PDB Chemical Component PNM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PNM

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O8 C7 1.215 1.207
C7 C6 1.511 1.507
C7 HC7 1.103 1.080
N4 C3 1.487 1.465
N4 C5 1.472 1.492
N4 H4 1.020 1.009
C3 C11 1.534 1.506
C3 C2 1.538 1.545
C3 HC3 1.115 1.091
C11 O13 1.251 1.342
C11 O12 1.223 1.208
O13 HXT 0.950 0.967
C2 C10 1.524 1.530
C2 C9 1.535 1.530
C2 S1 1.821 1.844
C10 H101 1.116 1.090
C10 H102 1.115 1.090
C10 H103 1.115 1.089
C9 HC91 1.116 1.090
C9 HC92 1.115 1.090
C9 HC93 1.114 1.090
S1 C5 1.840 1.848
C5 C6 1.516 1.530
C5 HC5 1.115 1.090
C6 N14 1.460 1.465
C6 HC6 1.115 1.090
N14 C15 1.340 1.348
N14 H14 1.020 0.970
C15 O16 1.239 1.212
C15 C17 1.575 1.506
C17 C18 1.521 1.507
C17 H171 1.116 1.089
C17 H172 1.115 1.091
C18 C19 1.394 1.381
C18 C23 1.402 1.382
C19 C20 1.414 1.382
C19 H19 1.104 1.080
C20 C21 1.406 1.382
C20 H20 1.104 1.080
C21 C22 1.383 1.381
C21 H21 1.103 1.080
C22 C23 1.395 1.382
C22 H22 1.103 1.080
C23 H23 1.103 1.081

Bond Angles for PNM

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O8 C7 C6 120.0 120.0
O8 C7 HC7 109.4 120.0
C6 C7 HC7 130.6 120.0
C7 C6 C5 104.7 109.5
C7 C6 N14 113.9 109.5
C7 C6 HC6 110.9 109.5
C3 N4 C5 106.5 112.4
C3 N4 H4 113.3 106.6
N4 C3 C11 112.0 108.7
N4 C3 C2 108.9 113.8
N4 C3 HC3 110.3 108.6
C5 N4 H4 113.3 106.7
N4 C5 S1 111.9 99.5
N4 C5 C6 109.2 111.4
N4 C5 HC5 110.6 111.4
C11 C3 C2 114.9 108.5
C11 C3 HC3 103.6 108.6
C3 C11 O13 115.7 120.0
C3 C11 O12 121.6 120.0
C2 C3 HC3 107.0 108.6
C3 C2 C10 111.9 110.9
C3 C2 C9 111.6 111.0
C3 C2 S1 102.9 101.8
O13 C11 O12 122.3 120.0
C11 O13 HXT 115.7 120.0
C10 C2 C9 109.9 110.8
C10 C2 S1 110.8 111.0
C2 C10 H101 112.0 109.5
C2 C10 H102 111.3 109.5
C2 C10 H103 111.3 109.5
C9 C2 S1 109.5 111.0
C2 C9 HC91 111.6 109.4
C2 C9 HC92 111.4 109.4
C2 C9 HC93 111.4 109.5
C2 S1 C5 90.5 97.2
H101 C10 H102 111.2 109.4
H101 C10 H103 111.3 109.5
H102 C10 H103 99.1 109.4
HC91 C9 HC92 111.4 109.5
HC91 C9 HC93 111.4 109.5
HC92 C9 HC93 99.0 109.5
S1 C5 C6 116.1 111.4
S1 C5 HC5 102.8 111.4
C6 C5 HC5 105.8 111.2
C5 C6 N14 112.6 109.4
