 |
234.7 |
193.7 |
| H |
N |
CA |
C |
180.0 |
267.1 |
| H |
N |
CA |
CB |
61.3 |
144.2 |
| H |
N |
CA |
HA |
303.1 |
23.0 |
| CA |
N |
H2 |
H |
120.9 |
166.3 |
| H2 |
N |
CA |
C |
54.8 |
100.6 |
| H2 |
N |
CA |
CB |
296.0 |
337.7 |
| H2 |
N |
CA |
HA |
177.9 |
216.4 |
| C |
CA |
N |
H |
180.0 |
267.1 |
| C |
CA |
N |
H2 |
54.8 |
100.6 |
| N |
CA |
C |
CB |
237.9 |
236.5 |
| N |
CA |
C |
HA |
119.8 |
115.4 |
| CB |
CA |
C |
HA |
241.9 |
238.9 |
| C |
CA |
CB |
CG |
50.2 |
78.3 |
| C |
CA |
CB |
HB2 |
175.4 |
199.4 |
| C |
CA |
CB |
HB3 |
284.9 |
315.2 |
| O |
C |
CA |
OXT |
184.6 |
180.3 |
| CA |
C |
OXT |
HXT |
180.0 |
180.4 |
| CB |
CA |
N |
H |
61.3 |
144.2 |
| CB |
CA |
N |
H2 |
296.0 |
337.7 |
| N |
CA |
CB |
C |
117.1 |
123.5 |
| N |
CA |
CB |
HA |
240.2 |
241.8 |
| C |
CA |
CB |
HA |
123.1 |
118.3 |
| CB |
CA |
C |
O |
82.6 |
88.9 |
| CB |
CA |
C |
OXT |
258.0 |
268.6 |
| CG |
CB |
CA |
HB2 |
234.7 |
238.9 |
| CG |
CB |
CA |
HB3 |
125.3 |
123.1 |
| CA |
CB |
CG |
CD1 |
60.1 |
270.0 |
| CA |
CB |
CG |
CD2 |
246.7 |
90.0 |
| HB2 |
CB |
CA |
HB3 |
250.6 |
244.2 |
| HA |
CA |
N |
H |
303.1 |
23.0 |
| HA |
CA |
N |
H2 |
177.9 |
216.4 |
| N |
CA |
HA |
C |
242.2 |
241.3 |
| N |
CA |
HA |
CB |
122.7 |
121.1 |
| C |
CA |
HA |
CB |
240.5 |
239.8 |
| HA |
CA |
C |
O |
200.8 |
210.0 |
| HA |
CA |
C |
OXT |
16.2 |
29.7 |
| HA |
CA |
CB |
CG |
287.1 |
320.0 |
| HA |
CA |
CB |
HB2 |
52.3 |
81.1 |
| HA |
CA |
CB |
HB3 |
161.8 |
196.9 |
| O |
C |
CA |
CB |
82.6 |
88.9 |
| O |
C |
CA |
HA |
200.8 |
210.0 |
| CA |
C |
O |
OXT |
174.9 |
179.7 |
| O |
C |
OXT |
HXT |
354.9 |
0.1 |
| OXT |
C |
CA |
CB |
258.0 |
268.6 |
| OXT |
C |
CA |
HA |
16.2 |
29.7 |
| CA |
C |
OXT |
O |
185.1 |
180.3 |
| CG |
CB |
CA |
HA |
287.1 |
320.0 |
| CA |
CB |
CG |
HB2 |
125.2 |
122.5 |
| CA |
CB |
CG |
HB3 |
234.7 |
236.7 |
| HB2 |
CB |
CG |
HB3 |
109.5 |
114.2 |
| CD1 |
CG |
CB |
CD2 |
173.4 |
180.0 |
| CB |
CG |
CD1 |
CE1 |
188.0 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
8.0 |
0.0 |
| CB |
CG |
CD2 |
CE2 |
172.4 |
180.0 |
| CB |
CG |
CD2 |
HD2 |
352.4 |
359.9 |
| HB2 |
CB |
CA |
HA |
52.3 |
81.1 |
| CA |
CB |
HB2 |
CG |
233.6 |
236.0 |
| CA |
CB |
HB2 |
HB3 |
116.8 |
118.9 |
| CG |
CB |
HB2 |
HB3 |
243.2 |
242.9 |
| HB2 |
CB |
CG |
CD1 |
294.8 |
147.5 |
| HB2 |
CB |
CG |
CD2 |
121.4 |
327.6 |
| HB3 |
CB |
CA |
HA |
161.8 |
196.9 |
| CA |
CB |
HB3 |
CG |
126.4 |
125.0 |
| CA |
CB |
HB3 |
HB2 |
243.3 |
241.0 |
| CG |
CB |
HB3 |
HB2 |
116.8 |
116.0 |
