PDB Chemical Component PNV

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PNV

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C22 C21 1.390 1.383
C22 C23 1.388 1.382
C21 C20 1.396 1.381
C23 C24 1.395 1.382
C20 C19 1.400 1.388
C24 C19 1.399 1.388
C19 O1 1.387 1.358
O1 C2 1.439 1.429
C2 C3 1.524 1.506
C3 N4 1.340 1.348
C3 O18 1.216 1.213
N4 C5 1.483 1.464
C5 C6 1.503 1.509
C5 C8 1.559 1.526
O17 C6 1.229 1.214
C6 N7 1.322 1.360
C8 N7 1.453 1.473
C8 S11 1.767 1.832
N7 C9 1.475 1.468
S11 C10 1.783 1.843
C9 C10 1.563 1.551
C9 C13 1.524 1.507
C10 C15 1.529 1.530
C10 C12 1.537 1.530
C13 O16 1.257 1.208
C13 O14 1.256 1.343
C24 H1 1.080 1.079
C23 H2 1.080 1.081
C22 H3 1.080 1.080
C21 H4 1.080 1.080
C20 H5 1.080 1.080
C2 H6 1.100 1.090
C2 H7 1.100 1.090
N4 H8 1.000 0.970
C5 H9 1.100 1.091
C8 H10 1.100 1.090
C12 H11 1.100 1.090
C12 H12 1.100 1.090
C12 H13 1.100 1.090
C15 H14 1.100 1.089
C15 H15 1.100 1.089
C15 H16 1.100 1.091
C9 H17 1.100 1.090
O14 H18 0.950 0.967

Bond Angles for PNV

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C22 C21 C20 120.2 120.1
C21 C22 H3 120.0 119.9
C22 C21 H4 119.9 120.0
C22 C23 H2 120.1 119.9
C21 C20 C19 120.7 119.9
C20 C21 H4 119.9 119.9
C21 C20 H5 119.7 120.1
C23 C24 C19 121.2 119.9
C23 C24 H1 119.4 120.0
C24 C19 C20 118.3 119.9
C20 C19 O1 118.7 120.1
C19 C20 H5 119.6 120.0
C24 C19 O1 123.0 120.1
C19 C24 H1 119.4 120.1
C19 O1 C2 127.2 117.0
O1 C2 C3 116.2 109.5
O1 C2 H6 107.8 109.5
O1 C2 H7 107.8 109.4
C2 C3 N4 113.0 120.0
C2 C3 O18 121.0 120.0
C3 C2 H6 107.8 109.5
C3 C2 H7 107.8 109.5
O18 C3 N4 126.0 120.0
C3 N4 C5 137.5 120.0
C3 N4 H8 111.3 120.0
N4 C5 C6 125.8 113.4
N4 C5 C8 115.1 113.4
C5 N4 H8 111.2 120.0
N4 C5 H9 109.2 112.7
C6 C5 C8 87.1 88.6
C5 C6 N7 90.3 89.0
C6 C5 H9 109.0 113.3
C5 C8 N7 83.6 84.3
C5 C8 S11 125.5 114.5
C8 C5 H9 108.3 113.3
C5 C8 H10 116.4 116.1
O17 C6 N7 136.6 135.5
C6 N7 C8 98.8 96.8
C6 N7 C9 137.2 116.7
N7 C8 S11 92.4 105.1
C8 N7 C9 123.0 114.8
N7 C8 H10 118.5 116.7
C8 S11 C10 98.3 94.7
S11 C8 H10 113.0 115.7
N7 C9 C10 103.3 110.4
N7 C9 C13 116.5 109.3
N7 C9 H17 105.7 109.3
S11 C10 C15 109.6 111.3
S11 C10 C12 108.8 111.3