C5 C6 HC6 112.2 109.5
N14 C6 HC6 102.7 109.5
C6 N14 C15 121.7 120.0
C6 N14 H14 123.6 120.0
C15 N14 H14 114.7 120.0
N14 C15 O16 121.9 120.0
N14 C15 C17 118.4 120.0
O16 C15 C17 119.7 120.0
C15 C17 C18 113.3 109.5
C15 C17 H171 110.8 109.6
C15 C17 H172 110.8 109.5
C18 C17 H171 110.8 109.4
C18 C17 H172 110.8 109.4
C17 C18 C19 121.0 120.0
C17 C18 C23 120.6 120.0
H171 C17 H172 99.5 109.4
C19 C18 C23 118.2 120.0
C18 C19 C20 120.8 120.0
C18 C19 H19 118.9 120.0
C18 C23 C22 121.4 120.0
C18 C23 H23 119.6 120.0
C20 C19 H19 120.3 120.0
C19 C20 C21 119.7 120.0
C19 C20 H20 120.4 120.1
C21 C20 H20 119.9 119.9
C20 C21 C22 119.5 120.0
C20 C21 H21 121.0 120.0
C22 C21 H21 119.4 120.0
C21 C22 C23 120.4 120.0
C21 C22 H22 119.3 120.0
C23 C22 H22 120.3 119.9
C22 C23 H23 119.0 120.1

Torsion Angles for PNM

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C7 O8 HC7 180.0 180.0
O8 C7 C6 C5 103.1 120.0
O8 C7 C6 N14 339.6 0.0
O8 C7 C6 HC6 224.4 240.0
O8 C7 C6 HC7 180.0 180.0
N4 C5 C6 C7 295.7 291.6
S1 C5 C6 C7 168.1 181.5
C7 C6 C5 HC5 54.9 56.6
C5 C6 C7 N14 123.5 120.0
C5 C6 C7 HC6 238.7 240.0
N14 C6 C7 HC6 115.3 120.0
C7 C6 N14 C15 213.1 270.0
C7 C6 N14 H14 33.2 90.0
O8 C7 HC7 C6 180.0 180.0
HC7 C7 C6 C5 283.1 300.0
HC7 C7 C6 N14 159.7 180.0
HC7 C7 C6 HC6 44.4 59.9
C5 N4 C3 H4 125.2 243.4
C3 N4 C5 S1 16.2 319.5
C3 N4 C5 C6 246.3 201.9
C3 N4 C5 HC5 130.2 77.1
C11 C3 N4 C2 231.9 239.0
C11 C3 N4 HC3 114.8 118.0
N4 C3 C11 O13 227.3 208.6
N4 C3 C11 O12 40.0 28.5
C2 C3 N4 HC3 242.9 238.9
N4 C3 C2 C10 165.5 236.2
N4 C3 C2 C9 289.1 112.5
N4 C3 C2 S1 46.4 354.4
C7 C6 C5 N4 295.7 291.6
C3 N4 C5 H4 234.8 116.5
C5 N4 C3 C11 191.3 271.5
C5 N4 C3 C2 319.4 32.4
C5 N4 C3 HC3 76.5 153.5
C2 S1 C5 N4 9.1 32.1
S1 C5 N4 C6 130.0 117.6
S1 C5 N4 HC5 246.1 242.4
C6 C5 N4 HC5 116.1 124.8
N4 C5 C6 N14 60.0 51.6
N4 C5 C6 HC6 175.3 171.6
C3 N4 H4 C5 121.5 239.7
H4 N4 C3 C11 66.1 28.1
H4 N4 C3 C2 194.2 149.0
H4 N4 C3 HC3 311.3 270.1
H4 N4 C5 S1 141.4 203.0
H4 N4 C5 C6 11.5 85.4
H4 N4 C5 HC5 255.4 320.6
C11 C3 N4 C5 191.3 271.5
C11 C3 N4 H4 66.1 28.1
N4 C3 C11 C2 124.9 124.2
