PDB Chemical Component PPK
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PPK
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O1G |
PG |
1.482 |
1.611 |
| O1G |
H1G |
0.951 |
0.967 |
| PG |
O2G |
1.445 |
1.609 |
| PG |
O3G |
1.512 |
1.479 |
| PG |
N3B |
1.652 |
1.683 |
| O2G |
H2G |
0.951 |
0.966 |
| N3B |
PB |
1.543 |
1.682 |
| N3B |
H3B |
1.020 |
1.009 |
| PB |
O1B |
1.485 |
1.608 |
| PB |
O2B |
1.479 |
1.479 |
| PB |
O3A |
1.612 |
1.611 |
| O1B |
H1B |
0.950 |
0.966 |
| O3A |
PA |
1.606 |
1.610 |
| PA |
O1A |
1.559 |
1.610 |
| PA |
O2A |
1.520 |
1.610 |
| PA |
O4A |
1.540 |
1.479 |
| O1A |
H1A |
0.949 |
0.966 |
| O2A |
H2A |
0.949 |
0.966 |
Bond Angles for PPK
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| PG |
O1G |
H1G |
107.1 |
106.8 |
| O1G |
PG |
O2G |
107.2 |
109.4 |
| O1G |
PG |
O3G |
111.4 |
109.5 |
| O1G |
PG |
N3B |
113.1 |
109.5 |
| O2G |
PG |
O3G |
115.1 |
109.5 |
| O2G |
PG |
N3B |
117.1 |
109.5 |
| PG |
O2G |
H2G |
107.2 |
106.9 |
| O3G |
PG |
N3B |
92.4 |
109.5 |
| PG |
N3B |
PB |
134.9 |
106.7 |
| PG |
N3B |
H3B |
103.5 |
106.7 |
| PB |
N3B |
H3B |
103.5 |
106.7 |
| N3B |
PB |
O1B |
109.0 |
109.5 |
| N3B |
PB |
O2B |
105.6 |
109.5 |
| N3B |
PB |
O3A |
112.1 |
109.4 |
| O1B |
PB |
O2B |
118.3 |
109.5 |
| O1B |
PB |
O3A |
111.8 |
109.5 |
| PB |
O1B |
H1B |
109.1 |
106.9 |
| O2B |
PB |
O3A |
99.7 |
109.4 |
| PB |
O3A |
PA |
124.8 |
106.8 |
| O3A |
PA |
O1A |
110.7 |
109.5 |
| O3A |
PA |
O2A |
111.1 |
109.5 |
| O3A |
PA |
O4A |
109.0 |
109.4 |
| O1A |
PA |
O2A |
107.0 |
109.4 |
| O1A |
PA |
O4A |
107.2 |
109.5 |
| PA |
O1A |
H1A |
110.7 |
106.8 |
| O2A |
PA |
O4A |
111.7 |
109.5 |
| PA |
O2A |
H2A |
111.1 |
106.9 |
Torsion Angles for PPK
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2G |
PG |
O1G |
O3G |
126.8 |
240.0 |
| O2G |
PG |
O1G |
N3B |
229.4 |
120.0 |
| O1G |
PG |
O2G |
H2G |
180.0 |
300.0 |
| O3G |
PG |
O1G |
N3B |
102.6 |
240.0 |
| O1G |
PG |
N3B |
PB |
261.0 |
180.0 |
| O1G |
PG |
N3B |
H3B |
135.7 |
293.7 |
| H1G |
O1G |
PG |
O2G |
180.0 |
300.0 |
| H1G |
O1G |
PG |
O3G |
53.2 |
60.0 |
| H1G |
O1G |
PG |
N3B |
310.6 |
180.0 |
| O2G |
PG |
O1G |
H1G |
180.0 |
300.0 |
| O1G |
PG |
O2G |
O3G |
235.4 |
120.0 |
| O1G |
PG |
O2G |
N3B |
128.4 |
240.0 |
| O3G |
PG |
O2G |
N3B |
252.9 |
120.0 |
| O2G |
PG |
N3B |
PB |
26.4 |
60.0 |
| O2G |
PG |
N3B |
H3B |
261.1 |
173.8 |
| O3G |
PG |
O1G |
H1G |
53.2 |
60.0 |
| O1G |
PG |
O3G |
O2G |
122.3 |
240.0 |
| O1G |
PG |
O3G |
N3B |
243.9 |
120.0 |
| O2G |
PG |
O3G |
N3B |
121.6 |
240.0 |
| O3G |
PG |
O2G |
H2G |
304.6 |
180.1 |
| O3G |
PG |
N3B |
PB |
146.4 |