C9 C13 O16 117.5 120.0
C9 C13 O14 121.4 119.9
C13 C9 H17 105.2 109.3
C12 C10 C15 107.7 111.2
C10 C15 H14 109.5 109.5
C10 C15 H15 109.5 109.5
C10 C15 H16 109.5 109.4
C10 C12 H11 109.5 109.5
C10 C12 H12 109.5 109.5
C10 C12 H13 109.5 109.5
O14 C13 O16 121.1 120.0
C13 O14 H18 109.5 116.9
H6 C2 H7 109.4 109.4
H11 C12 H12 109.4 109.4
H11 C12 H13 109.5 109.5
H12 C12 H13 109.5 109.5
H14 C15 H15 109.5 109.5
H14 C15 H16 109.4 109.4
H15 C15 H16 109.5 109.5

Torsion Angles for PNV

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C21 C22 C23 H2 179.6 180.0
C22 C21 C20 C19 359.5 0.0
C20 C21 C22 H4 180.0 180.0
C22 C21 C20 H5 179.5 180.0
C22 C23 C24 C19 0.2 0.0
C22 C23 C24 H1 180.2 179.7
C20 C21 C22 H3 180.6 180.1
C22 C21 C20 H4 180.0 180.0
C24 C19 C20 C21 0.3 0.0
C21 C20 C19 O1 180.4 180.3
C19 C20 C21 H5 180.0 180.0
C23 C24 C19 C20 359.9 360.0
C23 C24 C19 O1 179.7 179.7
C19 C24 C23 H1 180.0 180.3
C19 C20 C21 H4 179.5 180.0
C21 C20 C19 H5 180.0 180.0
C24 C19 C20 O1 179.8 179.7
C20 C19 C24 H1 179.9 180.3
C20 C19 O1 C2 165.9 359.7
C21 C20 C19 C24 0.3 0.0
C23 C24 C19 H1 180.0 179.7
C20 C19 C24 O1 180.2 180.3
C24 C19 C20 H5 180.3 180.0
C24 C19 O1 C2 346.1 180.0
C24 C19 O1 C20 180.2 180.3
O1 C19 C20 H5 0.4 0.3
O1 C19 C24 H1 359.7 0.0
C19 O1 C2 C3 279.4 180.0
C19 O1 C2 H6 40.4 300.0
C19 O1 C2 H7 158.4 60.0
O1 C2 C3 N4 102.4 180.0
O1 C2 C3 O18 280.8 359.9
C3 C2 O1 H6 239.0 240.0
C3 C2 O1 H7 121.0 120.1
H6 C2 O1 H7 242.0 240.1
O1 C2 C3 H6 121.0 120.0
O1 C2 C3 H7 239.0 240.0
O18 C3 C2 N4 178.4 179.9
C2 C3 N4 C5 179.6 180.0
C2 C3 N4 H8 359.6 359.9
H6 C2 C3 H7 118.0 120.0
C2 C3 N4 O18 178.3 179.9
N4 C3 C2 H6 341.4 60.0
N4 C3 C2 H7 223.4 300.0
C3 N4 C5 C6 39.8 255.5
C3 N4 C5 C8 294.2 156.3
C5 N4 C3 H8 180.0 180.0
C3 N4 C5 H9 172.3 25.9
C2 C3 O18 N4 181.8 180.1
O18 C3 C2 H6 159.8 239.9
O18 C3 C2 H7 41.8 120.0
O18 C3 N4 C5 1.3 0.1
O18 C3 N4 H8 181.3 180.0
C3 N4 C5 H8 180.0 180.0
C6 C5 N4 C8 105.6 99.1
N4 C5 C6 N7 244.3 253.3
C6 C5 N4 H9 227.5 229.5
N4 C5 C8 N7 125.3 107.3
N4 C5 C8 S11 37.0 3.2
C8 C5 N4 H9 122.0 130.4
N4 C5 C8 H10 244.0 224.4
N4 C5 C6 C8 240.9 245.0
C6 C5 N4 H8 219.8 75.5
