PDB Chemical Component PNN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PNN

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O8 C7 1.213 1.213
C7 N4 1.389 1.397
C7 C6 1.524 1.514
N4 C3 1.471 1.467
N4 C5 1.485 1.482
C3 C11 1.517 1.508
C3 C2 1.574 1.553
C3 HC3 1.116 1.090
C11 O13 1.202 1.342
C11 O12 1.343 1.207
O13 HXT 0.950 0.967
C2 C10 1.514 1.530
C2 C9 1.537 1.530
C2 S1 1.852 1.849
C10 H101 1.114 1.090
C10 H102 1.115 1.089
C10 H103 1.115 1.090
C9 HC91 1.114 1.090
C9 HC92 1.116 1.090
C9 HC93 1.115 1.090
S1 C5 1.822 1.838
C5 C6 1.562 1.529
C5 HC5 1.115 1.090
C6 N14 1.439 1.464
C6 HC6 1.115 1.090
N14 C15 1.354 1.348
N14 H14 1.020 0.970
C15 O16 1.197 1.212
C15 C17 1.518 1.506
C17 C18 1.549 1.507
C17 H171 1.115 1.090
C17 H172 1.115 1.090
C18 C19 1.394 1.381
C18 C23 1.373 1.382
C19 C20 1.419 1.382
C19 H19 1.103 1.080
C20 C21 1.410 1.383
C20 H20 1.103 1.080
C21 C22 1.347 1.381
C21 H21 1.102 1.080
C22 C23 1.407 1.382
C22 H22 1.103 1.080
C23 H23 1.104 1.081

Bond Angles for PNN

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O8 C7 N4 127.6 133.9
O8 C7 C6 138.9 134.0
N4 C7 C6 93.1 92.1
C7 N4 C3 126.9 116.1
C7 N4 C5 92.0 92.5
C7 C6 C5 84.1 86.3
C7 C6 N14 113.8 113.9
C7 C6 HC6 124.4 113.7
C3 N4 C5 117.6 115.8
N4 C3 C11 108.4 109.0
N4 C3 C2 106.2 111.7
N4 C3 HC3 114.1 109.0
N4 C5 S1 101.9 103.3
N4 C5 C6 87.9 88.2
N4 C5 HC5 130.4 116.7
C11 C3 C2 114.4 110.0
C11 C3 HC3 105.8 109.0
C3 C11 O13 129.7 120.0
C3 C11 O12 109.9 120.0
C2 C3 HC3 108.1 108.0
C3 C2 C10 112.3 111.6
C3 C2 C9 110.7 111.6
C3 C2 S1 102.5 98.6
O13 C11 O12 120.4 120.0
C11 O13 HXT 129.7 120.1
C10 C2 C9 114.9 111.3
C10 C2 S1 109.2 111.6
C2 C10 H101 112.2 109.5
C2 C10 H102 111.1 109.5
C2 C10 H103 111.1 109.4
C9 C2 S1 106.3 111.6
C2 C9 HC91 110.7 109.5
C2 C9 HC92 111.8 109.5
C2 C9 HC93 111.8 109.5
C2 S1 C5 90.5 97.1
H101 C10 H102 111.2 109.5
H101 C10 H103 111.2 109.4
H102 C10 H103 99.2 109.4
HC91 C9 HC92 111.7 109.5
HC91 C9 HC93 111.8 109.5
HC92 C9 HC93 98.6 109.4
S1 C5 C6 120.8 114.1
S1 C5 HC5 102.8 115.0
C6 C5 HC5 114.2 116.0
C5 C6 N14 115.8 113.8
C5 C6 HC6 122.7 113.7
N14 C6 HC6 97.5 113.0
C6 N14 C15 118.3 120.0
C6 N14 H14 123.8 120.0
C15 N14 H14 118.0 120.0
N14 C15 O16 131.3 120.0
N14 C15 C17 112.6 120.0
O16 C15 C17 116.0 120.0
C15 C17 C18 113.6 109.5
C15 C17 H171 110.7 109.4
C15 C17 H172 110.6 109.5
C18 C17 H171 110.8 109.5
C18 C17 H172 110.8 109.5
C17 C18 C19 117.9 120.0
C17 C18 C23 119.8 120.0
H171 C17 H172 99.6 109.4
C19 C18 C23 122.3 120.0
C18 C19 C20 122.6 120.0
C18 C19 H19 117.7 120.0
C18 C23 C22 116.3 120.0
C18 C23 H23 120.7 120.0
