PDB Chemical Component PPG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PPG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.386 1.318
N1 C6 1.355 1.319
C2 C2A 1.498 1.508
C2 C3 1.406 1.387
C3 O3 1.314 1.359
C3 C4 1.453 1.391
C4 C4A 1.570 1.507
C4 C5 1.455 1.386
C4A N4A 1.436 1.465
C5 C6 1.355 1.382
C5 C5A 1.540 1.508
C5A OP4 1.428 1.429
OP4 P 1.652 1.610
P OP1 1.505 1.480
P OP2 1.454 1.610
P OP3 1.475 1.609
N4A CAI 1.341 1.304
CAI CBC 1.400 1.488
CAI CBI 1.395 1.466
CBC O2B 1.293 1.213
CBC O3B 1.319 1.346
CBI CGI 1.410 1.343
CGI OET 1.414 1.350
OET CEI 1.446 1.429
CEI CFI 1.542 1.530
CFI NI 1.465 1.469
C2A H2A1 1.100 1.090
C2A H2A2 1.100 1.089
C2A H2A3 1.100 1.090
O3 HO3 0.950 0.967
C4A H4A1 1.100 1.090
C4A H4A2 1.100 1.090
C6 H6 1.080 1.080
C5A H5A1 1.100 1.089
C5A H5A2 1.100 1.090
OP2 HOP2 0.950 0.966
OP3 HOP3 0.950 0.967
O3B HOB3 0.950 0.967
CBI HBI 1.080 1.080
CGI HGI 1.080 1.079
CEI HEI1 1.100 1.091
CEI HEI2 1.100 1.090
CFI HFI1 1.100 1.090
CFI HFI2 1.100 1.090
NI HNI1 1.000 1.009
NI HNI2 1.000 1.009

Bond Angles for PPG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 125.9 121.8
N1 C2 C2A 115.8 119.6
N1 C2 C3 117.8 120.7
N1 C6 C5 118.8 120.8
N1 C6 H6 120.6 119.6
C2A C2 C3 126.3 119.7
C2 C2A H2A1 109.5 109.4
C2 C2A H2A2 109.5 109.4
C2 C2A H2A3 109.5 109.4
C2 C3 O3 119.1 120.5
C2 C3 C4 118.2 119.0
O3 C3 C4 122.6 120.5
C3 O3 HO3 109.5 114.0
C3 C4 C4A 119.6 120.8
C3 C4 C5 119.0 118.4
C4A C4 C5 121.1 120.8
C4 C4A N4A 108.6 109.4
C4 C4A H4A1 109.7 109.5
C4 C4A H4A2 109.7 109.5
C4 C5 C6 120.2 119.3
C4 C5 C5A 117.3 120.4
C4A N4A CAI 127.0 120.0
N4A C4A H4A1 109.7 109.5
N4A C4A H4A2 109.7 109.4
C6 C5 C5A 122.4 120.4
C5 C6 H6 120.6 119.6
C5 C5A OP4 111.5 109.4
C5 C5A H5A1 109.0 109.4
C5 C5A H5A2 108.9 109.4
C5A OP4 P 120.6 123.0
OP4 C5A H5A1 109.0 109.5
OP4 C5A H5A2 109.0 109.5
OP4 P OP1 103.0 109.4
OP4 P OP2 109.6 109.5
OP4 P OP3 107.8 109.5
OP1 P OP2 110.0 109.4
OP1 P OP3 115.3 109.5
OP2 P OP3 110.7 109.5
P OP2 HOP2 109.5 114.0
P OP3 HOP3 109.5 114.0
N4A CAI CBC 116.0 120.0
N4A CAI CBI 121.7 120.0
CBC CAI CBI 121.9 120.0
CAI CBC O2B 118.9 120.0
CAI CBC O3B 120.6 119.9
CAI CBI CGI 118.8 120.0
CAI CBI HBI 120.6 120.0
O2B CBC O3B 120.4 120.0
CBC O3B HOB3 109.5 117.0
CBI CGI OET 118.7 120.0
