PDB Chemical Component PP1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PP1

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C4	1.388	1.362
N1	N8	1.382	1.398
N1	C28	1.489	1.465
C2	N3	1.389	1.315
C2	N7	1.382	1.320
C2	HC2	1.103	1.080
N3	C4	1.390	1.333
C4	C5	1.390	1.407
C5	C6	1.403	1.405
C5	C9	1.388	1.462
C6	N7	1.385	1.329
C6	N10	1.348	1.381
N8	C9	1.382	1.312
C9	C11	1.468	1.483
N10	H101	1.021	0.970
N10	H102	1.020	0.970
C11	C12	1.408	1.393
C11	C16	1.411	1.393
C12	C13	1.400	1.380
C12	HC12	1.103	1.080
C13	C14	1.401	1.383
C13	HC13	1.103	1.080
C14	C15	1.414	1.382
C14	C24	1.508	1.507
C15	C16	1.417	1.381
C15	HC15	1.103	1.080
C16	HC16	1.103	1.080
C24	H241	1.115	1.090
C24	H242	1.116	1.089
C24	H243	1.114	1.089
C28	C29	1.531	1.530
C28	C33	1.529	1.530
C28	C37	1.535	1.529
C29	H291	1.114	1.089
C29	H292	1.116	1.089
C29	H293	1.114	1.090
C33	H331	1.114	1.090
C33	H332	1.116	1.090
C33	H333	1.115	1.090
C37	H371	1.114	1.090
C37	H372	1.115	1.090
C37	H373	1.116	1.091

Bond Angles for PP1

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C4	N1	N8	107.6	109.5
C4	N1	C28	125.2	125.2
N1	C4	N3	131.7	134.5
N1	C4	C5	108.1	106.9
N8	N1	C28	126.9	125.3
N1	N8	C9	108.7	109.9
N1	C28	C29	112.5	109.5
N1	C28	C33	113.3	109.5
N1	C28	C37	112.5	109.5
N3	C2	N7	119.4	122.7
N3	C2	HC2	120.6	118.6
C2	N3	C4	120.6	120.7
N7	C2	HC2	120.0	118.7
C2	N7	C6	120.5	121.1
N3	C4	C5	120.2	118.6
C4	C5	C6	118.9	118.6
C4	C5	C9	107.8	106.4
C6	C5	C9	133.3	135.0
C5	C6	N7	120.4	118.3
C5	C6	N10	120.9	120.8
C5	C9	N8	107.8	107.4
C5	C9	C11	137.7	126.3
N7	C6	N10	118.7	120.9
C6	N10	H101	120.9	120.0
C6	N10	H102	108.1	120.0
N8	C9	C11	114.5	126.3
C9	C11	C12	118.6	120.1
C9	C11	C16	121.6	120.1
H101	N10	H102	108.1	120.0
C12	C11	C16	119.8	119.7
C11	C12	C13	120.5	119.9
C11	C12	HC12	120.0	120.1
C11	C16	C15	119.6	119.9
C11	C16	HC16	120.0	120.1
C13	C12	HC12	119.5	120.0
C12	C13	C14	120.2	120.2
C12	C13	HC13	119.9	119.9
C14	C13	HC13	120.0	119.9
C13	C14	C15	120.0	120.2
C13	C14	C24	119.4	119.9
C15	C14	C24	120.6	119.9
C14	C15	C16	119.9	120.1
C14	C15	HC15	119.9	119.9
C14	C24	H241	119.4	109.5
C14	C24	H242	108.6	109.5
C14	C24	H243	108.7	109.5
C16	C15	HC15	120.2	119.9
C15	C16	HC16	120.4	120.1
H241	C24	H242	108.6	109.5
H241	C24	H243	108.7	109.4
H242	C24	H243	101.4	109.4
C29	C28	C33	105.3	109.5
C29	C28	C37	106.2	109.4
