PDB Chemical Component PN6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PN6
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C17 |
C18 |
1.362 |
1.384 |
| C17 |
C16 |
1.376 |
1.384 |
| C18 |
C19 |
1.377 |
1.378 |
| C16 |
C15 |
1.385 |
1.378 |
| C19 |
C14 |
1.377 |
1.399 |
| C15 |
C14 |
1.359 |
1.400 |
| C14 |
C13 |
1.370 |
1.470 |
| C13 |
C10 |
1.370 |
1.355 |
| N9 |
C10 |
1.357 |
1.397 |
| N9 |
C8 |
1.361 |
1.350 |
| C10 |
C11 |
1.375 |
1.472 |
| O20 |
C8 |
1.207 |
1.217 |
| C8 |
C7 |
1.368 |
1.467 |
| C11 |
O21 |
1.219 |
1.216 |
| C11 |
N12 |
1.359 |
1.350 |
| C7 |
N12 |
1.340 |
1.401 |
| C7 |
C6 |
1.362 |
1.357 |
| C6 |
C2 |
1.322 |
1.467 |
| C2 |
N3 |
1.286 |
1.357 |
| C2 |
C1 |
1.308 |
1.367 |
| N3 |
C4 |
1.301 |
1.303 |
| C25 |
C22 |
1.497 |
1.529 |
| C1 |
C22 |
1.512 |
1.508 |
| C1 |
N5 |
1.299 |
1.362 |
| C24 |
C22 |
1.483 |
1.530 |
| C22 |
C23 |
1.490 |
1.530 |
| C4 |
N5 |
1.300 |
1.358 |
| C6 |
H1 |
1.080 |
1.080 |
| C4 |
H2 |
1.080 |
1.079 |
| C23 |
H3 |
1.100 |
1.090 |
| C23 |
H4 |
1.100 |
1.090 |
| C23 |
H5 |
1.100 |
1.091 |
| C24 |
H6 |
1.100 |
1.091 |
| C24 |
H7 |
1.100 |
1.091 |
| C24 |
H8 |
1.099 |
1.090 |
| C25 |
H9 |
1.100 |
1.091 |
| C25 |
H10 |
1.100 |
1.090 |
| C25 |
H11 |
1.100 |
1.091 |
| N5 |
H12 |
1.000 |
0.971 |
| N12 |
H14 |
1.000 |
0.970 |
| C13 |
H15 |
1.080 |
1.080 |
| C15 |
H17 |
1.080 |
1.080 |
| C16 |
H18 |
1.080 |
1.081 |
| C17 |
H19 |
1.080 |
1.081 |
| C18 |
H20 |
1.080 |
1.081 |
| C19 |
H21 |
1.080 |
1.080 |
| N9 |
H13 |
1.000 |
0.971 |
Bond Angles for PN6
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C17 |
C18 |
C19 |
118.6 |
120.2 |
| C18 |
C17 |
H19 |
120.3 |
119.8 |
| C17 |
C18 |
H20 |
120.7 |
119.9 |
| C17 |
C16 |
H18 |
119.0 |
119.9 |
| C19 |
C18 |
H20 |
120.7 |
119.9 |
| C18 |
C19 |
H21 |
119.0 |
120.1 |
| C16 |
C15 |
H17 |
120.8 |
120.1 |
| C14 |
C13 |
H15 |
119.6 |
120.0 |
| N9 |
C10 |
C11 |
119.7 |
119.5 |
| C10 |
N9 |
H13 |
120.2 |
120.3 |
| C8 |
C7 |
N12 |
119.4 |
119.5 |
| C11 |
N12 |
H14 |
119.5 |
120.3 |
| C7 |
N12 |
H14 |
119.5 |
120.3 |
| C7 |
C6 |
H1 |
122.4 |
120.0 |
| C6 |
C2 |
N3 |
123.8 |
126.3 |
| C6 |
C2 |
C1 |
128.9 |
126.3 |
| C2 |
C6 |
H1 |
122.4 |
120.0 |
| C1 |
C2 |
N3 |
107.4 |
107.5 |
| C2 |
N3 |
C4 |
107.7 |
