PDB Chemical Component PP3

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PP3

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.371	1.318
N1	C6	1.355	1.319
C2	C2A	1.517	1.507
C2	C3	1.425	1.386
C2A	H2A1	1.115	1.089
C2A	H2A2	1.115	1.091
C2A	H2A3	1.115	1.090
C3	O3	1.357	1.359
C3	C4	1.405	1.392
O3	HO3	0.950	0.967
C4	C4A	1.530	1.506
C4	C5	1.435	1.384
C4A	N	1.516	1.468
C4A	H4A1	1.115	1.090
C4A	H4A2	1.116	1.090
C5	C6	1.377	1.382
C5	C5A	1.530	1.507
C6	H6	1.104	1.081
C5A	O4P	1.376	1.429
C5A	H5A1	1.115	1.090
C5A	H5A2	1.114	1.089
O4P	P	1.592	1.609
P	O1P	1.434	1.479
P	O2P	1.494	1.609
P	O3P	1.502	1.610
O2P	HOP2	0.951	0.967
O3P	HOP3	0.951	0.967
N	CA	1.495	1.469
N	HN2	1.019	1.010
CA	C	1.551	1.506
CA	CB	1.521	1.531
CA	HA	1.115	1.090
C	O	1.365	1.208
C	OXT	1.316	1.343
CB	HB1	1.115	1.088
CB	HB2	1.116	1.090
CB	HB3	1.115	1.091
OXT	HXT	0.950	0.967

Bond Angles for PP3

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	122.5	121.8
N1	C2	C2A	109.3	119.7
N1	C2	C3	118.2	120.7
N1	C6	C5	117.8	120.9
N1	C6	H6	120.4	119.5
C2A	C2	C3	132.5	119.7
C2	C2A	H2A1	109.2	109.5
C2	C2A	H2A2	112.3	109.5
C2	C2A	H2A3	112.2	109.5
C2	C3	O3	110.3	120.5
C2	C3	C4	123.6	119.1
H2A1	C2A	H2A2	112.4	109.4
H2A1	C2A	H2A3	112.3	109.5
H2A2	C2A	H2A3	98.2	109.5
O3	C3	C4	126.1	120.4
C3	O3	HO3	110.3	106.8
C3	C4	C4A	122.3	120.8
C3	C4	C5	111.9	118.4
C4A	C4	C5	125.8	120.8
C4	C4A	N	103.2	109.5
C4	C4A	H4A1	114.6	109.5
C4	C4A	H4A2	114.6	109.5
C4	C5	C6	126.0	119.2
C4	C5	C5A	123.1	120.4
N	C4A	H4A1	114.6	109.4
N	C4A	H4A2	114.6	109.5
C4A	N	CA	110.6	106.8
C4A	N	HN2	111.8	106.7
H4A1	C4A	H4A2	95.8	109.5
C6	C5	C5A	110.9	120.4
C5	C6	H6	121.8	119.6
C5	C5A	O4P	118.1	109.5
C5	C5A	H5A1	109.1	109.4
C5	C5A	H5A2	109.1	109.5
O4P	C5A	H5A1	109.1	109.4
O4P	C5A	H5A2	109.1	109.5
C5A	O4P	P	124.0	106.8
H5A1	C5A	H5A2	101.0	109.5
O4P	P	O1P	112.5	109.5
O4P	P	O2P	103.9	109.5
O4P	P	O3P	105.1	109.4
O1P	P	O2P	122.6	109.5
O1P	P	O3P	102.5	109.4
O2P	P	O3P	109.1	109.4
P	O2P	HOP2	103.9	106.8
P	O3P	HOP3	105.1	106.8
CA	N	HN2	111.8	106.7
N	CA	C	109.9	109.6
N	CA	CB	109.1	109.5
N	CA	HA	110.3	109.4
C	CA	CB	112.0	109.4
C	CA	HA	107.4	109.4
CA	C	O	111.5	120.0
CA	C	OXT	124.7	120.0
CB	CA	HA	108.2	109.5
CA	CB	HB1	109.2	109.5
CA	CB	HB2	112.4	109.5
CA	CB	HB3	112.4	109.4
O	C	OXT	123.7	120.0
C	OXT	HXT	124.8	120.0
HB1	CB	HB2	112.3	109.5
HB1	CB	HB3	112.3	109.4
HB2	CB	HB3	98.0	109.5

