PDB Chemical Component PNY

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PNY

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CAA OAE 1.446 1.428
CAA CAF 1.523 1.530
CAB CAF 1.565 1.531
OAC CAO 1.247 1.213
OAD CAP 1.235 1.212
CAF CAI 1.535 1.531
CAF CAQ 1.553 1.530
SAG CAH 1.843 1.814
CAH CAJ 1.509 1.530
CAJ NAM 1.455 1.465
CAK CAL 1.529 1.530
CAK NAN 1.473 1.465
CAL CAO 1.554 1.507
NAM CAO 1.339 1.347
NAN CAP 1.332 1.348
CAP CAQ 1.567 1.507
CAQ OAR 1.411 1.430
CAA HAA 1.100 1.090
CAA HAAA 1.100 1.091
CAB HAB 1.100 1.090
CAB HABA 1.100 1.090
CAB HABB 1.100 1.090
OAE HOAE 0.950 0.967
SAG HSAG 1.300 1.345
CAH HAH 1.100 1.090
CAH HAHA 1.099 1.090
CAI HAI 1.100 1.090
CAI HAIA 1.100 1.090
CAI HAIB 1.101 1.090
CAJ HAJ 1.100 1.090
CAJ HAJA 1.100 1.090
CAK HAK 1.100 1.090
CAK HAKA 1.100 1.090
CAL HAL 1.100 1.091
CAL HALA 1.100 1.090
NAM HNAM 1.000 0.970
NAN HNAN 1.000 0.969
CAQ HAQ 1.100 1.090
OAR HOAR 0.950 0.967

Bond Angles for PNY

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OAE CAA CAF 108.6 109.5
OAE CAA HAA 109.8 109.5
OAE CAA HAAA 109.8 109.5
CAA OAE HOAE 109.5 114.0
CAA CAF CAB 110.2 109.5
CAA CAF CAI 108.7 109.5
CAA CAF CAQ 105.0 109.5
CAF CAA HAA 109.7 109.5
CAF CAA HAAA 109.8 109.5
CAB CAF CAI 111.1 109.5
CAB CAF CAQ 113.8 109.5
CAF CAB HAB 109.5 109.4
CAF CAB HABA 109.5 109.5
CAF CAB HABB 109.5 109.5
OAC CAO CAL 123.5 120.0
OAC CAO NAM 124.7 120.0
OAD CAP NAN 121.9 120.0
OAD CAP CAQ 119.2 120.0
CAI CAF CAQ 107.9 109.5
CAF CAI HAI 109.5 109.4
CAF CAI HAIA 109.5 109.5
CAF CAI HAIB 109.5 109.5
CAF CAQ CAP 116.1 109.5
CAF CAQ OAR 109.9 109.5
CAF CAQ HAQ 105.6 109.5
SAG CAH CAJ 107.0 109.5
CAH SAG HSAG 102.0 103.0
SAG CAH HAH 110.3 109.4
SAG CAH HAHA 110.3 109.5
CAH CAJ NAM 113.9 109.5
CAJ CAH HAH 110.3 109.4
CAJ CAH HAHA 110.3 109.5
CAH CAJ HAJ 108.0 109.4
CAH CAJ HAJA 108.0 109.5
CAJ NAM CAO 124.7 120.0
NAM CAJ HAJ 108.0 109.5
NAM CAJ HAJA 108.0 109.5
CAJ NAM HNAM 117.7 119.9
CAL CAK NAN 111.9 109.5
CAK CAL CAO 116.9 109.5
CAL CAK HAK 108.7 109.4
CAL CAK HAKA 108.7 109.4
CAK CAL HAL 107.1 109.4
CAK CAL HALA 107.0 109.5
