PDB Chemical Component PPE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PPE

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.369 1.319
N1 C6 1.347 1.318
N1 HN1 1.020 0.970
C2 C2A 1.516 1.506
C2 C3 1.445 1.387
C2A H2A1 1.115 1.090
C2A H2A2 1.115 1.091
C2A H2A3 1.115 1.090
C3 O3 1.360 1.359
C3 C4 1.392 1.391
O3 HO3 0.950 0.967
C4 C4A 1.523 1.507
C4 C5 1.425 1.385
C4A NA 1.523 1.469
C4A H4A1 1.115 1.090
C4A H4A2 1.115 1.090
C5 C6 1.379 1.384
C5 C5A 1.532 1.507
C6 H6 1.104 1.079
C5A OP4 1.379 1.430
C5A H5A1 1.115 1.090
C5A H5A2 1.115 1.090
OP4 P 1.604 1.610
P OP1 1.441 1.610
P OP2 1.516 1.610
P OP3 1.511 1.480
OP2 HOP2 0.951 0.967
OP3 HOP3 0.951  
NA CAA 1.503 1.469
NA HNA 1.019 1.009
CAA CBA 1.522 1.530
CAA CA 1.538 1.507
CAA HAA 1.115 1.090
CBA CGA 1.520 1.530
CBA HBA1 1.115 1.089
CBA HBA2 1.116 1.090
CGA CDA 1.517 1.508
CGA HGA1 1.114 1.090
CGA HGA2 1.116 1.090
CDA OE1 1.211 1.342
CDA OE2 1.245 1.208
OE2 HOE2 0.950  
CA OA 1.363 1.341
CA OXT 1.319 1.208
OXT HXT 0.949  

Bond Angles for PPE

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 121.6 121.8
C2 N1 HN1 120.1 119.1
N1 C2 C2A 108.9 119.6
N1 C2 C3 118.4 120.7
C6 N1 HN1 118.4 119.1
N1 C6 C5 118.4 120.9
N1 C6 H6 119.7 119.6
C2A C2 C3 132.6 119.7
C2 C2A H2A1 108.9 109.4
C2 C2A H2A2 112.4 109.5
C2 C2A H2A3 112.4 109.6
C2 C3 O3 111.4 120.5
C2 C3 C4 123.5 119.1
H2A1 C2A H2A2 112.4 109.5
H2A1 C2A H2A3 112.4 109.5
H2A2 C2A H2A3 98.0 109.4
O3 C3 C4 125.1 120.4
C3 O3 HO3 111.4 106.8
C3 C4 C4A 121.9 120.8
C3 C4 C5 111.8 118.4
C4A C4 C5 126.4 120.8
C4 C4A NA 102.6 109.5
C4 C4A H4A1 114.8 109.5
C4 C4A H4A2 114.8 109.5
C4 C5 C6 126.4 119.2
C4 C5 C5A 122.5 120.4
NA C4A H4A1 114.8 109.5
NA C4A H4A2 114.8 109.5
C4A NA CAA 110.2 106.6
C4A NA HNA 111.9 106.6
H4A1 C4A H4A2 95.6 109.5
C6 C5 C5A 111.1 120.4
C5 C6 H6 121.9 119.5
C5 C5A OP4 118.3 109.5
C5 C5A H5A1 109.1 109.5
C5 C5A H5A2 109.1 109.5
OP4 C5A H5A1 109.0 109.4
OP4 C5A H5A2 109.0 109.4
C5A OP4 P 123.1 106.8
H5A1 C5A H5A2 101.0 109.4
OP4 P OP1 112.8 109.4
OP4 P OP2 104.4 109.5
OP4 P OP3 103.0 109.5
OP1 P OP2 121.5 109.5
OP1 P OP3 103.2 109.5
OP2 P OP3 110.5 109.5
P OP2 HOP2 104.4 106.8
P OP3 HOP3 103.0  
CAA NA HNA 112.0 106.7
NA CAA CBA 111.2 109.4
NA CAA CA 110.5 109.5
NA CAA HAA 108.4 109.5
CBA CAA CA 111.6 109.5
CBA CAA HAA 107.1 109.4
CAA CBA CGA 114.5 109.5
CAA CBA HBA1 110.4 109.5
CAA CBA HBA2 110.4 109.4
CA CAA HAA 108.0 109.5
CAA CA OA 110.6 120.0