N4 C3 C11 HC3 241.2 242.0
C2 C3 C11 HC3 116.3 117.9
C11 C3 C2 C10 291.9 357.3
C11 C3 C2 C9 55.6 233.6
C11 C3 C2 S1 172.9 115.5
O13 C11 C3 O12 187.3 180.1
C3 C11 O13 HXT 180.0 180.0
C2 C3 N4 C5 319.4 32.4
C2 C3 N4 H4 194.2 149.0
N4 C3 C2 C11 233.5 238.9
N4 C3 C2 HC3 119.2 121.1
C11 C3 C2 HC3 245.6 242.1
C2 C3 C11 O13 102.5 84.4
C2 C3 C11 O12 275.2 264.3
C10 C2 C3 C9 236.3 123.7
C10 C2 C3 S1 119.0 241.9
C3 C2 C10 H101 180.0 176.9
C3 C2 C10 H102 305.2 296.9
C3 C2 C10 H103 54.8 56.9
C9 C2 C3 S1 242.7 118.2
C3 C2 C9 HC91 180.0 183.1
C3 C2 C9 HC92 305.2 303.0
C3 C2 C9 HC93 54.8 63.0
C3 C2 S1 C5 329.8 343.9
HC3 C3 N4 C5 76.5 153.5
HC3 C3 N4 H4 311.3 270.1
N4 C3 HC3 C11 120.0 118.0
N4 C3 HC3 C2 241.7 235.8
C11 C3 HC3 C2 121.8 117.8
HC3 C3 C11 O13 346.2 326.5
HC3 C3 C11 O12 158.8 146.4
HC3 C3 C2 C10 46.3 115.2
HC3 C3 C2 C9 170.0 351.5
HC3 C3 C2 S1 287.3 233.3
O13 C11 C3 C2 102.5 84.4
O13 C11 C3 HC3 346.2 326.5
C3 C11 O13 O12 172.6 179.9
O12 C11 C3 C2 275.2 264.3
O12 C11 C3 HC3 158.8 146.4
C3 C11 O12 O13 187.8 180.1
O12 C11 O13 HXT 7.4 0.1
HXT O13 C11 O12 7.4 0.1
C10 C2 C3 HC3 46.3 115.2
C3 C2 C10 C9 124.6 236.2
C3 C2 C10 S1 245.8 112.4
C9 C2 C10 S1 121.1 236.2
C10 C2 C9 HC91 304.8 59.3
C10 C2 C9 HC92 70.0 179.3
C10 C2 C9 HC93 179.6 299.3
C10 C2 S1 C5 210.0 102.0
H101 C10 C2 H102 234.8 240.0
H101 C10 C2 H103 125.3 120.1
H102 C10 C2 H103 250.5 240.0
C9 C2 C3 HC3 170.0 351.5
C3 C2 C9 C10 235.2 123.8
C3 C2 C9 S1 113.2 247.6
C10 C2 C9 S1 238.1 123.8
C9 C2 C10 H101 55.4 300.7
C9 C2 C10 H102 180.6 60.7
C9 C2 C10 H103 290.1 180.7
C9 C2 S1 C5 88.6 225.7
HC91 C9 C2 HC92 234.8 240.0
HC91 C9 C2 HC93 125.3 120.0
HC92 C9 C2 HC93 250.5 240.0
N4 C5 S1 C2 9.1 32.1
S1 C2 C3 HC3 287.3 233.3
C3 C2 S1 C10 119.8 241.9
C3 C2 S1 C9 241.2 118.2
C10 C2 S1 C9 121.4 236.3
S1 C2 C10 H101 294.3 64.5
S1 C2 C10 H102 59.5 184.5
S1 C2 C10 H103 169.0 304.5
S1 C2 C9 HC91 66.8 295.5
S1 C2 C9 HC92 192.0 55.5
S1 C2 C9 HC93 301.5 175.5
C2 S1 C5 C6 135.4 149.7
C2 S1 C5 HC5 250.4 274.5
H101 C10 C2 C9 55.4 300.7
H101 C10 C2 S1 294.3 64.5
C2 C10 H101 H102 125.3 120.0
C2 C10 H101 H103 234.7 240.0