CAK NAN CAP 120.0 119.9
NAN CAK HAK 108.7 109.5
NAN CAK HAKA 108.7 109.5
CAK NAN HNAN 120.0 120.0
CAL CAO NAM 111.9 120.0
CAO CAL HAL 107.0 109.5
CAO CAL HALA 107.1 109.5
CAO NAM HNAM 117.6 120.0
NAN CAP CAQ 118.9 119.9
CAP NAN HNAN 120.0 120.1
CAP CAQ OAR 112.7 109.5
CAP CAQ HAQ 102.3 109.5
OAR CAQ HAQ 109.5 109.4
CAQ OAR HOAR 109.5 114.0
HAA CAA HAAA 109.2 109.4
HAB CAB HABA 109.5 109.4
HAB CAB HABB 109.5 109.5
HABA CAB HABB 109.5 109.5
HAH CAH HAHA 108.6 109.5
HAI CAI HAIA 109.5 109.5
HAI CAI HAIB 109.4 109.5
HAIA CAI HAIB 109.5 109.5
HAJ CAJ HAJA 110.9 109.4
HAK CAK HAKA 110.3 109.5
HAL CAL HALA 111.8 109.4

Torsion Angles for PNY

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OAE CAA CAF CAB 166.7 300.0
OAE CAA CAF CAI 288.6 60.0
OAE CAA CAF CAQ 43.8 180.0
CAF CAA OAE HAA 240.0 240.0
CAF CAA OAE HAAA 120.0 120.0
HAA CAA OAE HAAA 240.0 240.0
OAE CAA CAF HAA 120.0 120.0
OAE CAA CAF HAAA 240.0 240.0
CAF CAA OAE HOAE 180.0 180.0
CAB CAF CAA CAI 238.1 240.0
CAB CAF CAA CAQ 122.9 120.0
CAA CAF CAB HAB 180.0 67.0
CAA CAF CAB HABA 300.0 186.9
CAA CAF CAB HABB 60.0 307.0
CAI CAF CAA CAQ 244.7 240.0
CAA CAF CAI HAI 180.0 63.2
CAA CAF CAI HAIA 300.0 183.2
CAA CAF CAI HAIB 60.0 303.2
CAA CAF CAQ CAP 187.9 54.6
CAA CAF CAQ OAR 58.4 294.6
CAA CAF CAQ HAQ 300.4 174.7
HAA CAA CAF HAAA 120.0 119.9
CAA CAF CAB CAI 120.5 120.0
CAA CAF CAB CAQ 242.4 240.0
CAB CAF CAA HAA 46.7 180.0
CAB CAF CAA HAAA 286.7 60.0
CAI CAF CAB CAQ 122.0 120.0
CAB CAF CAI HAI 301.3 183.2
CAB CAF CAI HAIA 61.4 303.2
CAB CAF CAI HAIB 181.4 63.2
CAB CAF CAQ CAP 67.4 294.6
CAB CAF CAQ OAR 297.9 174.6
CAB CAF CAQ HAQ 179.8 54.7
HAB CAB CAF HABA 240.0 240.1
HAB CAB CAF HABB 120.0 120.0
HABA CAB CAF HABB 240.0 239.9
CAJ NAM CAO OAC 355.9 0.0
CAK CAL CAO OAC 305.8 359.9
CAL CAO OAC NAM 181.7 180.1
OAC CAO CAL HAL 185.8 240.0
OAC CAO CAL HALA 65.8 120.0
OAC CAO NAM HNAM 175.9 180.0
CAF CAQ CAP OAD 87.3 253.9
CAK NAN CAP OAD 358.4 355.0
NAN CAP OAD CAQ 182.8 180.0
OAD CAP NAN HNAN 178.4 175.0
OAD CAP CAQ OAR 215.4 13.9
OAD CAP CAQ HAQ 333.0 133.9
CAA CAF CAI CAB 238.6 240.0