C28	C29	H291	112.5	109.5
C28	C29	H292	111.1	109.5
C28	C29	H293	111.1	109.5
C33	C28	C37	106.5	109.5
C28	C33	H331	113.3	109.5
C28	C33	H332	110.8	109.5
C28	C33	H333	110.8	109.5
C28	C37	H371	112.5	109.4
C28	C37	H372	111.1	109.5
C28	C37	H373	111.1	109.5
H291	C29	H292	111.1	109.5
H291	C29	H293	111.2	109.5
H292	C29	H293	99.2	109.4
H331	C33	H332	110.8	109.5
H331	C33	H333	110.8	109.5
H332	C33	H333	99.4	109.4
H371	C37	H372	111.2	109.5
H371	C37	H373	111.1	109.4
H372	C37	H373	99.2	109.5

Torsion Angles for PP1

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N8	N1	C4	C28	174.5	180.0
C4	N1	N8	C9	359.8	0.0
C4	N1	C28	C29	170.4	180.0
C4	N1	C28	C33	51.1	300.0
C4	N1	C28	C37	290.3	60.0
C2	N3	C4	N1	179.9	180.0
N3	C4	N1	C5	179.9	180.3
N1	C4	C5	C6	179.8	179.7
N1	C4	C5	C9	359.4	0.4
C4	N1	N8	C28	185.6	180.0
N8	N1	C4	N3	180.3	180.0
N8	N1	C4	C5	0.5	359.8
N8	N1	C28	C29	357.0	0.0
N8	N1	C28	C33	237.7	120.0
N8	N1	C28	C37	116.9	240.0
C5	C9	N8	N1	359.9	0.2
N1	N8	C9	C11	179.4	180.0
C4	N1	C28	N8	173.4	180.0
C28	N1	C4	N3	5.8	0.0
C28	N1	C4	C5	186.0	179.8
C28	N1	N8	C9	174.2	180.0
C29	C28	N1	C33	119.3	240.0
C29	C28	N1	C37	240.1	120.0
N1	C28	C29	H291	180.1	180.0
N1	C28	C29	H292	305.3	300.1
N1	C28	C29	H293	54.7	60.0
C33	C28	N1	C37	120.8	240.0
N1	C28	C33	H331	180.0	300.0
N1	C28	C33	H332	305.3	60.1
N1	C28	C33	H333	54.7	180.0
N1	C28	C37	H371	179.9	59.9
N1	C28	C37	H372	305.3	180.0
N1	C28	C37	H373	54.7	300.0
N1	C4	N3	C2	179.9	180.0
N7	C2	N3	HC2	180.0	180.1
N3	C2	N7	C6	359.6	359.9
C2	N3	C4	C5	359.7	0.3
N3	C2	N7	HC2	180.0	179.9
N7	C2	N3	C4	0.5	0.0
C5	C6	N7	C2	0.1	359.8
C2	N7	C6	N10	179.6	180.0
N3	C2	HC2	N7	180.0	180.1
HC2	C2	N3	C4	180.5	180.0
HC2	C2	N7	C6	179.6	180.0
N3	C4	N1	N8	180.3	180.0
N3	C4	N1	C28	5.8	0.0
N1	C4	N3	C5	180.2	179.7
C4	N3	C2	N7	0.5	0.0
C4	N3	C2	HC2	180.5	180.0
N3	C4	C5	C6	360.0	359.5
N3	C4	C5	C9	179.6	180.2
C5	C4	N1	N8	0.5	359.8
C5	C4	N1	C28	186.0	179.8
N1	C4	C5	N3	179.9	180.2
C6	C5	C4	C9	180.4	179.3
C4	C5	C6	N7	0.1	0.5
C4	C5	C6	N10	180.6	180.3
C4	C5	C9	N8	0.4	359.6
C4	C5	C9	C11	181.1	179.9
C2	N7	C6	C5	0.1	359.8
C4	C5	C6	C9	179.5	181.0
C6	C5	C9	N8	180.0	180.5
C6	C5	C9	C11	0.6	0.7
N7	C6	C5	N10	179.5	180.2
C5	C6	N10	H101	180.0	195.8
C5	C6	N10	H102	54.8	15.9
N1	N8	C9	C5	359.9	0.2
C4	C5	C9	C6	180.5	179.1
C9	C5	C6	N7	180.6	179.5
C9	C5	C6	N10	1.1	359.3