N4 C5 C6 H9 132.6 130.2
C6 C5 C8 N7 356.8 352.3
C6 C5 C8 S11 268.5 248.2
C8 C5 C6 H9 251.7 245.1
C6 C5 C8 H10 115.4 109.4
O17 C6 C5 N7 183.4 180.0
C5 C6 N7 C8 356.2 351.4
C5 C6 N7 C9 164.9 113.6
N4 C5 C8 C6 128.5 115.0
C8 C5 N4 H8 114.2 336.4
N4 C5 C8 H9 237.5 229.9
C8 C5 C6 N7 3.5 8.3
C6 C5 C8 H9 109.0 114.9
C6 N7 C8 C5 3.7 8.6
N7 C8 C5 S11 88.3 104.1
C5 C8 N7 C9 192.8 245.0
N7 C8 C5 H10 241.4 243.0
C5 C8 S11 C10 124.3 112.4
S11 C8 C5 H10 153.0 138.9
O17 C6 C5 C8 186.9 188.3
C5 C6 O17 N7 175.1 180.0
O17 C6 C5 H9 295.2 303.2
O17 C6 N7 C8 172.6 171.4
O17 C6 N7 C9 341.3 293.6
N7 C6 C5 C8 3.5 8.3
N7 C6 C5 H9 111.8 123.2
C5 C8 N7 C6 3.7 8.6
C6 N7 C8 S11 129.2 122.4
C8 N7 C6 C9 191.3 237.8
C6 N7 C8 H10 247.1 252.2
C6 N7 C9 C10 213.6 221.9
C6 N7 C9 C13 79.8 101.7
C6 N7 C9 H17 323.4 342.2
C5 C8 N7 S11 234.5 246.1
N7 C8 C5 H9 247.8 237.4
C5 C8 N7 H10 116.6 116.4
C6 N7 C8 C9 170.9 123.6
N7 C8 S11 C10 40.5 21.8
S11 C8 N7 H10 242.1 230.3
C8 N7 C9 C10 20.3 334.1
C8 N7 C9 C13 246.4 213.9
C8 N7 C9 H17 130.0 94.4
C5 C8 S11 N7 83.8 90.6
S11 C8 C5 H9 159.5 133.3
C5 C8 S11 H10 206.2 221.0
S11 C8 N7 C9 318.3 358.8
N7 C8 S11 H10 122.4 130.3
C8 S11 C10 C15 206.2 208.4
C8 S11 C10 C12 88.6 83.8
C6 N7 C9 C8 193.4 247.8
C9 N7 C8 S11 318.3 358.8
C9 N7 C8 H10 76.2 128.6
N7 C9 C13 O16 276.1 18.5
N7 C9 C13 O14 96.6 198.6
C13 C9 N7 H17 116.4 119.5
C10 S11 C8 H10 278.1 251.5
N7 C9 C10 S11 13.6 38.4
C12 C10 S11 C15 242.5 235.3
S11 C10 C15 H14 180.0 58.5
S11 C10 C15 H15 300.0 178.6
S11 C10 C15 H16 60.0 298.5
S11 C10 C12 H11 180.0 61.5
S11 C10 C12 H12 300.0 181.4
S11 C10 C12 H13 60.0 301.5
N7 C9 C10 C13 228.2 239.8
N7 C9 C10 H17 110.4 120.2
C9 C10 C15 H14 66.9 308.0
C9 C10 C15 H15 186.9 68.1
C9 C10 C15 H16 306.9 188.0
C9 C10 C12 H11 294.6 172.0
C9 C10 C12 H12 54.6 291.9
C9 C10 C12 H13 174.6 52.0
N7 C9 C13 C10 125.8 120.9
N7 C9 C13 H17 243.3 240.5
O14 C13 C9 O16 180.5 180.0
C9 C13 O14 H18 179.6 180.0
N7 C9 C10 C15 131.1 156.1
S11 C10 C15 C12 241.8 235.3
C15 C10 C12 H11 61.3 296.8
C15 C10 C12 H12 181.2 56.7
C15 C10 C12 H13 301.3 176.7
H14 C15 C10 H15 240.0 239.9
H14 C15 C10 H16 120.0 120.0
H15 C15 C10 H16 240.0 240.1