CAA CAF CAI CAQ 113.3 120.0
CAI CAF CAA HAA 168.6 299.9
CAI CAF CAA HAAA 48.6 180.0
CAB CAF CAI CAQ 234.7 240.0
CAI CAF CAB HAB 59.5 307.0
CAI CAF CAB HABA 179.5 67.0
CAI CAF CAB HABB 299.5 187.0
CAI CAF CAQ CAP 303.7 174.6
CAI CAF CAQ OAR 174.2 54.6
CAI CAF CAQ HAQ 56.1 294.7
HAI CAI CAF HAIA 240.0 240.0
HAI CAI CAF HAIB 120.0 120.0
HAIA CAI CAF HAIB 240.0 240.0
CAA CAF CAQ CAB 120.5 120.0
CAA CAF CAQ CAI 244.2 240.0
CAQ CAF CAA HAA 283.8 60.0
CAQ CAF CAA HAAA 163.9 300.0
CAB CAF CAQ CAI 123.7 120.0
CAQ CAF CAB HAB 297.5 187.0
CAQ CAF CAB HABA 57.5 307.0
CAQ CAF CAB HABB 177.5 67.0
OAD CAP CAQ CAF 87.3 253.9
CAQ CAF CAI HAI 66.6 303.2
CAQ CAF CAI HAIA 186.7 63.2
CAQ CAF CAI HAIB 306.7 183.2
NAN CAP CAQ CAF 264.7 73.9
CAP CAQ CAF OAR 129.5 120.0
CAP CAQ CAF HAQ 247.5 239.9
OAR CAQ CAF HAQ 118.0 119.9
CAF CAQ OAR HOAR 180.0 60.0
SAG CAH CAJ NAM 175.7 180.0
CAJ CAH SAG HAH 240.0 240.1
CAJ CAH SAG HAHA 120.0 120.1
SAG CAH CAJ HAJ 295.7 300.0
SAG CAH CAJ HAJA 55.7 59.9
HAH CAH SAG HAHA 240.0 240.0
CAJ CAH SAG HSAG 180.0 180.0
SAG CAH CAJ HAH 120.0 120.0
SAG CAH CAJ HAHA 240.0 239.9
CAH CAJ NAM CAO 76.8 180.0
NAM CAJ CAH HAJ 240.0 240.0
NAM CAJ CAH HAJA 120.0 120.1
CAH CAJ NAM HNAM 256.8 359.9
HAH CAH CAJ HAHA 120.0 119.9
HAJ CAJ CAH HAJA 240.0 240.1
OAC CAO NAM CAJ 355.9 0.0
NAM CAJ CAH HAH 55.7 60.0
NAM CAJ CAH HAHA 295.7 300.1
CAH CAJ NAM HAJ 120.0 120.0
CAH CAJ NAM HAJA 240.0 239.9
CAL CAO NAM CAJ 174.3 179.9
CAO NAM CAJ HNAM 180.0 180.0
HAJ CAJ NAM HAJA 120.0 119.9
OAC CAO CAL CAK 305.8 359.9
CAL CAK NAN CAP 86.9 180.0
NAN CAK CAL HAK 240.0 240.0
NAN CAK CAL HAKA 120.0 120.1
CAL CAK NAN HNAN 266.9 0.0
CAK CAL CAO NAM 127.3 180.0
CAO CAL CAK HAL 240.0 240.0
CAO CAL CAK HALA 120.0 120.1
HAK CAK CAL HAKA 240.0 240.1
HAL CAL CAK HALA 240.0 240.1
OAD CAP NAN CAK 358.4 355.0
NAN CAK CAL CAO 269.6 180.0
CAL CAK NAN HAK 120.0 120.0
CAL CAK NAN HAKA 240.0 240.0
NAN CAK CAL HAL 29.6 300.0
NAN CAK CAL HALA 149.6 60.0
CAK NAN CAP CAQ 181.1 175.1
CAP NAN CAK HNAN 180.0 180.0
HAK CAK NAN HAKA 120.0 120.0
OAC CAO CAL NAM 178.5 179.9
CAJ NAM CAO CAL 174.3 179.9