N8	C9	C5	C11	179.4	179.8
C5	C9	C11	C12	56.7	44.6
C5	C9	C11	C16	236.2	224.6
C6	N7	C2	HC2	179.6	180.0
N7	C6	C5	C9	180.6	179.5
C5	C6	N7	N10	180.5	179.8
N7	C6	N10	H101	0.4	15.6
N7	C6	N10	H102	235.2	195.7
N10	C6	C5	C9	1.1	359.3
C5	C6	N10	N7	179.5	180.2
H101	N10	C6	H102	125.2	179.9
C9	N8	N1	C28	174.2	180.0
C5	C9	N8	C11	180.5	180.2
N8	C9	C11	C12	237.4	224.9
N8	C9	C11	C16	56.9	44.8
C5	C9	C11	N8	179.3	179.7
C12	C11	C9	C16	180.5	180.1
C9	C11	C12	C13	179.5	180.0
C9	C11	C12	HC12	359.4	360.0
C9	C11	C16	C15	180.6	179.8
C9	C11	C16	HC16	0.7	0.0
C6	N10	H101	H102	234.8	180.1
C6	N10	H102	H101	132.5	179.9
C9	C11	C12	C16	179.5	179.9
C12	C11	C16	C15	0.1	359.7
C12	C11	C16	HC16	180.2	180.0
C13	C12	C11	HC12	180.1	180.0
C11	C12	C13	C14	359.9	0.0
C11	C12	C13	HC13	179.8	180.0
C9	C11	C16	C12	180.5	180.1
C16	C11	C12	C13	360.0	0.0
C16	C11	C12	HC12	179.9	180.0
C14	C15	C16	C11	360.0	0.5
C11	C16	C15	HC15	180.0	180.1
C15	C16	C11	HC16	179.9	179.7
C13	C12	C11	C16	360.0	0.0
C11	C12	C13	HC12	179.9	180.0
C14	C13	C12	HC13	180.1	180.0
C12	C13	C14	C15	0.2	0.2
C12	C13	C14	C24	180.1	180.0
HC12	C12	C11	C16	179.9	180.0
C11	C12	HC12	C13	180.1	180.0
HC12	C12	C13	C14	180.0	180.0
HC12	C12	C13	HC13	359.9	0.0
C14	C13	C12	HC12	180.0	180.0
C12	C13	C14	HC13	179.9	180.0
C15	C14	C13	C24	180.0	180.2
C13	C14	C15	C16	359.9	359.5
C13	C14	C15	HC15	179.8	180.0
C13	C14	C24	H241	180.0	89.9
C13	C14	C24	H242	305.2	210.0
C13	C14	C24	H243	54.7	329.9
HC13	C13	C12	HC12	359.9	0.0
C12	C13	HC13	C14	180.1	180.0
HC13	C13	C14	C15	180.2	180.2
HC13	C13	C14	C24	0.2	0.0
C11	C16	C15	C14	360.0	0.5
C15	C14	C13	HC13	180.2	180.2
C13	C14	C15	C24	180.0	179.8
C15	C14	C24	H241	0.0	269.7
C15	C14	C24	H242	125.2	29.8
C15	C14	C24	H243	234.7	149.7
C16	C15	C14	HC15	180.1	179.5
C14	C15	C16	HC16	179.9	180.2
C24	C14	C13	HC13	0.2	0.0
C13	C14	C24	C15	180.0	180.2
C24	C14	C15	C16	179.9	179.7
C24	C14	C15	HC15	359.8	0.2
H241	C24	C14	H242	234.8	240.0
H241	C24	C14	H243	125.4	120.0
H242	C24	C14	H243	250.5	240.0
C11	C16	C15	HC16	180.1	180.3
C16	C15	C14	C24	179.9	179.7
C14	C15	C16	HC15	179.9	180.5
HC15	C15	C14	C24	359.8	0.2
C14	C15	HC15	C16	180.1	179.6
HC15	C15	C16	HC16	360.0	359.8
C11	C16	HC16	C15	179.9	179.7
HC16	C16	C15	HC15	360.0	359.8
C14	C24	H241	H242	125.2	120.0
C14	C24	H241	H243	234.7	240.0
H242	C24	H241	H243	109.5	119.9
