PDB Chemical Component PNH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PNH
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.513 |
1.530 |
| C3 |
C4 |
1.547 |
1.506 |
| C3 |
C2 |
1.558 |
1.531 |
| C4 |
O6 |
1.233 |
1.208 |
| C4 |
C5 |
1.488 |
1.507 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C1 |
H1B |
1.100 |
1.090 |
| C3 |
H3 |
1.100 |
1.090 |
| C3 |
H3A |
1.100 |
1.090 |
| C5 |
H5 |
1.100 |
1.091 |
| C5 |
H5A |
1.100 |
1.090 |
| C5 |
H5B |
1.100 |
1.090 |
| C2 |
H2 |
1.100 |
1.090 |
| C2 |
H2A |
1.100 |
1.090 |
Bond Angles for PNH
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C2 |
C3 |
120.2 |
109.5 |
| C2 |
C1 |
H1 |
109.5 |
109.5 |
| C2 |
C1 |
H1A |
109.5 |
109.5 |
| C2 |
C1 |
H1B |
109.5 |
109.5 |
| C1 |
C2 |
H2 |
106.0 |
109.5 |
| C1 |
C2 |
H2A |
103.5 |
109.5 |
| C4 |
C3 |
C2 |
114.9 |
109.5 |
| C3 |
C4 |
O6 |
120.3 |
120.0 |
| C3 |
C4 |
C5 |
120.4 |
120.0 |
| C4 |
C3 |
H3 |
107.7 |
109.5 |
| C4 |
C3 |
H3A |
106.5 |
109.5 |
| C2 |
C3 |
H3 |
107.7 |
109.4 |
| C2 |
C3 |
H3A |
106.5 |
109.4 |
| C3 |
C2 |
H2 |
106.0 |
109.4 |
| C3 |
C2 |
H2A |
103.5 |
109.4 |
| O6 |
C4 |
C5 |
119.3 |
120.0 |
| C4 |
C5 |
H5 |
109.5 |
109.5 |
| C4 |
C5 |
H5A |
109.4 |
109.5 |
| C4 |
C5 |
H5B |
109.5 |
109.5 |
| H1 |
C1 |
H1A |
109.4 |
109.4 |
| H1 |
C1 |
H1B |
109.5 |
109.5 |
| H1A |
C1 |
H1B |
109.5 |
109.5 |
| H3 |
C3 |
H3A |
113.8 |
109.4 |
| H5 |
C5 |
H5A |
109.5 |
109.4 |
| H5 |
C5 |
H5B |
109.4 |
109.4 |
| H5A |
C5 |
H5B |
109.5 |
109.5 |
| H2 |
C2 |
H2A |
118.4 |
109.5 |
Torsion Angles for PNH
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C3 |
C2 |
C1 |
14.6 |
180.0 |
| C1 |
C2 |
C3 |
H3 |
254.7 |
60.0 |
| C1 |
C2 |
C3 |
H3A |
132.2 |
300.0 |
| C3 |
C2 |
C1 |
H2 |
240.0 |
240.0 |
| C3 |
C2 |
C1 |
H2A |
114.7 |
120.0 |
| H1 |
C1 |
C2 |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
C2 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
H1B |
240.0 |
240.0 |
| H2 |
C2 |
C1 |
H2A |
234.7 |
239.9 |
| C1 |
C2 |
C3 |
C4 |
14.6 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
240.0 |
240.0 |
| C2 |
C3 |
C4 |
H3A |
117.6 |
120.0 |
| C4 |
C3 |
C2 |
H2 |
254.6 |
60.0 |
| C4 |
C3 |
C2 |
H2A |
129.4 |
300.0 |
| O6 |
C4 |
C3 |
C5 |
182.5 |
180.0 |
| C3 |
C4 |
C5 |
H5 |
155.8 |
-0.0 |
| C3 |
C4 |
C5 |
H5A |
275.8 |
120.0 |
| C3 |
C4 |
C5 |
H5B |
35.8 |
240.0 |
| H3 |
C3 |
C4 |
H3A |
237.5 |
240.0 |
| C3 |
C2 |
C1 |
H1 |
159.0 |
300.0 |
| C3 |
C2 |
C1 |
H1A |
279.0 |
60.0 |
| C3 |
C2 |
C1 |
H1B |
39.0 |
180.0 |
| C1 |
C2 |
C3 |
H2 |
120.0 |
120.0 |
| C1 |
C2 |
C3 |
H2A |
245.3 |
240.0 |
| C2 |
C3 |
C4 |
O6 |
0.1 |
-0.0 |
| C2 |
C3 |
C4 |
C5 |
177.6 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
120.0 |
120.0 |
| C4 |
C3 |
C2 |
H3A |
242.4 |
240.0 |
| H3 |
C3 |
C2 |
H3A |
122.4 |
119.9 |
| H2 |
C2 |
C3 |