CAA CA OXT 124.6 120.0
CGA CBA HBA1 110.4 109.5
CGA CBA HBA2 110.4 109.5
CBA CGA CDA 110.4 109.4
CBA CGA HGA1 111.9 109.5
CBA CGA HGA2 111.8 109.5
HBA1 CBA HBA2 99.8 109.5
CDA CGA HGA1 111.8 109.4
CDA CGA HGA2 111.8 109.5
CGA CDA OE1 115.7 120.0
CGA CDA OE2 113.9 120.0
HGA1 CGA HGA2 98.6 109.5
OE1 CDA OE2 130.4 120.1
CDA OE2 HOE2 113.9  
OA CA OXT 124.8 120.0
CA OXT HXT 124.6  

Torsion Angles for PPE

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 HN1 180.0 180.0
C2 N1 C6 C5 0.3 0.0
C2 N1 C6 H6 180.3 180.0
C2A C2 N1 C3 180.2 179.6
N1 C2 C2A H2A1 180.0 90.0
N1 C2 C2A H2A2 305.3 210.0
N1 C2 C2A H2A3 54.7 330.0
N1 C2 C3 O3 180.0 180.0
N1 C2 C3 C4 1.6 359.4
C2 N1 C6 HN1 180.0 180.0
C6 N1 C2 C2A 179.3 179.9
C6 N1 C2 C3 359.1 0.3
C4 C5 C6 N1 359.7 360.0
N1 C6 C5 C5A 181.4 180.0
C5 C6 N1 H6 180.0 180.1
C2 N1 HN1 C6 180.0 180.0
HN1 N1 C2 C2A 359.3 359.9
HN1 N1 C2 C3 179.0 180.3
HN1 N1 C6 C5 180.3 180.0
HN1 N1 C6 H6 0.3 360.0
C2A C2 N1 C6 179.3 179.9
C2A C2 N1 HN1 359.3 359.9
N1 C2 C2A C3 179.7 180.4
C2A C2 C3 O3 359.7 0.3
C2A C2 C3 C4 181.3 179.7
H2A1 C2A C2 H2A2 234.7 240.0
H2A1 C2A C2 H2A3 125.3 120.0
H2A2 C2A C2 H2A3 250.5 240.0
C3 C2 N1 C6 359.1 0.3
C3 C2 N1 HN1 179.0 180.3
N1 C2 C3 C2A 180.3 179.6
C3 C2 C2A H2A1 0.3 269.7
C3 C2 C2A H2A2 125.5 29.7
C3 C2 C2A H2A3 235.0 149.7
O3 C3 C2 C4 178.4 180.6
C2 C3 O3 HO3 180.0 269.5
C2 C3 C4 C4A 178.8 180.3
C2 C3 C4 C5 358.5 0.6
H2A1 C2A C2 C3 0.3 269.7
C2 C2A H2A1 H2A2 125.2 120.0
C2 C2A H2A1 H2A3 234.8 239.9
H2A2 C2A H2A1 H2A3 109.5 119.9
H2A2 C2A C2 C3 125.5 29.7
C2 C2A H2A2 H2A1 236.7 240.0
C2 C2A H2A2 H2A3 118.3 120.1
H2A1 C2A H2A2 H2A3 241.6 240.0
H2A3 C2A C2 C3 235.0 149.7
C2 C2A H2A3 H2A1 123.3 120.0
C2 C2A H2A3 H2A2 241.7 240.0
H2A1 C2A H2A3 H2A2 118.4 120.0
C2 C3 O3 C4 181.7 179.4
O3 C3 C4 C4A 0.6 359.7
O3 C3 C4 C5 180.4 180.0
C2 C3 C4 O3 178.1 180.6
C4 C3 O3 HO3 358.3 90.1
C4A C4 C3 C5 180.3 179.7
C3 C4 C4A NA 326.9 270.3
C3 C4 C4A H4A1 92.2 30.3
C3 C4 C4A H4A2 201.6 150.3
C3 C4 C5 C6 0.8 359.7
C3 C4 C5 C5A 178.9 179.7
HO3 O3 C3 C4 358.3 90.1
C3 C4 C4A C5 179.7 180.3
C4A C4 C5 C6 180.6 180.0
C4A C4 C5 C5A 358.7 0.0
NA C4A C4 H4A1 234.7 240.0
NA C4A C4 H4A2 125.3 120.0
C4 C4A NA CAA 148.2 180.0
C4 C4A NA HNA 23.0 293.7
H4A1 C4A C4 H4A2 250.6 240.0
N1 C6 C5 C4 359.7 360.0
C3 C4 C5 C4A 180.3 179.7
C5 C4 C4A NA 147.2 90.0
C5 C4 C4A H4A1 272.5 210.0
C5 C4 C4A H4A2 21.9 330.0
C6 C5 C4 C5A 181.9 180.0
C4 C5 C6 H6 179.7 180.0
C4 C5 C5A OP4 21.8 180.0