CGI CBI HBI 120.6 120.0
CBI CGI HGI 120.6 120.0
CGI OET CEI 109.4 117.0
OET CGI HGI 120.7 120.0
OET CEI CFI 112.0 109.5
OET CEI HEI1 108.8 109.5
OET CEI HEI2 108.8 109.5
CEI CFI NI 110.2 109.5
CFI CEI HEI1 108.9 109.5
CFI CEI HEI2 108.8 109.5
CEI CFI HFI1 109.3 109.5
CEI CFI HFI2 109.3 109.4
NI CFI HFI1 109.3 109.5
NI CFI HFI2 109.3 109.5
CFI NI HNI1 109.5 111.0
CFI NI HNI2 109.5 111.0
H2A1 C2A H2A2 109.5 109.5
H2A1 C2A H2A3 109.4 109.5
H2A2 C2A H2A3 109.5 109.5
H4A1 C4A H4A2 109.5 109.5
H5A1 C5A H5A2 109.5 109.5
HEI1 CEI HEI2 109.5 109.4
HFI1 CFI HFI2 109.5 109.4
HNI1 NI HNI2 109.5 111.0

Torsion Angles for PPG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 C5 2.0 0.1
C2 N1 C6 H6 182.0 180.0
C2A C2 N1 C3 181.5 180.1
N1 C2 C2A H2A1 360.0 90.0
N1 C2 C2A H2A2 120.0 210.0
N1 C2 C2A H2A3 240.0 329.9
N1 C2 C3 O3 177.1 180.1
N1 C2 C3 C4 359.8 0.0
C6 N1 C2 C2A 180.0 180.0
C6 N1 C2 C3 358.6 359.9
C4 C5 C6 N1 359.2 359.9
N1 C6 C5 C5A 174.6 180.0
C5 C6 N1 H6 180.0 180.1
C2A C2 N1 C6 180.0 180.0
N1 C2 C2A C3 178.4 179.9
C2A C2 C3 O3 355.4 0.0
C2A C2 C3 C4 178.2 180.0
H2A1 C2A C2 H2A2 240.0 240.0
H2A1 C2A C2 H2A3 120.0 120.0
H2A2 C2A C2 H2A3 240.0 240.0
C3 C2 N1 C6 358.6 359.9
N1 C2 C3 C2A 181.7 180.1
C3 C2 C2A H2A1 181.6 270.0
C3 C2 C2A H2A2 301.7 30.0
C3 C2 C2A H2A3 61.6 150.0
O3 C3 C2 C4 177.3 180.1
C2 C3 O3 HO3 180.0 90.0
C2 C3 C4 C4A 187.6 180.0
C2 C3 C4 C5 1.1 0.0
C2 C3 O3 C4 182.9 179.9
O3 C3 C4 C4A 10.5 360.0
O3 C3 C4 C5 184.0 179.9
C2 C3 C4 O3 177.1 180.1
C4 C3 O3 HO3 357.2 270.0
C4A C4 C3 C5 186.5 180.0
C3 C4 C4A N4A 321.6 85.7
C3 C4 C4A H4A1 81.5 205.7
C3 C4 C4A H4A2 201.7 325.7
C3 C4 C5 C6 359.4 0.0
C3 C4 C5 C5A 183.7 180.0
C3 C4 C4A C5 173.3 180.0
C4A C4 C5 C6 172.8 180.0
C4A C4 C5 C5A 357.1 360.0
C4 C4A N4A CAI 186.3 242.8
N4A C4A C4 H4A1 240.1 240.0
N4A C4A C4 H4A2 119.9 119.9
H4A1 C4A C4 H4A2 239.7 239.9
N1 C6 C5 C4 359.2 359.9
C3 C4 C5 C4A 186.6 180.0
C5 C4 C4A N4A 148.3 265.7
C5 C4 C4A H4A1 268.1 25.7
C5 C4 C4A H4A2 28.4 145.7
C6 C5 C4 C5A 175.7 180.0
C4 C5 C6 H6 179.2 180.1
C4 C5 C5A OP4 78.6 185.0
C4 C5 C5A H5A1 198.9 304.9
C4 C5 C5A H5A2 318.3 65.0
N4A C4A C4 C5 148.3 265.7
C4 C4A N4A H4A1 119.9 120.0
C4 C4A N4A H4A2 240.1 240.0
C4A N4A CAI CBC 202.8 186.3
C4A N4A CAI CBI 30.3 6.4