H2A |
125.3 |
120.0 |
| O6 |
C4 |
C3 |
C2 |
0.1 |
-0.0 |
| C3 |
C4 |
O6 |
C5 |
177.5 |
180.0 |
| O6 |
C4 |
C3 |
H3 |
120.1 |
120.0 |
| O6 |
C4 |
C3 |
H3A |
242.6 |
240.0 |
| O6 |
C4 |
C5 |
H5 |
333.3 |
180.0 |
| O6 |
C4 |
C5 |
H5A |
93.3 |
300.0 |
| O6 |
C4 |
C5 |
H5B |
213.3 |
60.0 |
| C5 |
C4 |
C3 |
C2 |
177.6 |
180.0 |
| C3 |
C4 |
C5 |
O6 |
182.5 |
180.0 |
| C5 |
C4 |
C3 |
H3 |
297.6 |
300.0 |
| C5 |
C4 |
C3 |
H3A |
60.0 |
60.0 |
| H5 |
C5 |
C4 |
H5A |
240.0 |
240.0 |
| H5 |
C5 |
C4 |
H5B |
120.0 |
120.0 |
| H5A |
C5 |
C4 |
H5B |
240.0 |
239.9 |
| H1 |
C1 |
C2 |
C3 |
159.0 |
300.0 |
| C2 |
C1 |
H1 |
H1A |
120.0 |
120.0 |
| C2 |
C1 |
H1 |
H1B |
240.0 |
240.0 |
| H1 |
C1 |
C2 |
H2 |
279.0 |
60.0 |
| H1 |
C1 |
C2 |
H2A |
44.3 |
180.1 |
| H1A |
C1 |
H1 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
C3 |
279.0 |
60.0 |
| C2 |
C1 |
H1A |
H1 |
240.0 |
240.0 |
| C2 |
C1 |
H1A |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
H2 |
39.0 |
179.9 |
| H1A |
C1 |
C2 |
H2A |
164.2 |
300.0 |
| H1 |
C1 |
H1A |
H1B |
240.0 |
240.0 |
| H1B |
C1 |
C2 |
C3 |
39.0 |
180.0 |
| C2 |
C1 |
H1B |
H1 |
120.1 |
120.0 |
| C2 |
C1 |
H1B |
H1A |
240.0 |
240.0 |
| H1B |
C1 |
C2 |
H2 |
159.0 |
300.0 |
| H1B |
C1 |
C2 |
H2A |
284.2 |
60.0 |
| H1 |
C1 |
H1B |
H1A |
119.9 |
120.0 |
| C4 |
C3 |
H3 |
C2 |
235.6 |
240.0 |
| H3 |
C3 |
C4 |
O6 |
120.1 |
120.0 |
| H3 |
C3 |
C4 |
C5 |
297.6 |
300.0 |
| C4 |
C3 |
H3 |
H3A |
117.8 |
120.1 |
| C2 |
C3 |
H3 |
H3A |
242.2 |
240.1 |
| H3 |
C3 |
C2 |
H2 |
134.6 |
299.9 |
| H3 |
C3 |
C2 |
H2A |
9.4 |
180.0 |
| C4 |
C3 |
H3A |
C2 |
123.0 |
120.0 |
| H3A |
C3 |
C4 |
O6 |
242.6 |
240.0 |
| H3A |
C3 |
C4 |
C5 |
60.0 |
60.0 |
| C4 |
C3 |
H3A |
H3 |
241.5 |
239.9 |
| C2 |
C3 |
H3A |
H3 |
118.5 |
119.9 |
| H3A |
C3 |
C2 |
H2 |
12.2 |
180.0 |
| H3A |
C3 |
C2 |
H2A |
246.9 |
60.1 |
| C4 |
C5 |
H5 |
H5A |
120.0 |
120.0 |
| C4 |
C5 |
H5 |
H5B |
240.0 |
240.0 |
| H5A |
C5 |
H5 |
H5B |
120.0 |
120.0 |
| C4 |
C5 |
H5A |
H5 |
240.0 |
240.0 |
| C4 |
C5 |
H5A |
H5B |
120.0 |
120.0 |
| H5 |
C5 |
H5A |
H5B |
240.0 |
240.0 |
| C4 |
C5 |
H5B |
H5 |
120.0 |
120.0 |
| C4 |
C5 |
H5B |
H5A |
240.0 |
240.0 |
| H5 |
C5 |
H5B |
H5A |
120.0 |
120.0 |
| C1 |
C2 |
H2 |
C3 |
231.1 |
240.0 |
| H2 |
C2 |
C1 |
H1 |
279.0 |
60.0 |
| H2 |
C2 |
C1 |
H1A |
39.0 |
179.9 |
| H2 |
C2 |
C1 |
H1B |
159.0 |
300.0 |
| C1 |
C2 |
H2 |
H2A |
115.5 |
120.1 |
| H2 |
C2 |
C3 |
H3 |
134.6 |
299.9 |
| H2 |
C2 |
C3 |
H3A |
12.2 |
180.0 |
| C3 |
C2 |
H2 |
H2A |
244.4 |
240.1 |
| C1 |
C2 |
H2A |
C3 |
126.2 |
120.0 |
| H2A |
C2 |
C1 |
H1 |
44.3 |
180.1 |
| H2A |
C2 |
C1 |
H1A |
164.2 |
300.0 |
| H2A |
C2 |
C1 |
H1B |
284.2 |
60.0 |
| C1 |
C2 |
H2A |
H2 |
243.1 |
239.9 |
| H2A |
C2 |
C3 |
H3 |
9.4 |
180.0 |
| H2A |
C2 |
C3 |
H3A |
246.9 |
60.1 |
| C3 |
C2 |
H2A |
H2 |
116.9 |
119.9 |