H102 C10 H101 H103 109.4 120.0
H102 C10 C2 C9 180.6 60.7
H102 C10 C2 S1 59.5 184.5
C2 C10 H102 H101 234.4 240.0
C2 C10 H102 H103 117.2 120.0
H101 C10 H102 H103 242.9 240.0
H103 C10 C2 C9 290.1 180.7
H103 C10 C2 S1 169.0 304.5
C2 C10 H103 H101 125.6 120.0
C2 C10 H103 H102 242.8 240.0
H101 C10 H103 H102 117.1 120.0
HC91 C9 C2 S1 66.8 295.5
C2 C9 HC91 HC92 125.2 119.9
C2 C9 HC91 HC93 234.7 240.0
HC92 C9 HC91 HC93 109.5 120.0
HC92 C9 C2 S1 192.0 55.5
C2 C9 HC92 HC91 234.7 240.1
C2 C9 HC92 HC93 117.4 120.0
HC91 C9 HC92 HC93 242.7 239.9
HC93 C9 C2 S1 301.5 175.5
C2 C9 HC93 HC91 125.3 120.0
C2 C9 HC93 HC92 242.6 240.0
HC91 C9 HC93 HC92 117.3 120.0
C7 C6 C5 S1 168.1 181.5
S1 C5 N4 H4 141.4 203.0
N4 C5 S1 C6 233.7 242.4
N4 C5 S1 HC5 118.7 117.6
C6 C5 S1 HC5 245.0 235.2
S1 C5 C6 N14 292.4 301.5
S1 C5 C6 HC6 47.7 61.4
C5 C6 C7 HC7 283.1 300.0
C7 C6 C5 N14 235.7 240.0
C7 C6 C5 HC6 120.4 120.0
C6 C5 N4 H4 11.5 85.4
N4 C5 C6 S1 127.6 110.2
N4 C5 C6 HC5 240.9 235.0
S1 C5 C6 HC5 113.3 124.9
N14 C6 C5 HC6 244.7 240.0
C5 C6 N14 C15 94.1 150.0
C5 C6 N14 H14 274.1 330.0
HC5 C5 N4 H4 255.4 320.6
N4 C5 HC5 S1 240.4 249.8
N4 C5 HC5 C6 118.2 125.0
S1 C5 HC5 C6 237.8 235.1
HC5 C5 C6 N14 179.1 176.6
HC5 C5 C6 HC6 294.5 296.5
N14 C6 C7 HC7 159.7 180.0
C7 C6 N14 C5 119.1 120.0
C7 C6 N14 HC6 240.0 239.9
N14 C6 C5 HC5 179.1 176.6
C5 C6 N14 HC6 120.9 120.0
C15 N14 C6 H14 180.0 180.0
C6 N14 C15 O16 6.1 0.0
C6 N14 C15 C17 183.5 179.9
HC6 C6 C7 HC7 44.4 59.9
C7 C6 HC6 C5 243.3 240.0
C7 C6 HC6 N14 122.1 120.1
HC6 C6 C5 HC5 294.5 296.5
C5 C6 HC6 N14 238.8 240.0
HC6 C6 N14 C15 333.1 30.0
HC6 C6 N14 H14 153.2 210.0
C15 N14 C6 HC6 333.1 30.0
C6 N14 C15 H14 180.0 180.0
O16 C15 N14 C17 182.5 180.1
N14 C15 C17 C18 76.6 180.0
N14 C15 C17 H171 201.8 300.1
N14 C15 C17 H172 311.3 60.1
H14 N14 C6 HC6 153.2 210.0
C6 N14 H14 C15 180.0 180.0
H14 N14 C15 O16 186.0 180.0
H14 N14 C15 C17 3.5 359.9
O16 C15 N14 H14 186.0 180.0
N14 C15 O16 C17 177.4 179.9
O16 C15 C17 C18 254.1 359.9
O16 C15 C17 H171 19.4 120.0
O16 C15 C17 H172 128.9 240.0
C17 C15 N14 H14 3.5 359.9
N14 C15 C17 O16 182.5 180.1