H4A1 C4A N4A H4A2 120.3 120.0
N1 C6 C5 H6 180.0 179.9
C4 C5 C6 C5A 184.6 180.0
C6 C5 C5A OP4 263.1 5.0
C6 C5 C5A H5A1 23.4 124.9
C6 C5 C5A H5A2 142.8 245.0
C4 C5 C5A C6 175.6 180.0
C5A C5 C6 H6 354.6 0.1
C5 C5A OP4 P 201.5 175.0
OP4 C5A C5 H5A1 239.7 240.1
OP4 C5A C5 H5A2 120.3 120.0
H5A1 C5A C5 H5A2 240.6 239.9
C5 C5A OP4 H5A1 120.3 119.9
C5 C5A OP4 H5A2 239.7 240.0
C5A OP4 P OP1 191.5 304.8
C5A OP4 P OP2 74.5 64.7
C5A OP4 P OP3 313.9 184.8
H5A1 C5A OP4 H5A2 119.4 120.1
P OP4 C5A H5A1 81.2 55.1
P OP4 C5A H5A2 321.8 295.0
OP1 P OP4 OP2 117.0 240.1
OP1 P OP4 OP3 237.6 120.0
OP2 P OP4 OP3 120.6 240.0
OP4 P OP2 HOP2 112.5 60.1
OP4 P OP3 HOP3 245.6 180.0
OP4 P OP1 OP2 243.3 120.0
OP4 P OP1 OP3 117.2 240.0
OP2 P OP1 OP3 233.9 120.0
OP1 P OP2 HOP2 0.0 180.0
OP1 P OP3 HOP3 0.0 60.1
OP4 P OP2 OP1 112.5 240.1
OP4 P OP2 OP3 241.2 120.1
OP1 P OP2 OP3 128.6 240.0
OP2 P OP3 HOP3 125.7 300.1
OP4 P OP3 OP1 245.6 120.0
OP4 P OP3 OP2 119.9 240.0
OP1 P OP3 OP2 234.3 120.0
OP3 P OP2 HOP2 231.4 300.0
CAI N4A C4A H4A1 66.4 122.7
CAI N4A C4A H4A2 306.1 2.7
CBC CAI N4A CBI 172.5 179.9
N4A CAI CBC O2B 351.6 186.1
N4A CAI CBC O3B 172.0 6.1
N4A CAI CBI CGI 122.6 186.3
N4A CAI CBI HBI 302.6 6.2
N4A CAI CBC CBI 187.5 180.1
CBC CAI CBI CGI 310.5 6.4
CBC CAI CBI HBI 130.5 186.3
O2B CBC CAI O3B 179.7 179.9
CAI CBC O3B HOB3 179.7 179.9
N4A CAI CBI CBC 172.1 179.9
CBI CAI CBC O2B 164.1 6.0
CBI CAI CBC O3B 344.5 186.0
CAI CBI CGI OET 170.2 186.6
CGI CBI CAI HBI 180.0 180.1
CAI CBI CGI HGI 350.2 6.6
O2B CBC CAI CBI 164.1 6.0
CAI CBC O2B O3B 180.3 180.1
O2B CBC O3B HOB3 0.0 0.0
O3B CBC CAI CBI 344.5 186.0
CAI CBC O3B O2B 179.7 179.9
CAI CBI CGI HBI 180.0 179.9
CBI CGI OET CEI 182.4 185.0
OET CGI CBI HGI 180.0 180.1
OET CGI CBI HBI 350.2 6.7
CBI CGI OET HGI 180.0 179.9
CGI OET CEI CFI 256.8 184.9
CGI OET CEI HEI1 17.2 304.9
CGI OET CEI HEI2 136.5 64.9
CEI OET CGI HGI 2.4 5.1
OET CEI CFI NI 64.2 63.7
CFI CEI OET HEI1 239.6 240.0
CFI CEI OET HEI2 120.4 120.1
OET CEI CFI HFI1 184.4 183.7
OET CEI CFI HFI2 304.1 303.6
HEI1 CEI OET HEI2 240.7 240.1
OET CEI CFI HEI1 120.4 120.0
OET CEI CFI HEI2 239.6 240.0
NI CFI CEI HFI1 239.9 239.9
NI CFI CEI HFI2 120.1 120.0
CEI CFI NI HNI1 180.0 184.8
CEI CFI NI HNI2 300.0 308.8
HEI1 CEI CFI HEI2 119.3 120.0