109.1 |
| C2 |
C1 |
C22 |
126.3 |
126.6 |
| C2 |
C1 |
N5 |
109.5 |
106.7 |
| N3 |
C4 |
H2 |
125.2 |
125.4 |
| C4 |
N5 |
C1 |
105.7 |
107.6 |
| C1 |
N5 |
H12 |
127.1 |
126.2 |
| C22 |
C23 |
H3 |
109.5 |
109.5 |
| C22 |
C23 |
H4 |
109.5 |
109.5 |
| C22 |
C23 |
H5 |
109.4 |
109.4 |
| N5 |
C4 |
H2 |
125.2 |
125.5 |
| C4 |
N5 |
H12 |
127.1 |
126.1 |
| H3 |
C23 |
H4 |
109.5 |
109.5 |
| H3 |
C23 |
H5 |
109.5 |
109.4 |
| H4 |
C23 |
H5 |
109.5 |
109.5 |
| H6 |
C24 |
H7 |
109.5 |
109.5 |
| H6 |
C24 |
H8 |
109.5 |
109.4 |
| H7 |
C24 |
H8 |
109.5 |
109.5 |
| H9 |
C25 |
H10 |
109.5 |
109.5 |
| H9 |
C25 |
H11 |
109.5 |
109.4 |
| H10 |
C25 |
H11 |
109.4 |
109.5 |
Torsion Angles for PN6
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C18 |
C17 |
C16 |
H18 |
180.2 |
180.0 |
| C19 |
C18 |
C17 |
H20 |
180.0 |
179.7 |
| C17 |
C18 |
C19 |
H21 |
180.3 |
180.0 |
| C17 |
C16 |
C15 |
H17 |
179.1 |
180.0 |
| C19 |
C18 |
C17 |
H19 |
180.2 |
180.0 |
| C17 |
C18 |
C19 |
H20 |
180.0 |
180.3 |
| C19 |
C14 |
C13 |
H15 |
28.2 |
27.6 |
| C15 |
C14 |
C13 |
H15 |
210.7 |
208.0 |
| C13 |
C10 |
N9 |
H13 |
358.7 |
14.1 |
| N9 |
C8 |
C7 |
N12 |
359.3 |
345.5 |
| C11 |
C10 |
N9 |
H13 |
180.6 |
194.4 |
| C10 |
C11 |
N12 |
H14 |
180.3 |
180.4 |
| O20 |
C8 |
C7 |
N12 |
179.3 |
165.6 |
| C8 |
C7 |
N12 |
H14 |
180.4 |
193.9 |
| C8 |
C7 |
C6 |
H1 |
9.4 |
7.3 |
| N9 |
C10 |
C11 |
O21 |
179.8 |
165.6 |
| O21 |
C11 |
N12 |
H14 |
359.7 |
359.9 |
| N9 |
C10 |
C11 |
N12 |
359.3 |
345.1 |
| C7 |
N12 |
C11 |
H14 |
180.0 |
179.9 |
| C11 |
N12 |
C7 |
H14 |
180.0 |
180.1 |
| N12 |
C7 |
C6 |
H1 |
189.1 |
187.1 |
| C2 |
C6 |
C7 |
H1 |
180.0 |
179.8 |
| C7 |
C6 |
C2 |
H1 |
180.0 |
180.2 |
| C1 |
C2 |
C6 |
N3 |
180.9 |
180.4 |
| C6 |
C2 |
N3 |
C4 |
180.7 |
179.9 |
| C6 |
C2 |
C1 |
C22 |
359.0 |
360.0 |
| C6 |
C2 |
C1 |
N5 |
179.7 |
179.9 |
| C6 |
C2 |
N3 |
C1 |
180.8 |
180.3 |
| N3 |
C2 |
C6 |
H1 |
160.4 |
175.2 |
| N3 |
C2 |
C1 |
C22 |
179.8 |
180.3 |
| N3 |
C2 |
C1 |
N5 |
0.5 |
0.2 |
| C2 |
N3 |
C4 |
H2 |
179.6 |
180.2 |
| C6 |
C2 |
C1 |
N3 |
179.2 |
179.7 |
| C1 |
C2 |
C6 |
H1 |
341.3 |
355.6 |
| C1 |
C2 |
N3 |
C4 |
359.9 |
359.6 |
| C4 |
N5 |
C1 |
C2 |
359.3 |
360.0 |
| C2 |
C1 |
N5 |
H12 |
179.2 |
179.7 |
| N5 |
C4 |
N3 |
H2 |
180.0 |
180.1 |