C20 C19 H19 119.7 120.0
C19 C20 C21 112.2 120.0
C19 C20 H20 124.1 120.0
C21 C20 H20 123.7 120.0
C20 C21 C22 125.7 120.0
C20 C21 H21 119.7 120.0
C22 C21 H21 114.6 120.0
C21 C22 C23 120.9 120.0
C21 C22 H22 117.4 120.0
C23 C22 H22 121.7 120.0
C22 C23 H23 123.0 120.0

Torsion Angles for PNN

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N4 C7 O8 C6 170.8 180.9
O8 C7 N4 C3 326.9 292.4
O8 C7 N4 C5 199.6 172.0
O8 C7 C6 C5 159.8 187.8
O8 C7 C6 N14 44.2 73.4
O8 C7 C6 HC6 285.9 302.1
O8 C7 N4 C6 186.0 179.3
N4 C7 C6 C5 347.1 7.2
N4 C7 C6 N14 231.5 252.8
N4 C7 C6 HC6 113.1 121.4
C3 N4 C7 C5 127.3 120.5
C7 N4 C3 C11 116.1 104.6
C7 N4 C3 C2 239.6 226.4
C7 N4 C3 HC3 358.5 345.7
C7 N4 C5 S1 107.8 121.7
C7 N4 C5 C6 346.8 7.3
C7 N4 C5 HC5 226.3 248.9
O8 C7 C6 N4 172.7 180.7
C6 C7 N4 C3 140.8 113.1
C6 C7 N4 C5 13.5 352.6
N4 C5 C6 C7 12.1 353.3
S1 C5 C6 C7 269.5 249.5
C7 C6 C5 HC5 146.1 112.2
C5 C6 C7 N14 115.6 114.4
C5 C6 C7 HC6 234.0 245.7
N14 C6 C7 HC6 118.4 131.3
C7 C6 N14 C15 221.6 246.7
C7 C6 N14 H14 41.5 66.8
C3 N4 C7 C6 140.8 113.1
C7 N4 C3 C5 243.8 253.1
C3 N4 C5 S1 333.7 1.0
C3 N4 C5 C6 212.7 246.6
C3 N4 C5 HC5 92.1 128.2
C11 C3 N4 C2 236.6 238.2
C11 C3 N4 HC3 117.6 118.9
N4 C3 C11 O13 10.0 208.5
N4 C3 C11 O12 191.2 28.5
C2 C3 N4 HC3 241.0 240.7
N4 C3 C2 C10 275.2 279.2
N4 C3 C2 C9 145.3 154.0
N4 C3 C2 S1 32.3 36.6
C5 N4 C7 C6 13.5 352.6
C7 N4 C5 C3 134.2 120.7
C7 C6 C5 N4 12.1 353.3
C5 N4 C3 C11 232.3 211.5
C5 N4 C3 C2 355.8 333.3
C5 N4 C3 HC3 114.7 92.6
C2 S1 C5 N4 38.8 19.2
S1 C5 N4 C6 121.0 114.4
S1 C5 N4 HC5 241.6 232.8
C6 C5 N4 HC5 120.5 118.4
N4 C5 C6 N14 125.7 107.7
N4 C5 C6 HC6 244.5 238.9
C11 C3 N4 C5 232.3 211.5
N4 C3 C11 C2 118.3 122.8
N4 C3 C11 HC3 237.2 241.0
C2 C3 C11 HC3 118.9 118.3
C11 C3 C2 C10 34.7 40.4
C11 C3 C2 C9 264.8 275.2
C11 C3 C2 S1 151.8 157.8
O13 C11 C3 O12 178.8 180.0
C3 C11 O13 HXT 180.1 180.0
C2 C3 N4 C5 355.8 333.3
N4 C3 C2 C11 240.5 238.8
N4 C3 C2 HC3 122.8 119.9
C11 C3 C2 HC3 242.4 241.1
C2 C3 C11 O13 251.7 85.8
C2 C3 C11 O12 72.9 265.7
C10 C2 C3 C9 129.8 125.2
C10 C2 C3 S1 242.9 242.6
C3 C2 C10 H101 180.0 175.3
C3 C2 C10 H102 305.3 295.4
C3 C2 C10 H103 54.7 55.4
C9 C2 C3 S1 113.1 117.4
C3 C2 C9 HC91 180.0 184.7
C3 C2 C9 HC92 305.3 304.7
C3 C2 C9 HC93 54.7 64.7
C3 C2 S1 C5 318.0 328.5
HC3 C3 N4 C5 114.7 92.6
N4 C3 HC3 C11 119.1 118.9
N4 C3 HC3 C2 242.1 238.5
C11 C3 HC3 C2 123.0 119.5
HC3 C3 C11 O13 132.8 327.5
HC3 C3 C11 O12 314.0 147.5
HC3 C3 C2 C10 152.3 159.3
HC3 C3 C2 C9 22.5 34.1
HC3 C3 C2 S1 269.4 276.7
O13 C11 C3 C2 251.7 85.8
O13 C11 C3 HC3 132.8 327.5
C3 C11 O13 O12 181.3 180.0