300.0 |
| O3G |
PG |
N3B |
H3B |
21.1 |
53.7 |
| N3B |
PG |
O1G |
H1G |
310.6 |
180.0 |
| O1G |
PG |
N3B |
O2G |
234.6 |
119.9 |
| O1G |
PG |
N3B |
O3G |
114.6 |
240.0 |
| O2G |
PG |
N3B |
O3G |
240.0 |
120.1 |
| N3B |
PG |
O2G |
H2G |
51.6 |
60.0 |
| PB |
N3B |
PG |
H3B |
125.3 |
246.3 |
| PG |
N3B |
PB |
O1B |
185.9 |
299.9 |
| PG |
N3B |
PB |
O2B |
314.0 |
60.1 |
| PG |
N3B |
PB |
O3A |
61.6 |
180.0 |
| H2G |
O2G |
PG |
O3G |
304.6 |
180.1 |
| H2G |
O2G |
PG |
N3B |
51.6 |
60.0 |
| PG |
N3B |
PB |
H3B |
234.7 |
113.7 |
| O1B |
PB |
N3B |
O2B |
231.9 |
239.9 |
| O1B |
PB |
N3B |
O3A |
124.3 |
120.0 |
| N3B |
PB |
O1B |
H1B |
180.0 |
300.1 |
| O2B |
PB |
N3B |
O3A |
252.4 |
240.1 |
| N3B |
PB |
O3A |
PA |
300.6 |
180.0 |
| PG |
N3B |
H3B |
PB |
143.5 |
246.3 |
| H3B |
N3B |
PB |
O1B |
311.1 |
186.2 |
| H3B |
N3B |
PB |
O2B |
79.3 |
306.3 |
| H3B |
N3B |
PB |
O3A |
186.8 |
66.2 |
| O1B |
PB |
N3B |
H3B |
311.1 |
186.2 |
| N3B |
PB |
O1B |
O2B |
120.6 |
120.1 |
| N3B |
PB |
O1B |
O3A |
235.5 |
240.0 |
| O2B |
PB |
O1B |
O3A |
114.9 |
120.0 |
| O1B |
PB |
O3A |
PA |
177.8 |
60.0 |
| O2B |
PB |
N3B |
H3B |
79.3 |
306.3 |
| N3B |
PB |
O2B |
O1B |
237.7 |
239.9 |
| N3B |
PB |
O2B |
O3A |
116.4 |
119.9 |
| O1B |
PB |
O2B |
O3A |
238.7 |
240.0 |
| O2B |
PB |
O1B |
H1B |
59.4 |
180.0 |
| O2B |
PB |
O3A |
PA |
51.9 |
300.0 |
| O3A |
PB |
N3B |
H3B |
186.8 |
66.2 |
| N3B |
PB |
O3A |
O1B |
122.8 |
120.0 |
| N3B |
PB |
O3A |
O2B |
248.7 |
240.0 |
| O1B |
PB |
O3A |
O2B |
125.9 |
120.0 |
| O3A |
PB |
O1B |
H1B |
304.5 |
60.0 |
| PB |
O3A |
PA |
O1A |
86.6 |
180.0 |
| PB |
O3A |
PA |
O2A |
327.8 |
300.0 |
| PB |
O3A |
PA |
O4A |
204.3 |
60.0 |
| H1B |
O1B |
PB |
O2B |
59.4 |
180.0 |
| H1B |
O1B |
PB |
O3A |
304.5 |
60.0 |
| O1A |
PA |
O3A |
O2A |
118.8 |
240.1 |
| O1A |
PA |
O3A |
O4A |
242.3 |
120.0 |
| O3A |
PA |
O1A |
H1A |
180.0 |
180.1 |
| O2A |
PA |
O3A |
O4A |
123.5 |
240.0 |
| O3A |
PA |
O2A |
H2A |
180.0 |
300.0 |
| O3A |
PA |
O1A |
O2A |
238.8 |
120.0 |
| O3A |
PA |
O1A |
O4A |
118.8 |
240.0 |
| O2A |
PA |
O1A |
O4A |
240.0 |
120.0 |
| O1A |
PA |
O2A |
H2A |
59.1 |
60.0 |
| O3A |
PA |
O2A |
O1A |
120.9 |
240.0 |
| O3A |
PA |
O2A |
O4A |
238.0 |
120.0 |
| O1A |
PA |
O2A |
O4A |
117.1 |
240.0 |
| O2A |
PA |
O1A |
H1A |
301.2 |
60.1 |
| O3A |
PA |
O4A |
O1A |
240.1 |
120.0 |
| O3A |
PA |
O4A |
O2A |
123.2 |
240.0 |
| O1A |
PA |
O4A |
O2A |
243.0 |
120.0 |
| O4A |
PA |
O1A |
H1A |
61.2 |
300.0 |
| O4A |
PA |
O2A |
H2A |
302.0 |
180.0 |
| H1A |
O1A |
PA |
O2A |
301.2 |
60.1 |
| H1A |
O1A |
PA |
O4A |
61.2 |
300.0 |
| H2A |
O2A |
PA |
O4A |
302.0 |
180.0 |