HFI1 CFI CEI HFI2 240.2 240.1
NI CFI CEI HEI1 303.9 303.6
NI CFI CEI HEI2 184.6 183.7
CEI CFI NI HFI1 120.1 120.1
CEI CFI NI HFI2 239.9 240.0
HFI1 CFI NI HFI2 119.8 120.0
HNI1 NI CFI HNI2 240.0 236.0
H2A1 C2A C2 C3 181.6 270.0
C2 C2A H2A1 H2A2 120.0 120.0
C2 C2A H2A1 H2A3 240.0 240.0
H2A2 C2A H2A1 H2A3 120.0 120.1
H2A2 C2A C2 C3 301.7 30.0
C2 C2A H2A2 H2A1 240.0 240.0
C2 C2A H2A2 H2A3 120.0 119.9
H2A1 C2A H2A2 H2A3 240.0 239.9
H2A3 C2A C2 C3 61.6 150.0
C2 C2A H2A3 H2A1 120.0 120.0
C2 C2A H2A3 H2A2 240.0 240.1
H2A1 C2A H2A3 H2A2 120.0 120.1
HO3 O3 C3 C4 357.2 270.0
H4A1 C4A C4 C5 268.1 25.7
C4 C4A H4A1 N4A 240.8 240.0
C4 C4A H4A1 H4A2 120.4 120.1
H4A1 C4A N4A CAI 66.4 122.7
N4A C4A H4A1 H4A2 239.6 240.0
H4A2 C4A C4 C5 28.4 145.7
C4 C4A H4A2 N4A 119.2 119.9
C4 C4A H4A2 H4A1 239.6 239.9
H4A2 C4A N4A CAI 306.1 2.7
N4A C4A H4A2 H4A1 120.4 120.0
N1 C6 H6 C5 180.0 180.1
H6 C6 C5 C5A 354.6 0.1
C5 C5A H5A1 OP4 238.2 240.1
C5 C5A H5A1 H5A2 119.0 120.0
H5A1 C5A OP4 P 81.2 55.1
OP4 C5A H5A1 H5A2 240.9 239.9
C5 C5A H5A2 OP4 121.8 120.0
C5 C5A H5A2 H5A1 240.9 240.0
H5A2 C5A OP4 P 321.8 295.0
OP4 C5A H5A2 H5A1 119.1 120.1
HOP2 OP2 P OP3 231.4 300.0
CAI CBI HBI CGI 180.0 180.1
HBI CBI CGI OET 350.2 6.7
HBI CBI CGI HGI 170.2 186.6
CBI CGI HGI OET 180.0 180.1
HGI CGI CBI HBI 170.2 186.6
HGI CGI OET CEI 2.4 5.1
OET CEI HEI1 CFI 237.7 240.0
OET CEI HEI1 HEI2 118.8 120.0
HEI1 CEI CFI NI 303.9 303.6
CFI CEI HEI1 HEI2 241.1 240.0
HEI1 CEI CFI HFI1 64.0 63.7
HEI1 CEI CFI HFI2 183.8 183.6
OET CEI HEI2 CFI 122.3 120.1
OET CEI HEI2 HEI1 241.2 240.0
HEI2 CEI CFI NI 184.6 183.7
CFI CEI HEI2 HEI1 118.9 120.0
HEI2 CEI CFI HFI1 304.7 303.8
HEI2 CEI CFI HFI2 64.5 63.7
CEI CFI HFI1 NI 239.3 240.0
HFI1 CFI CEI HEI1 64.0 63.7
HFI1 CFI CEI HEI2 304.7 303.8
CEI CFI HFI1 HFI2 119.7 120.0
NI CFI HFI1 HFI2 240.4 240.0
HFI1 CFI NI HNI1 59.9 64.7
HFI1 CFI NI HNI2 179.9 188.7
CEI CFI HFI2 NI 120.7 120.0
HFI2 CFI CEI HEI1 183.8 183.6
HFI2 CFI CEI HEI2 64.5 63.7
CEI CFI HFI2 HFI1 240.3 240.0
NI CFI HFI2 HFI1 119.7 120.0
HFI2 CFI NI HNI1 300.1 304.7
HFI2 CFI NI HNI2 60.1 68.8
HNI1 NI CFI HFI1 59.9 64.7
HNI1 NI CFI HFI2 300.1 304.7
CFI NI HNI1 HNI2 120.0 124.1
HNI2 NI CFI HFI1 179.9 188.7
HNI2 NI CFI HFI2 60.1 68.8
CFI NI HNI2 HNI1 240.0 236.0