C4 C5 C5A H5A1 147.1 300.0
C4 C5 C5A H5A2 256.6 60.0
NA C4A C4 C5 147.2 90.0
C4 C4A NA H4A1 125.3 120.0
C4 C4A NA H4A2 234.7 240.0
H4A1 C4A NA H4A2 109.4 120.0
CAA NA C4A HNA 125.3 246.3
C4A NA CAA CBA 51.9 155.0
C4A NA CAA CA 176.3 275.0
C4A NA CAA HAA 294.4 35.0
H4A1 C4A C4 C5 272.5 210.0
C4 C4A H4A1 NA 241.3 240.0
C4 C4A H4A1 H4A2 120.7 120.0
NA C4A H4A1 H4A2 239.3 240.0
H4A1 C4A NA CAA 22.9 60.0
H4A1 C4A NA HNA 257.6 173.7
H4A2 C4A C4 C5 21.9 330.0
C4 C4A H4A2 NA 118.7 120.0
C4 C4A H4A2 H4A1 239.3 240.0
NA C4A H4A2 H4A1 120.7 120.0
H4A2 C4A NA CAA 273.5 300.0
H4A2 C4A NA HNA 148.3 53.7
C5 C6 N1 HN1 180.3 180.0
N1 C6 C5 H6 180.0 179.9
C4 C5 C6 C5A 178.3 180.0
C6 C5 C5A OP4 200.2 360.0
C6 C5 C5A H5A1 325.4 120.0
C6 C5 C5A H5A2 74.9 240.0
C4 C5 C5A C6 181.7 180.0
C5A C5 C6 H6 1.5 0.0
OP4 C5A C5 H5A1 234.8 240.0
OP4 C5A C5 H5A2 125.3 120.0
C5 C5A OP4 P 167.0 180.0
H5A1 C5A C5 H5A2 250.5 240.0
H6 C6 N1 HN1 0.3 360.0
N1 C6 H6 C5 180.0 180.1
H6 C6 C5 C5A 1.5 0.0
C5 C5A OP4 H5A1 125.3 120.0
C5 C5A OP4 H5A2 234.7 239.9
H5A1 C5A OP4 H5A2 109.4 119.9
C5A OP4 P OP1 289.1 175.0
C5A OP4 P OP2 155.2 295.0
C5A OP4 P OP3 39.7 55.0
C5 C5A H5A1 OP4 229.5 240.0
C5 C5A H5A1 H5A2 114.8 120.1
OP4 C5A H5A1 H5A2 245.3 240.1
H5A1 C5A OP4 P 41.7 60.0
C5 C5A H5A2 OP4 130.5 120.0
C5 C5A H5A2 H5A1 245.2 240.0
OP4 C5A H5A2 H5A1 114.7 119.9
H5A2 C5A OP4 P 292.3 300.1
P OP4 C5A H5A1 41.7 60.0
P OP4 C5A H5A2 292.3 300.1
OP1 P OP4 OP2 133.9 240.0
OP1 P OP4 OP3 249.4 120.0
OP2 P OP4 OP3 115.5 240.0
OP4 P OP2 HOP2 180.0 300.0
OP4 P OP3 HOP3 180.0  
OP4 P OP1 OP2 234.9 120.0
OP4 P OP1 OP3 110.5 240.0
OP2 P OP1 OP3 235.5 120.0
OP1 P OP2 HOP2 51.1 60.0
OP1 P OP3 HOP3 297.6  
OP4 P OP2 OP1 128.8 240.0
OP4 P OP2 OP3 249.9 120.1
OP1 P OP2 OP3 121.0 240.0
OP2 P OP3 HOP3 68.9  
OP4 P OP3 OP1 242.4 120.0
OP4 P OP3 OP2 111.1 240.0
OP1 P OP3 OP2 228.7 120.0
OP3 P OP2 HOP2 290.1 180.0
HOP2 OP2 P OP3 290.1 180.0
CAA NA C4A H4A1 22.9 60.0
CAA NA C4A H4A2 273.5 300.0
C4A NA CAA HNA 234.8 113.7
CBA CAA NA CA 235.5 240.0
CBA CAA NA HAA 117.5 119.9
NA CAA CBA CGA 81.1 295.0
NA CAA CBA HBA1 206.3 55.0
NA CAA CBA HBA2 315.7 175.0
CA CAA NA HAA 241.9 239.9
NA CAA CA OA 27.4 180.0
NA CAA CA OXT 205.4 0.1
HNA NA C4A H4A1 257.6 173.7
HNA NA C4A H4A2 148.3 53.7
C4A NA HNA CAA 124.2 246.3
HNA NA CAA CBA 177.1 41.3
HNA NA CAA CA 301.5 161.3
HNA NA CAA HAA 59.6 281.3
CBA CAA NA HNA 177.1 41.3
NA CAA CBA CA 123.8 120.0