| N3 |
C4 |
N5 |
H12 |
180.7 |
180.0 |
| C2 |
C1 |
C22 |
C25 |
305.1 |
300.0 |
| C25 |
C22 |
C23 |
H3 |
180.0 |
180.0 |
| C25 |
C22 |
C23 |
H4 |
300.0 |
300.0 |
| C25 |
C22 |
C23 |
H5 |
60.0 |
60.0 |
| C22 |
C1 |
C2 |
N3 |
179.8 |
180.3 |
| C2 |
C1 |
C22 |
N5 |
180.8 |
180.0 |
| C4 |
N5 |
C1 |
C22 |
179.9 |
179.9 |
| C1 |
C22 |
C23 |
H3 |
300.4 |
300.0 |
| C1 |
C22 |
C23 |
H4 |
60.4 |
60.0 |
| C1 |
C22 |
C23 |
H5 |
180.4 |
180.0 |
| N5 |
C1 |
C2 |
N3 |
0.5 |
0.2 |
| C2 |
C1 |
N5 |
C22 |
179.3 |
180.0 |
| C1 |
N5 |
C4 |
H2 |
180.7 |
179.9 |
| C4 |
N5 |
C1 |
H12 |
180.0 |
180.2 |
| C2 |
C1 |
C22 |
C24 |
66.9 |
60.0 |
| C24 |
C22 |
C23 |
H3 |
62.5 |
59.9 |
| C24 |
C22 |
C23 |
H4 |
182.5 |
180.0 |
| C24 |
C22 |
C23 |
H5 |
302.5 |
300.0 |
| C2 |
C1 |
C22 |
C23 |
185.0 |
180.0 |
| H3 |
C23 |
C22 |
H4 |
240.0 |
240.0 |
| H3 |
C23 |
C22 |
H5 |
120.0 |
120.0 |
| H4 |
C23 |
C22 |
H5 |
240.0 |
240.0 |
| C2 |
N3 |
C4 |
N5 |
359.6 |
0.4 |
| C2 |
C1 |
N5 |
C4 |
359.3 |
360.0 |
| N3 |
C4 |
N5 |
H2 |
180.0 |
179.9 |
| C1 |
N5 |
C4 |
H12 |
180.0 |
179.8 |
| H1 |
C6 |
C2 |
N3 |
160.4 |
175.2 |
| H1 |
C6 |
C2 |
C1 |
341.3 |
355.6 |
| H2 |
C4 |
N5 |
C1 |
180.7 |
179.9 |
| H2 |
C4 |
N5 |
H12 |
0.7 |
0.2 |
| C22 |
C23 |
H3 |
H4 |
120.0 |
120.1 |
| C22 |
C23 |
H3 |
H5 |
240.0 |
240.1 |
| H4 |
C23 |
H3 |
H5 |
120.0 |
120.0 |
| C22 |
C23 |
H4 |
H3 |
239.9 |
240.0 |
| C22 |
C23 |
H4 |
H5 |
120.0 |
120.0 |
| H3 |
C23 |
H4 |
H5 |
240.0 |
240.0 |
| C22 |
C23 |
H5 |
H3 |
120.0 |
120.0 |
| C22 |
C23 |
H5 |
H4 |
240.0 |
240.0 |
| H3 |
C23 |
H5 |
H4 |
120.0 |
120.0 |
| H7 |
C24 |
H6 |
H8 |
120.0 |
120.0 |
| H6 |
C24 |
H7 |
H8 |
240.0 |
240.0 |
| H6 |
C24 |
H8 |
H7 |
120.0 |
120.0 |
| H10 |
C25 |
H9 |
H11 |
119.9 |
120.0 |
| H9 |
C25 |
H10 |
H11 |
240.0 |
240.0 |
| H9 |
C25 |
H11 |
H10 |
120.0 |
120.0 |
| C4 |
N5 |
H12 |
C1 |
180.0 |
179.7 |
| H12 |
N5 |
C4 |
H2 |
0.7 |
0.2 |
| H18 |
C16 |
C15 |
H17 |
359.0 |
0.1 |
| H19 |
C17 |
C18 |
C19 |
180.2 |
180.0 |
| H19 |
C17 |
C18 |
H20 |
0.2 |
0.3 |
| H19 |
C17 |
C16 |
H18 |
0.2 |
359.7 |
| C17 |
C18 |
H20 |
C19 |
180.0 |
179.7 |
| H20 |
C18 |
C17 |
H19 |
0.2 |
0.3 |
| H20 |
C18 |
C19 |
H21 |
0.3 |
359.7 |
| H21 |
C19 |
C18 |
H20 |
0.3 |
359.7 |
| H13 |
N9 |
C10 |
C11 |
180.6 |
194.4 |