C14	C24	H242	H241	228.7	239.9
C14	C24	H242	H243	114.3	120.0
H241	C24	H242	H243	245.6	240.1
C14	C24	H243	H241	131.4	120.1
C14	C24	H243	H242	245.7	240.0
H241	C24	H243	H242	114.3	120.0
N1	C28	C29	C33	236.2	120.0
N1	C28	C29	C37	123.5	240.0
C33	C28	C29	C37	247.3	120.0
C29	C28	C33	H331	56.7	60.0
C29	C28	C33	H332	182.0	180.1
C29	C28	C33	H333	291.3	300.0
C29	C28	C37	H371	303.4	299.9
C29	C28	C37	H372	68.8	60.0
C29	C28	C37	H373	178.2	180.0
H291	C29	C28	H292	234.8	239.9
H291	C29	C28	H293	125.3	120.0
H292	C29	C28	H293	250.6	240.1
N1	C28	C33	C29	123.3	240.0
N1	C28	C33	C37	235.8	120.0
C29	C28	C33	C37	112.5	240.0
C33	C28	C29	H291	303.9	60.0
C33	C28	C29	H292	69.1	180.1
C33	C28	C29	H293	178.5	300.0
C33	C28	C37	H371	55.3	180.0
C33	C28	C37	H372	180.7	300.0
C33	C28	C37	H373	290.1	60.1
H331	C33	C28	H332	234.7	239.9
H331	C33	C28	H333	125.3	120.0
H332	C33	C28	H333	250.6	240.0
N1	C28	C37	C29	236.5	120.0
N1	C28	C37	C33	124.7	240.0
C29	C28	C37	C33	248.1	120.0
C37	C28	C29	H291	56.5	300.0
C37	C28	C29	H292	181.8	60.1
C37	C28	C29	H293	291.2	180.0
C37	C28	C33	H331	304.2	180.0
C37	C28	C33	H332	69.5	300.0
C37	C28	C33	H333	178.9	60.0
H371	C37	C28	H372	234.6	240.0
H371	C37	C28	H373	125.2	119.9
H372	C37	C28	H373	250.6	239.9
H291	C29	C28	C33	303.9	60.0
H291	C29	C28	C37	56.5	300.0
C28	C29	H291	H292	125.2	120.1
C28	C29	H291	H293	234.7	240.0
H292	C29	H291	H293	109.5	119.9
H292	C29	C28	C33	69.1	180.1
H292	C29	C28	C37	181.8	60.1
C28	C29	H292	H291	234.0	239.9
C28	C29	H292	H293	116.9	120.0
H291	C29	H292	H293	242.9	240.0
H293	C29	C28	C33	178.5	300.0
H293	C29	C28	C37	291.2	180.0
C28	C29	H293	H291	126.1	120.0
C28	C29	H293	H292	243.1	240.0
H291	C29	H293	H292	117.0	120.0
H331	C33	C28	C37	304.2	180.0
C28	C33	H331	H332	125.3	120.0
C28	C33	H331	H333	234.7	240.0
H332	C33	H331	H333	109.4	120.0
H332	C33	C28	C37	69.5	300.0
C28	C33	H332	H331	233.3	240.0
C28	C33	H332	H333	116.7	120.0
H331	C33	H332	H333	243.4	240.0
H333	C33	C28	C37	178.9	60.0
C28	C33	H333	H331	126.7	120.0
C28	C33	H333	H332	243.3	240.0
H331	C33	H333	H332	116.6	120.0
C28	C37	H371	H372	125.3	120.0
C28	C37	H371	H373	234.8	240.1
H372	C37	H371	H373	109.5	120.0
C28	C37	H372	H371	233.9	240.0
C28	C37	H372	H373	116.9	120.0
H371	C37	H372	H373	243.0	240.0
C28	C37	H373	H371	126.0	119.9
C28	C37	H373	H372	243.1	239.9
H371	C37	H373	H372	117.0	120.0