O12 C11 C3 C2 72.9 265.7
O12 C11 C3 HC3 314.0 147.5
C3 C11 O12 O13 178.9 180.0
O12 C11 O13 HXT 358.7 0.0
HXT O13 C11 O12 358.7 0.0
C10 C2 C3 HC3 152.3 159.3
C3 C2 C10 C9 232.4 234.7
C3 C2 C10 S1 113.0 109.3
C9 C2 C10 S1 240.6 234.6
C10 C2 C9 HC91 51.6 59.3
C10 C2 C9 HC92 176.8 179.3
C10 C2 C9 HC93 286.2 299.3
C10 C2 S1 C5 77.2 85.9
H101 C10 C2 H102 234.7 239.9
H101 C10 C2 H103 125.3 119.9
H102 C10 C2 H103 250.5 240.0
C9 C2 C3 HC3 22.5 34.1
C3 C2 C9 C10 128.4 125.4
C3 C2 C9 S1 249.4 250.8
C10 C2 C9 S1 121.0 125.4
C9 C2 C10 H101 307.6 300.6
C9 C2 C10 H102 72.9 60.7
C9 C2 C10 H103 182.3 180.7
C9 C2 S1 C5 201.8 211.1
HC91 C9 C2 HC92 234.8 240.0
HC91 C9 C2 HC93 125.4 120.0
HC92 C9 C2 HC93 250.6 240.0
N4 C5 S1 C2 38.8 19.2
S1 C2 C3 HC3 269.4 276.7
C3 C2 S1 C10 240.7 242.6
C3 C2 S1 C9 116.2 117.4
C10 C2 S1 C9 235.5 234.8
S1 C2 C10 H101 67.0 66.0
S1 C2 C10 H102 192.3 186.1
S1 C2 C10 H103 301.7 306.1
S1 C2 C9 HC91 290.6 293.9
S1 C2 C9 HC92 55.8 53.9
S1 C2 C9 HC93 165.3 173.9
C2 S1 C5 C6 133.5 113.3
C2 S1 C5 HC5 262.1 251.0
H101 C10 C2 C9 307.6 300.6
H101 C10 C2 S1 67.0 66.0
C2 C10 H101 H102 125.2 120.1
C2 C10 H101 H103 234.8 240.1
H102 C10 H101 H103 109.6 120.0
H102 C10 C2 C9 72.9 60.7
H102 C10 C2 S1 192.3 186.1
C2 C10 H102 H101 234.2 239.9
C2 C10 H102 H103 117.0 120.0
H101 C10 H102 H103 242.8 240.1
H103 C10 C2 C9 182.3 180.7
H103 C10 C2 S1 301.7 306.1
C2 C10 H103 H101 125.8 120.0
C2 C10 H103 H102 243.0 240.0
H101 C10 H103 H102 117.2 120.0
HC91 C9 C2 S1 290.6 293.9
C2 C9 HC91 HC92 125.2 120.0
C2 C9 HC91 HC93 234.7 240.0
HC92 C9 HC91 HC93 109.4 120.0
HC92 C9 C2 S1 55.8 53.9
C2 C9 HC92 HC91 235.4 240.0
C2 C9 HC92 HC93 117.6 120.0
HC91 C9 HC92 HC93 242.3 240.0
HC93 C9 C2 S1 165.3 173.9
C2 C9 HC93 HC91 124.7 120.0
C2 C9 HC93 HC92 242.4 240.0
HC91 C9 HC93 HC92 117.6 120.0
C7 C6 C5 S1 269.5 249.5
N4 C5 S1 C6 265.3 265.9
N4 C5 S1 HC5 136.7 128.2
C6 C5 S1 HC5 231.4 222.3
S1 C5 C6 N14 23.1 4.0
S1 C5 C6 HC6 142.0 135.2
C7 C6 C5 N14 246.4 245.5
C7 C6 C5 HC6 127.5 114.3
N4 C5 C6 S1 102.6 103.8
N4 C5 C6 HC5 225.9 241.0
S1 C5 C6 HC5 123.4 137.2
N14 C6 C5 HC6 241.1 228.8
C5 C6 N14 C15 126.6 150.0
C5 C6 N14 H14 306.5 330.0
N4 C5 HC5 S1 241.9 238.8
N4 C5 HC5 C6 109.3 101.9
S1 C5 HC5 C6 227.4 223.1
HC5 C5 C6 N14 259.7 226.7
HC5 C5 C6 HC6 18.6 357.9
C7 C6 N14 C5 95.1 96.7
C7 C6 N14 HC6 227.1 228.3
N14 C6 C5 HC5 259.7 226.7
C5 C6 N14 HC6 132.0 131.6
C15 N14 C6 H14 180.1 180.0
C6 N14 C15 O16 357.5 359.9
C6 N14 C15 C17 181.2 180.1
C7 C6 HC6 C5 253.0 263.4
C7 C6 HC6 N14 125.7 131.8
HC6 C6 C5 HC5 18.6 357.9
C5 C6 HC6 N14 232.7 228.4
HC6 C6 N14 C15 354.5 18.4