| HB3 |
CB |
CG |
CD1 |
185.3 |
33.4 |
| HB3 |
CB |
CG |
CD2 |
11.9 |
213.4 |
| CD1 |
CG |
CB |
HB2 |
294.8 |
147.5 |
| CD1 |
CG |
CB |
HB3 |
185.3 |
33.4 |
| CB |
CG |
CD1 |
CD2 |
186.7 |
180.0 |
| CD1 |
CG |
CD2 |
CE2 |
358.7 |
0.0 |
| CD1 |
CG |
CD2 |
HD2 |
178.8 |
180.0 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
| CG |
CD1 |
CE1 |
CZ |
0.1 |
0.0 |
| CG |
CD1 |
CE1 |
HE1 |
180.1 |
180.0 |
| CD2 |
CG |
CB |
HB2 |
121.4 |
327.6 |
| CD2 |
CG |
CB |
HB3 |
11.9 |
213.4 |
| CB |
CG |
CD2 |
CD1 |
173.6 |
180.0 |
| CD2 |
CG |
CD1 |
CE1 |
1.3 |
360.0 |
| CD2 |
CG |
CD1 |
HD1 |
181.3 |
180.0 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.1 |
| CG |
CD2 |
CE2 |
CZ |
359.8 |
360.0 |
| CG |
CD2 |
CE2 |
HE2 |
179.8 |
179.9 |
| CE1 |
CD1 |
CG |
CD2 |
1.3 |
360.0 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.0 |
| CD1 |
CE1 |
CZ |
CE2 |
358.5 |
0.0 |
| CD1 |
CE1 |
CZ |
N1 |
171.5 |
180.0 |
| HD1 |
CD1 |
CG |
CD2 |
181.3 |
180.0 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
180.0 |
| HD1 |
CD1 |
CE1 |
CZ |
180.1 |
180.0 |
| HD1 |
CD1 |
CE1 |
HE1 |
0.1 |
360.0 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
179.9 |
| CE1 |
CZ |
CE2 |
CD2 |
1.5 |
360.0 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
N1 |
188.5 |
180.0 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
180.1 |
| HD2 |
CD2 |
CE2 |
CZ |
179.8 |
180.1 |
| HD2 |
CD2 |
CE2 |
HE2 |
359.8 |
0.0 |
| CZ |
CE1 |
CD1 |
HD1 |
180.1 |
180.0 |
| CD1 |
CE1 |
CZ |
HE1 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
1.5 |
360.0 |
| CE1 |
CZ |
CE2 |
HE2 |
181.5 |
180.0 |
| CE2 |
CZ |
CE1 |
N1 |
187.1 |
180.0 |
| CE1 |
CZ |
N1 |
O1 |
188.4 |
180.0 |
| CE1 |
CZ |
N1 |
O2 |
8.6 |
0.1 |
| HE1 |
CE1 |
CD1 |
HD1 |
0.1 |
360.0 |
| CD1 |
CE1 |
HE1 |
CZ |
180.0 |
180.0 |
| HE1 |
CE1 |
CZ |
CE2 |
178.5 |
180.0 |
| HE1 |
CE1 |
CZ |
N1 |
351.4 |
360.0 |
| CZ |
CE2 |
CD2 |
HD2 |
179.8 |
180.1 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
179.9 |
| CE2 |
CZ |
CE1 |
HE1 |
178.5 |
180.0 |
| CE1 |
CZ |
CE2 |
N1 |
173.1 |
180.0 |
| CE2 |
CZ |
N1 |
O1 |
1.1 |
359.9 |
| CE2 |
CZ |
N1 |
O2 |
181.4 |
180.0 |
| HE2 |
CE2 |
CD2 |
HD2 |
359.8 |
0.0 |
| CD2 |
CE2 |
HE2 |
CZ |
180.0 |
180.0 |
| HE2 |
CE2 |
CZ |
N1 |
8.5 |
0.1 |
| N1 |
CZ |
CE1 |
HE1 |
351.4 |
360.0 |
| CE1 |
CZ |
N1 |
CE2 |
187.3 |
180.0 |
| N1 |
CZ |
CE2 |
HE2 |
8.5 |
0.1 |
| O1 |
N1 |
CZ |
O2 |
179.7 |
179.9 |
| CZ |
N1 |
O1 |
O2 |
180.3 |
180.1 |
| CZ |
N1 |
O2 |
O1 |
179.7 |
179.9 |