C18 C17 C15 H171 234.8 240.0
C18 C17 C15 H172 125.2 120.0
C15 C17 C18 C19 64.3 90.1
C15 C17 C18 C23 248.4 269.8
H171 C17 C15 H172 250.5 240.0
C15 C17 C18 H171 125.2 120.1
C15 C17 C18 H172 234.7 240.0
H171 C17 C18 H172 109.5 119.9
C19 C18 C17 C23 175.9 180.3
C17 C18 C19 C20 184.9 180.1
C17 C18 C19 H19 4.9 0.0
C17 C18 C23 C22 175.4 179.7
C17 C18 C23 H23 355.4 0.2
C15 C17 H171 C18 233.4 239.9
C15 C17 H171 H172 116.7 120.0
C18 C17 H171 H172 243.3 240.1
H171 C17 C18 C19 299.1 329.9
H171 C17 C18 C23 123.1 149.7
C15 C17 H172 C18 126.6 120.0
C15 C17 H172 H171 243.3 239.9
C18 C17 H172 H171 116.7 119.9
H172 C17 C18 C19 189.6 210.0
H172 C17 C18 C23 13.6 29.7
C19 C18 C17 H171 299.1 329.9
C19 C18 C17 H172 189.6 210.0
C17 C18 C19 C23 184.0 179.7
C19 C18 C23 C22 359.4 359.5
C19 C18 C23 H23 179.3 179.9
C20 C19 C18 H19 180.0 180.1
C18 C19 C20 C21 359.6 359.9
C18 C19 C20 H20 179.7 180.0
C23 C18 C17 H171 123.1 149.7
C23 C18 C17 H172 13.6 29.7
C17 C18 C23 C19 176.1 180.3
C23 C18 C19 C20 0.9 0.4
C23 C18 C19 H19 180.9 180.3
C21 C22 C23 C18 359.9 0.5
C18 C23 C22 H22 179.9 180.4
C22 C23 C18 H23 180.0 179.5
C20 C19 C18 C23 0.9 0.4
C18 C19 C20 H19 180.0 179.9
C21 C20 C19 H20 180.0 179.9
C19 C20 C21 C22 359.6 0.1
C19 C20 C21 H21 179.6 180.0
H19 C19 C18 C23 180.9 180.3
C18 C19 H19 C20 180.0 180.1
H19 C19 C20 C21 179.6 179.9
H19 C19 C20 H20 359.7 0.0
C21 C20 C19 H19 179.6 179.9
C19 C20 C21 H20 180.0 180.1
C22 C21 C20 H21 180.0 180.1
C20 C21 C22 C23 0.7 359.8
C20 C21 C22 H22 180.7 179.9
H20 C20 C19 H19 359.7 0.0
C19 C20 H20 C21 180.0 179.9
H20 C20 C21 C22 179.6 180.0
H20 C20 C21 H21 359.6 359.9
C18 C23 C22 C21 359.9 0.5
C22 C21 C20 H20 179.6 180.0
C20 C21 C22 H21 180.0 179.9
C23 C22 C21 H22 180.0 179.9
C21 C22 C23 H23 179.9 180.0
H21 C21 C20 H20 359.6 359.9
C20 C21 H21 C22 180.0 180.1
H21 C21 C22 C23 180.7 179.8
H21 C21 C22 H22 0.7 360.0
C18 C23 C22 H23 180.0 180.5
C23 C22 C21 H21 180.7 179.8
C21 C22 C23 H22 180.0 180.1
H22 C22 C21 H21 0.7 360.0
C21 C22 H22 C23 180.0 179.9
H22 C22 C23 H23 359.9 359.9
C18 C23 H23 C22 180.0 179.5
H23 C23 C22 H22 359.9 359.9