HC6 C6 N14 H14 174.5 198.5
C15 N14 C6 HC6 354.5 18.4
C6 N14 C15 H14 179.9 180.0
O16 C15 N14 C17 176.4 179.9
N14 C15 C17 C18 120.5 180.0
N14 C15 C17 H171 245.8 300.0
N14 C15 C17 H172 355.2 59.9
H14 N14 C6 HC6 174.5 198.5
C6 N14 H14 C15 180.1 180.0
H14 N14 C15 O16 177.6 179.9
H14 N14 C15 C17 1.2 0.0
O16 C15 N14 H14 177.6 179.9
N14 C15 O16 C17 183.7 180.1
O16 C15 C17 C18 303.5 0.1
O16 C15 C17 H171 68.8 120.1
O16 C15 C17 H172 178.2 240.0
C17 C15 N14 H14 1.2 0.0
N14 C15 C17 O16 177.0 179.9
C18 C17 C15 H171 234.7 240.0
C18 C17 C15 H172 125.3 120.1
C15 C17 C18 C19 106.8 90.0
C15 C17 C18 C23 287.0 269.6
H171 C17 C15 H172 250.6 240.1
C15 C17 C18 H171 125.3 119.9
C15 C17 C18 H172 234.8 239.9
H171 C17 C18 H172 109.5 120.0
C19 C18 C17 C23 179.8 180.4
C17 C18 C19 C20 177.1 180.0
C17 C18 C19 H19 357.0 360.0
C17 C18 C23 C22 182.8 179.8
C17 C18 C23 H23 2.8 0.3
C15 C17 H171 C18 233.1 240.0
C15 C17 H171 H172 116.5 120.0
C18 C17 H171 H172 243.3 240.0
H171 C17 C18 C19 341.5 330.0
H171 C17 C18 C23 161.7 149.7
C15 C17 H172 C18 126.9 120.1
C15 C17 H172 H171 243.5 240.1
C18 C17 H172 H171 116.6 120.0
H172 C17 C18 C19 232.0 210.1
H172 C17 C18 C23 52.2 29.7
C19 C18 C17 H171 341.5 330.0
C19 C18 C17 H172 232.0 210.1
C17 C18 C19 C23 180.2 179.6
C19 C18 C23 C22 3.0 359.4
C19 C18 C23 H23 183.0 180.0
C20 C19 C18 H19 180.0 180.0
C18 C19 C20 C21 1.6 360.0
C18 C19 C20 H20 181.6 179.9
C23 C18 C17 H171 161.7 149.7
C23 C18 C17 H172 52.2 29.7
C17 C18 C23 C19 179.8 180.4
C23 C18 C19 C20 356.8 0.3
C23 C18 C19 H19 176.8 180.3
C21 C22 C23 C18 358.3 0.5
C18 C23 C22 H22 178.3 180.3
C22 C23 C18 H23 180.0 179.5
C20 C19 C18 C23 356.8 0.3
C18 C19 C20 H19 180.0 180.0
C21 C20 C19 H20 180.0 180.1
C19 C20 C21 C22 359.6 359.9
C19 C20 C21 H21 179.6 180.0
H19 C19 C18 C23 176.8 180.3
C18 C19 H19 C20 180.0 180.0
H19 C19 C20 C21 181.7 180.0
H19 C19 C20 H20 1.7 359.9
C21 C20 C19 H19 181.7 180.0
C19 C20 C21 H20 180.0 179.9
C22 C21 C20 H21 180.0 179.9
C20 C21 C22 C23 0.5 359.9
C20 C21 C22 H22 180.4 180.0
H20 C20 C19 H19 1.7 359.9
C19 C20 H20 C21 180.0 180.1
H20 C20 C21 C22 179.7 180.0
H20 C20 C21 H21 359.7 0.1
C18 C23 C22 C21 358.3 0.5
C22 C21 C20 H20 179.7 180.0
C20 C21 C22 H21 180.0 180.1
C23 C22 C21 H22 180.0 179.9
C21 C22 C23 H23 178.3 179.9
H21 C21 C20 H20 359.7 0.1
C20 C21 H21 C22 180.0 179.9
H21 C21 C22 C23 180.5 179.8
H21 C21 C22 H22 0.4 359.9
C18 C23 C22 H23 180.0 180.5
C23 C22 C21 H21 180.5 179.8
C21 C22 C23 H22 180.0 180.1
H22 C22 C21 H21 0.4 359.9
C21 C22 H22 C23 180.0 179.9
H22 C22 C23 H23 358.3 359.8
C18 C23 H23 C22 180.0 179.5
H23 C23 C22 H22 358.3 359.8