Torsion Angles for PP3

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	C5	0.5	359.8
C2	N1	C6	H6	180.5	180.0
C2A	C2	N1	C3	179.8	180.0
N1	C2	C2A	H2A1	180.0	270.0
N1	C2	C2A	H2A2	305.3	30.0
N1	C2	C2A	H2A3	54.7	150.0
N1	C2	C3	O3	180.1	180.0
N1	C2	C3	C4	359.7	360.0
C6	N1	C2	C2A	179.8	179.9
C6	N1	C2	C3	0.0	360.0
C4	C5	C6	N1	359.2	0.5
N1	C6	C5	C5A	179.8	179.9
C5	C6	N1	H6	180.0	179.8
C2A	C2	N1	C6	179.8	179.9
N1	C2	C2A	C3	180.2	180.0
C2A	C2	C3	O3	0.3	0.0
C2A	C2	C3	C4	180.0	180.0
H2A1	C2A	C2	H2A2	234.7	240.0
H2A1	C2A	C2	H2A3	125.2	120.0
H2A2	C2A	C2	H2A3	250.6	240.0
C3	C2	N1	C6	0.0	360.0
N1	C2	C3	C2A	179.7	180.0
C3	C2	C2A	H2A1	359.7	90.0
C3	C2	C2A	H2A2	125.1	210.0
C3	C2	C2A	H2A3	234.5	330.0
O3	C3	C2	C4	180.4	180.1
C2	C3	O3	HO3	180.0	270.0
C2	C3	C4	C4A	180.4	180.0
C2	C3	C4	C5	0.0	0.4
H2A1	C2A	C2	C3	359.7	90.0
C2	C2A	H2A1	H2A2	125.3	120.0
C2	C2A	H2A1	H2A3	234.8	240.0
H2A2	C2A	H2A1	H2A3	109.6	120.0
H2A2	C2A	C2	C3	125.1	210.0
C2	C2A	H2A2	H2A1	236.4	240.0
C2	C2A	H2A2	H2A3	118.1	120.0
H2A1	C2A	H2A2	H2A3	241.7	240.1
H2A3	C2A	C2	C3	234.5	330.0
C2	C2A	H2A3	H2A1	123.5	120.1
C2	C2A	H2A3	H2A2	241.8	240.0
H2A1	C2A	H2A3	H2A2	118.3	119.9
C2	C3	O3	C4	179.6	179.9
O3	C3	C4	C4A	0.0	359.9
O3	C3	C4	C5	179.6	180.3
C2	C3	C4	O3	180.4	180.1
C4	C3	O3	HO3	0.3	90.1
C4A	C4	C3	C5	180.4	179.6
C3	C4	C4A	N	334.2	90.1
C3	C4	C4A	H4A1	99.5	330.1
C3	C4	C4A	H4A2	208.9	210.0
C3	C4	C5	C6	0.5	359.4
C3	C4	C5	C5A	179.8	180.0
HO3	O3	C3	C4	0.3	90.1
C3	C4	C4A	C5	179.5	180.4
C4A	C4	C5	C6	180.1	179.8
C4A	C4	C5	C5A	359.4	0.4
N	C4A	C4	H4A1	234.7	119.9
N	C4A	C4	H4A2	125.3	240.0
C4	C4A	N	CA	175.6	180.0
C4	C4A	N	HN2	50.3	66.2
H4A1	C4A	C4	H4A2	250.6	120.1
N1	C6	C5	C4	359.2	0.5
C3	C4	C5	C4A	180.4	179.6
C5	C4	C4A	N	154.7	269.7
C5	C4	C4A	H4A1	280.0	149.7
C5	C4	C4A	H4A2	29.4	29.7
C6	C5	C4	C5A	180.7	179.4
C4	C5	C6	H6	179.2	180.3
C4	C5	C5A	O4P	27.5	179.4
C4	C5	C5A	H5A1	152.7	299.3
C4	C5	C5A	H5A2	262.2	59.4
N	C4A	C4	C5	154.7	269.7
C4	C4A	N	H4A1	125.3	240.0
C4	C4A	N	H4A2	234.7	120.0
H4A1	C4A	N	H4A2	109.4	240.0
CA	N	C4A	HN2	125.2	113.8
C4A	N	CA	C	179.4	210.0
C4A	N	CA	CB	56.2	90.0
C4A	N	CA	HA	297.6	330.0
H4A1	C4A	C4	C5	280.0	149.7
C4	C4A	H4A1	N	240.9	120.0
C4	C4A	H4A1	H4A2	120.5	239.9
N	C4A	H4A1	H4A2	239.5	120.0
H4A1	C4A	N	CA	50.3	300.0
H4A1	C4A	N	HN2	285.0	186.2
H4A2	C4A	C4	C5	29.4	29.7
C4	C4A	H4A2	N	119.1	240.0
C4	C4A	H4A2	H4A1	239.6	120.1
N	C4A	H4A2	H4A1	120.5	240.1
H4A2	C4A	N	CA	300.8	60.0
H4A2	C4A	N	HN2	175.6	306.2
N1	C6	C5	H6	180.0	180.2
C4	C5	C6	C5A	179.4	180.6
C6	C5	C5A	O4P	206.9	0.0
C6	C5	C5A	H5A1	332.1	119.9
C6	C5	C5A	H5A2	81.6	240.0
C4	C5	C5A	C6	180.6	179.4
C5A	C5	C6	H6	359.8	359.8