CAO CAL CAK NAN 269.6 180.0
CAO CAL CAK HAK 29.6 300.0
CAO CAL CAK HAKA 149.6 60.0
CAK CAL CAO HAL 120.0 120.0
CAK CAL CAO HALA 240.0 239.9
CAL CAO NAM HNAM 354.3 360.0
HAL CAL CAO HALA 120.0 120.0
OAC CAO NAM CAL 181.6 180.1
CAO NAM CAJ HAJ 316.8 60.0
CAO NAM CAJ HAJA 196.8 300.0
CAJ NAM CAO HNAM 180.0 180.0
NAM CAO CAL HAL 7.3 60.0
NAM CAO CAL HALA 247.3 300.1
OAD CAP NAN CAQ 177.2 180.0
CAF CAQ CAP NAN 264.7 73.9
CAP NAN CAK HAK 326.9 60.0
CAP NAN CAK HAKA 206.9 300.0
CAK NAN CAP HNAN 180.0 180.0
NAN CAP CAQ OAR 32.8 193.9
NAN CAP CAQ HAQ 150.3 313.9
OAD CAP CAQ NAN 182.7 180.0
CAF CAQ CAP OAR 231.9 240.0
CAF CAQ CAP HAQ 114.4 120.1
CAQ CAP NAN HNAN 1.1 355.0
OAR CAQ CAP HAQ 242.5 240.1
CAP CAQ OAR HOAR 48.7 299.9
CAF CAQ OAR CAP 131.3 120.0
CAF CAQ OAR HAQ 244.4 240.0
CAP CAQ OAR HAQ 113.1 120.0
OAE CAA HAA CAF 240.7 240.0
OAE CAA HAA HAAA 120.4 120.0
HAA CAA OAE HOAE 300.0 300.0
HAA CAA CAF CAB 46.7 180.0
HAA CAA CAF CAI 168.6 299.9
HAA CAA CAF CAQ 283.8 60.0
CAF CAA HAA HAAA 239.7 240.0
OAE CAA HAAA CAF 119.3 120.0
OAE CAA HAAA HAA 239.6 240.0
HAAA CAA OAE HOAE 60.0 60.0
HAAA CAA CAF CAB 286.7 60.0
HAAA CAA CAF CAI 48.6 180.0
HAAA CAA CAF CAQ 163.9 300.0
CAF CAA HAAA HAA 120.3 120.0
HAB CAB CAF CAI 59.5 307.0
HAB CAB CAF CAQ 297.5 187.0
CAF CAB HAB HABA 120.0 119.9
CAF CAB HAB HABB 240.0 240.0
HABA CAB HAB HABB 120.0 120.1
HABA CAB CAF CAI 179.5 67.0
HABA CAB CAF CAQ 57.5 307.0
CAF CAB HABA HAB 240.0 240.1
CAF CAB HABA HABB 120.0 120.0
HAB CAB HABA HABB 240.0 239.9
HABB CAB CAF CAI 299.5 187.0
HABB CAB CAF CAQ 177.5 67.0
CAF CAB HABB HAB 120.0 120.0
CAF CAB HABB HABA 240.0 240.0
HAB CAB HABB HABA 120.0 120.0
HOAE OAE CAA CAF 180.0 180.0
HOAE OAE CAA HAA 300.0 300.0
HOAE OAE CAA HAAA 60.0 60.0
HSAG SAG CAH CAJ 180.0 180.0
HSAG SAG CAH HAH 300.0 300.0
HSAG SAG CAH HAHA 60.0 60.0
SAG CAH HAH CAJ 242.0 240.0
HAH CAH SAG HSAG 300.0 300.0
SAG CAH HAH HAHA 121.0 120.1
HAH CAH CAJ NAM 55.7 60.0
CAJ CAH HAH HAHA 239.0 240.1
HAH CAH CAJ HAJ 175.7 180.0
HAH CAH CAJ HAJA 295.7 299.9
SAG CAH HAHA CAJ 118.0 120.1
HAHA CAH SAG HSAG 60.0 60.0