NA CAA CBA HAA 241.8 240.0
CA CAA CBA HAA 118.0 120.0
CBA CAA CA OA 151.6 300.0
CBA CAA CA OXT 329.6 120.0
CGA CBA CAA HBA1 234.7 240.0
CGA CBA CAA HBA2 125.3 120.0
CAA CBA CGA CDA 293.3 180.0
CAA CBA CGA HGA1 58.6 300.0
CAA CBA CGA HGA2 168.1 60.0
HBA1 CBA CAA HBA2 250.6 240.0
CA CAA NA HNA 301.5 161.3
NA CAA CA CBA 235.8 240.0
NA CAA CA HAA 118.3 120.1
CBA CAA CA HAA 242.5 240.0
CA CAA CBA CGA 317.2 175.0
CA CAA CBA HBA1 82.5 295.0
CA CAA CBA HBA2 191.9 55.0
OA CA CAA OXT 182.0 180.0
CAA CA OXT HXT 180.0  
HAA CAA NA HNA 59.6 281.3
NA CAA HAA CBA 120.0 119.9
NA CAA HAA CA 240.3 239.9
CBA CAA HAA CA 120.3 120.0
HAA CAA CBA CGA 199.3 55.0
HAA CAA CBA HBA1 324.5 175.0
HAA CAA CBA HBA2 74.0 295.0
HAA CAA CA OA 269.0 60.0
HAA CAA CA OXT 87.1 240.0
CGA CBA CAA CA 317.2 175.0
CGA CBA CAA HAA 199.3 55.0
CAA CBA CGA HBA1 125.3 120.0
CAA CBA CGA HBA2 234.7 240.0
HBA1 CBA CGA HBA2 109.4 120.0
CDA CGA CBA HGA1 234.7 240.1
CDA CGA CBA HGA2 125.2 120.0
CBA CGA CDA OE1 93.6 180.0
CBA CGA CDA OE2 271.5 360.0
HGA1 CGA CBA HGA2 250.5 239.9
HBA1 CBA CAA CA 82.5 295.0
HBA1 CBA CAA HAA 324.5 175.0
CAA CBA HBA1 CGA 232.4 240.0
CAA CBA HBA1 HBA2 116.2 120.0
CGA CBA HBA1 HBA2 243.8 240.0
HBA1 CBA CGA CDA 168.0 60.0
HBA1 CBA CGA HGA1 293.3 179.9
HBA1 CBA CGA HGA2 42.8 300.0
HBA2 CBA CAA CA 191.9 55.0
HBA2 CBA CAA HAA 74.0 295.0
CAA CBA HBA2 CGA 127.6 120.0
CAA CBA HBA2 HBA1 243.8 240.0
CGA CBA HBA2 HBA1 116.2 120.0
HBA2 CBA CGA CDA 58.6 300.0
HBA2 CBA CGA HGA1 183.9 59.9
HBA2 CBA CGA HGA2 293.4 180.0
CDA CGA CBA HBA1 168.0 60.0
CDA CGA CBA HBA2 58.6 300.0
CBA CGA CDA HGA1 125.3 119.9
CBA CGA CDA HGA2 234.8 240.0
HGA1 CGA CDA HGA2 109.5 120.0
OE1 CDA CGA OE2 182.1 180.0
CGA CDA OE2 HOE2 180.0  
HGA1 CGA CBA HBA1 293.3 179.9
HGA1 CGA CBA HBA2 183.9 59.9
CBA CGA HGA1 CDA 235.5 240.1
CBA CGA HGA1 HGA2 117.8 120.1
CDA CGA HGA1 HGA2 242.2 240.0
HGA1 CGA CDA OE1 328.3 60.0
HGA1 CGA CDA OE2 146.3 240.0
HGA2 CGA CBA HBA1 42.8 300.0
HGA2 CGA CBA HBA2 293.4 180.0
CBA CGA HGA2 CDA 124.4 120.0
CBA CGA HGA2 HGA1 242.2 239.9
CDA CGA HGA2 HGA1 117.8 120.0
HGA2 CGA CDA OE1 218.8 300.0
HGA2 CGA CDA OE2 36.7 120.0
OE1 CDA CGA HGA1 328.3 60.0
OE1 CDA CGA HGA2 218.8 300.0
CGA CDA OE1 OE2 177.5 180.0
OE1 CDA OE2 HOE2 357.5  
OE2 CDA CGA HGA1 146.3 240.0
OE2 CDA CGA HGA2 36.7 120.0
CGA CDA OE2 OE1 182.5 180.0
OA CA CAA HAA 269.0 60.0
CAA CA OA OXT 178.0 180.0
OA CA OXT HXT 357.7  
OXT CA CAA HAA 87.1 240.0
CAA CA OXT OA 182.3 180.0