O4P	C5A	C5	H5A1	234.8	240.1
O4P	C5A	C5	H5A2	125.3	120.1
C5	C5A	O4P	P	165.7	180.0
H5A1	C5A	C5	H5A2	250.5	239.9
N1	C6	H6	C5	180.0	179.8
H6	C6	C5	C5A	359.8	359.8
C5	C5A	O4P	H5A1	125.3	119.9
C5	C5A	O4P	H5A2	234.7	240.0
H5A1	C5A	O4P	H5A2	109.4	120.1
C5A	O4P	P	O1P	287.2	59.9
C5A	O4P	P	O2P	152.4	180.0
C5A	O4P	P	O3P	37.9	300.0
C5	C5A	H5A1	O4P	229.7	240.1
C5	C5A	H5A1	H5A2	114.9	120.0
O4P	C5A	H5A1	H5A2	245.2	239.9
H5A1	C5A	O4P	P	40.5	60.1
C5	C5A	H5A2	O4P	130.3	120.0
C5	C5A	H5A2	H5A1	245.1	240.0
O4P	C5A	H5A2	H5A1	114.8	120.0
H5A2	C5A	O4P	P	291.0	300.0
P	O4P	C5A	H5A1	40.5	60.1
P	O4P	C5A	H5A2	291.0	300.0
O1P	P	O4P	O2P	134.7	239.9
O1P	P	O4P	O3P	249.3	119.9
O2P	P	O4P	O3P	114.6	240.1
O4P	P	O2P	HOP2	180.0	180.0
O4P	P	O3P	HOP3	180.0	299.9
O4P	P	O1P	O2P	235.0	120.1
O4P	P	O1P	O3P	112.3	240.1
O2P	P	O1P	O3P	237.4	120.0
O1P	P	O2P	HOP2	51.2	300.1
O1P	P	O3P	HOP3	297.7	179.9
O4P	P	O2P	O1P	128.8	239.9
O4P	P	O2P	O3P	248.3	119.9
O1P	P	O2P	O3P	119.5	240.0
O2P	P	O3P	HOP3	69.1	59.9
O4P	P	O3P	O1P	242.3	120.0
O4P	P	O3P	O2P	110.9	240.0
O1P	P	O3P	O2P	228.6	120.0
O3P	P	O2P	HOP2	291.7	60.0
HOP2	O2P	P	O3P	291.7	60.0
CA	N	C4A	H4A1	50.3	300.0
CA	N	C4A	H4A2	300.8	60.0
C4A	N	CA	HN2	234.8	246.2
C	CA	N	CB	123.2	120.0
C	CA	N	HA	241.8	240.0
N	CA	C	O	23.7	360.0
N	CA	C	OXT	204.2	180.0
CB	CA	N	HA	118.7	120.0
N	CA	CB	HB1	180.0	60.0
N	CA	CB	HB2	305.3	180.1
N	CA	CB	HB3	54.7	300.1
HN2	N	C4A	H4A1	285.0	186.2
HN2	N	C4A	H4A2	175.6	306.2
C4A	N	HN2	CA	124.6	113.9
HN2	N	CA	C	304.6	323.9
HN2	N	CA	CB	181.5	203.8
HN2	N	CA	HA	62.8	83.9
C	CA	N	HN2	304.6	323.9
N	CA	C	CB	238.5	240.0
N	CA	C	HA	120.0	120.0
CB	CA	C	HA	241.4	240.1
C	CA	CB	HB1	58.1	299.9
C	CA	CB	HB2	183.3	60.0
C	CA	CB	HB3	292.8	180.0
O	C	CA	OXT	179.5	180.0
CA	C	OXT	HXT	180.0	180.0
CB	CA	N	HN2	181.5	203.8
N	CA	CB	C	121.9	120.1
N	CA	CB	HA	240.0	240.0
C	CA	CB	HA	118.1	119.9
CB	CA	C	O	145.2	120.0
CB	CA	C	OXT	325.7	300.0
HB1	CB	CA	HB2	234.8	239.9
HB1	CB	CA	HB3	125.3	120.0
HB2	CB	CA	HB3	250.6	240.0
HA	CA	N	HN2	62.8	83.9
N	CA	HA	C	240.2	239.9
N	CA	HA	CB	119.2	120.0
C	CA	HA	CB	239.0	240.1
HA	CA	C	O	263.8	240.0
HA	CA	C	OXT	84.2	60.0
HA	CA	CB	HB1	300.0	180.0
HA	CA	CB	HB2	65.2	300.1
HA	CA	CB	HB3	174.7	60.0
O	C	CA	CB	145.2	120.0
O	C	CA	HA	263.8	240.0
CA	C	O	OXT	180.5	180.0
O	C	OXT	HXT	0.5	360.0
OXT	C	CA	CB	325.7	300.0
OXT	C	CA	HA	84.2	60.0
CA	C	OXT	O	179.5	180.0
HB1	CB	CA	HA	300.0	180.0
CA	CB	HB1	HB2	125.3	120.1
CA	CB	HB1	HB3	234.6	240.0
HB2	CB	HB1	HB3	109.4	120.0
HB2	CB	CA	HA	65.2	300.1
CA	CB	HB2	HB1	236.5	239.9
CA	CB	HB2	HB3	118.3	120.0
HB1	CB	HB2	HB3	241.8	240.0
HB3	CB	CA	HA	174.7	60.0
CA	CB	HB3	HB1	123.6	120.0
CA	CB	HB3	HB2	241.7	240.0
HB1	CB	HB3	HB2	118.2	120.0