N7 C9 C10 C12 255.4 280.8
S11 C10 C12 C15 118.7 124.7
C12 C10 C15 H14 298.2 183.2
C12 C10 C15 H15 58.2 303.3
C12 C10 C15 H16 178.2 63.2
H11 C12 C10 H12 240.0 240.1
H11 C12 C10 H13 120.0 120.1
H12 C12 C10 H13 240.0 240.0
C9 C13 O16 O14 180.5 180.0
O16 C13 C9 H17 32.8 138.1
O16 C13 O14 H18 0.0 0.1
C9 C13 O14 O16 179.5 180.0
O14 C13 C9 H17 213.2 318.1
C23 C24 H1 C19 180.0 180.3
H1 C24 C19 C20 179.9 180.3
H1 C24 C19 O1 359.7 0.0
H2 C23 C24 C19 180.2 180.0
H2 C23 C24 H1 0.2 359.7
H3 C22 C21 C20 180.6 180.1
H3 C22 C21 H4 0.5 0.1
H3 C22 C23 H2 359.6 359.9
C22 C21 H4 C20 180.0 180.0
H4 C21 C22 H3 0.5 0.1
H4 C21 C20 C19 179.5 180.0
H4 C21 C20 H5 359.5 360.0
C21 C20 H5 C19 180.0 180.0
H5 C20 C21 H4 359.5 360.0
H5 C20 C19 O1 0.4 0.3
O1 C2 H6 C3 233.9 240.0
O1 C2 H6 H7 116.9 119.9
H6 C2 C3 N4 341.4 60.0
H6 C2 C3 O18 159.8 239.9
C3 C2 H6 H7 243.1 240.0
O1 C2 H7 C3 126.2 120.1
O1 C2 H7 H6 243.1 240.0
H7 C2 C3 N4 223.4 300.0
H7 C2 C3 O18 41.8 120.0
C3 C2 H7 H6 116.9 120.0
C3 N4 H8 C5 180.0 180.0
H8 N4 C5 C6 219.8 75.5
H8 N4 C5 C8 114.2 336.4
H8 N4 C5 H9 352.3 206.0
N4 C5 H9 C6 219.2 229.5
N4 C5 H9 C8 126.0 130.4
H9 C5 N4 H8 352.3 206.0
C6 C5 H9 C8 266.8 260.9
H9 C5 C6 N7 111.8 123.2
H9 C5 C8 N7 247.8 237.4
H9 C5 C8 S11 159.5 133.3
H9 C5 C8 H10 6.4 354.5
C5 C8 H10 N7 262.7 262.9
C5 C8 H10 S11 156.4 138.4
H10 C8 C5 H9 6.4 354.5
N7 C8 H10 S11 253.6 235.5
H10 C8 N7 C9 76.2 128.6
H10 C8 S11 C10 278.1 251.5
H11 C12 C10 C15 61.3 296.8
C10 C12 H11 H12 120.0 119.9
C10 C12 H11 H13 240.0 239.9
H12 C12 H11 H13 120.0 120.0
H12 C12 C10 C15 181.2 56.7
C10 C12 H12 H11 240.0 240.1
C10 C12 H12 H13 120.0 120.1
H11 C12 H12 H13 240.0 240.0
H13 C12 C10 C15 301.3 176.7
C10 C12 H13 H11 120.0 120.0
C10 C12 H13 H12 240.0 240.0
H11 C12 H13 H12 120.0 119.9
C10 C15 H14 H15 120.0 120.0
C10 C15 H14 H16 240.0 240.0
H15 C15 H14 H16 120.0 120.0
C10 C15 H15 H14 240.0 239.9
C10 C15 H15 H16 120.0 119.9
H14 C15 H15 H16 240.0 240.0
C10 C15 H16 H14 120.0 120.0
C10 C15 H16 H15 240.0 240.1
H14 C15 H16 H15 120.0 120.0
N7 C9 H17 C10 251.3 239.1
N7 C9 H17 C13 123.9 119.5
H17 C9 C13 O16 32.8 138.1
H17 C9 C13 O14 213.2 318.1
H18 O14 C13 O16 0.0 0.1