SAG CAH HAHA HAH 239.0 240.0
HAHA CAH CAJ NAM 295.7 300.1
CAJ CAH HAHA HAH 121.0 119.9
HAHA CAH CAJ HAJ 55.7 60.1
HAHA CAH CAJ HAJA 175.7 180.0
HAI CAI CAF CAQ 66.6 303.2
CAF CAI HAI HAIA 120.0 120.0
CAF CAI HAI HAIB 240.0 240.0
HAIA CAI HAI HAIB 120.0 120.0
HAIA CAI CAF CAQ 186.7 63.2
CAF CAI HAIA HAI 240.0 240.1
CAF CAI HAIA HAIB 120.0 120.0
HAI CAI HAIA HAIB 240.0 239.9
HAIB CAI CAF CAQ 306.7 183.2
CAF CAI HAIB HAI 120.0 120.0
CAF CAI HAIB HAIA 240.0 240.0
HAI CAI HAIB HAIA 120.0 120.0
CAH CAJ HAJ NAM 236.4 239.9
HAJ CAJ CAH HAH 175.7 180.0
HAJ CAJ CAH HAHA 55.7 60.1
CAH CAJ HAJ HAJA 118.2 119.9
HAJ CAJ NAM CAO 316.8 60.0
NAM CAJ HAJ HAJA 241.8 240.0
HAJ CAJ NAM HNAM 136.8 239.9
CAH CAJ HAJA NAM 123.6 120.1
HAJA CAJ CAH HAH 295.7 299.9
HAJA CAJ CAH HAHA 175.7 180.0
CAH CAJ HAJA HAJ 241.8 240.1
HAJA CAJ NAM CAO 196.8 300.0
NAM CAJ HAJA HAJ 118.2 120.0
HAJA CAJ NAM HNAM 16.8 120.0
CAL CAK HAK NAN 238.0 240.0
HAK CAK CAL CAO 29.6 300.0
CAL CAK HAK HAKA 119.0 119.9
HAK CAK CAL HAL 149.6 60.0
HAK CAK CAL HALA 269.6 180.0
HAK CAK NAN CAP 326.9 60.0
NAN CAK HAK HAKA 241.0 239.9
HAK CAK NAN HNAN 146.9 240.0
CAL CAK HAKA NAN 122.0 120.0
HAKA CAK CAL CAO 149.6 60.0
CAL CAK HAKA HAK 241.0 240.1
HAKA CAK CAL HAL 269.6 180.0
HAKA CAK CAL HALA 29.6 299.9
HAKA CAK NAN CAP 206.9 300.0
NAN CAK HAKA HAK 119.0 120.0
HAKA CAK NAN HNAN 26.9 120.0
HAL CAL CAK NAN 29.6 300.0
CAK CAL HAL CAO 233.9 240.0
HAL CAL CAK HAK 149.6 60.0
HAL CAL CAK HAKA 269.6 180.0
CAK CAL HAL HALA 116.9 120.0
HAL CAL CAO NAM 7.3 60.0
CAO CAL HAL HALA 243.1 240.0
HALA CAL CAK NAN 149.6 60.0
CAK CAL HALA CAO 126.1 120.1
HALA CAL CAK HAK 269.6 180.0
HALA CAL CAK HAKA 29.6 299.9
CAK CAL HALA HAL 243.0 240.1
HALA CAL CAO NAM 247.3 300.1
CAO CAL HALA HAL 116.9 120.0
CAJ NAM HNAM CAO 180.0 180.0
HNAM NAM CAJ HAJ 136.8 239.9
HNAM NAM CAJ HAJA 16.8 120.0
CAK NAN HNAN CAP 180.0 180.0
HNAN NAN CAK HAK 146.9 240.0
HNAN NAN CAK HAKA 26.9 120.0
HNAN NAN CAP CAQ 1.1 355.0
CAF CAQ HAQ CAP 238.1 239.9
CAF CAQ HAQ OAR 118.3 120.0
CAP CAQ HAQ OAR 240.2 240.0
HAQ CAQ OAR HOAR 295.6 179.9
HOAR OAR CAQ HAQ 295.6 179.9