PDB Chemical Component PN2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PN2

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CA N 1.459 1.380
CA C 1.540 1.306
CA CB 1.528 1.507
N HN1 1.020 0.970
N HN2 1.020 0.969
C O 1.221 1.208
CB O5 1.439 1.428
CB HCB1 1.115 1.090
CB HCB2 1.115 1.090
O5 P6 1.618 1.609
P6 O7 1.562 1.611
P6 O8 1.616 1.480
P6 O9 1.530 1.609
O7 HOP6 0.950 0.967
O9 C12 1.441 1.429
C11 C12 1.606 1.530
C11 C13 1.582 1.529
C11 C14 1.522 1.531
C11 C10 1.688 1.530
C12 H121 1.115 1.089
C12 H122 1.114 1.090
C13 H131 1.115 1.089
C13 H132 1.116 1.089
C13 H133 1.115 1.091
C14 H141 1.115 1.090
C14 H142 1.115 1.090
C14 H143 1.115 1.089
C10 O10 1.487 1.428
C10 C9 1.598 1.505
C10 H10 1.115 1.089
O10 H10O 0.950 0.967
C9 O39 1.341 1.213
C9 N8 1.341 1.347
N8 C7 1.509 1.464
N8 HN8 1.020 0.970
C7 C42 1.566 1.529
C7 H71 1.115 1.090
C7 H72 1.115 1.090
C42 C43 1.540 1.507
C42 H421 1.115 1.090
C42 H422 1.115 1.090
C43 O44 1.321 1.213
C43 N4 1.325 1.347
N4 C3 1.535 1.464
N4 HN4 1.020 0.970
C3 C47 1.506 1.529
C3 H31 1.115 1.091
C3 H2 1.114 1.090
C47 S1 1.869 1.815
C47 H471 1.115 1.090
C47 H472 1.115 1.090
S1 HS 0.951 1.345

Bond Angles for PN2

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N CA C 112.3 120.0
N CA CB 112.4 120.0
CA N HN1 112.3 119.9
CA N HN2 111.1 120.1
C CA CB 113.2 120.0
CA C O 119.9 180.0
CA CB O5 109.6 109.5
CA CB HCB1 112.2 109.5
CA CB HCB2 112.2 109.5
HN1 N HN2 111.2 120.0
O5 CB HCB1 112.1 109.4
O5 CB HCB2 112.1 109.4
CB O5 P6 118.4 106.9
HCB1 CB HCB2 98.3 109.5
O5 P6 O7 108.3 109.4
O5 P6 O8 107.1 109.5
O5 P6 O9 110.0 109.5
O7 P6 O8 107.6 109.4
O7 P6 O9 107.8 109.5
P6 O7 HOP6 108.4 106.8
O8 P6 O9 115.8 109.5
P6 O9 C12 126.7 106.8
O9 C12 C11 112.1 109.5
O9 C12 H121 111.2 109.5
O9 C12 H122 111.3 109.4
C12 C11 C13 109.7 109.5
C12 C11 C14 103.6 109.4
C12 C11 C10 110.9 109.5
C11 C12 H121 111.2 109.4
C11 C12 H122 111.3 109.5
C13 C11 C14 111.7 109.5
C13 C11 C10 107.1 109.5
C11 C13 H131 109.7 109.5
C11 C13 H132 112.2 109.5
C11 C13 H133 112.2 109.4
C14 C11 C10 113.9 109.5
C11 C14 H141 103.6 109.5
C11 C14 H142 114.4 109.5
C11 C14 H143 114.4 109.5
C11 C10 O10 111.8 109.5
C11 C10 C9 114.9 109.4
C11 C10 H10 102.9 109.4
H121 C12 H122 99.1 109.5
H131 C13 H132 112.1 109.5
H131 C13 H133 112.1 109.4
H132 C13 H133 98.2 109.5
H141 C14 H142 114.4 109.5
H141 C14 H143 114.5 109.5
H142 C14 H143 96.1 109.5
O10 C10 C9 106.1 109.5
O10 C10 H10 112.2 109.4
C10 O10 H10O 111.8 106.8
C9 C10 H10 109.0 109.5
C10 C9 O39 118.7 120.0
C10 C9 N8 118.6 120.1
O39 C9 N8 122.7 119.9
C9 N8 C7 128.1 120.1
C9 N8 HN8 109.0 119.9
C7 N8 HN8 122.9 120.0
N8 C7 C42 114.0 109.5
N8 C7 H71 110.5 109.4
N8 C7 H72 110.5 109.5
C42 C7 H71 110.6 109.5
C42 C7 H72 110.6 109.5
C7 C42 C43 113.5 109.5
C7 C42 H421 110.7 109.5
C7 C42 H422 110.7 109.5
H71 C7 H72 99.7 109.5
C43 C42 H421 110.7 109.5
C43 C42 H422 110.7 109.5
C42 C43 O44 123.5 120.0
C42 C43 N4 113.1 120.0
H421 C42 H422 99.6 109.5
O44 C43 N4 123.3 119.9
C43 N4 C3 123.5 120.1
C43 N4 HN4 110.5 120.0
C3 N4 HN4 126.0 120.0
N4 C3 C47 109.7 109.5
N4 C3 H31 112.1 109.5
N4 C3 H2 112.1 109.5
C47 C3 H31 112.1 109.4
C47 C3 H2 112.1 109.5
C3 C47 S1 112.8 109.5
C3 C47 H471 111.0 109.4
C3 C47 H472 111.0 109.5
H31 C3 H2 98.4 109.5
S1 C47 H471 111.0 109.4
S1 C47 H472 111.0 109.4
C47 S1 HS 112.8 100.0
H471 C47 H472 99.3 109.5

Torsion Angles for PN2

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C CA N CB 129.1 180.0
N CA C O 134.1 173.5
N CA CB O5 181.0 180.0
N CA CB HCB1 306.2 60.0
N CA CB HCB2 55.8 300.0
HN1 N CA HN2 125.2 180.1
N CA C CB 231.4 180.0
C CA N HN1 180.0 0.0
C CA N HN2 54.7 180.0
C CA CB O5 52.4 360.0
C CA CB HCB1 177.6 240.0
C CA CB HCB2 287.2 120.0
N CA CB C 128.6 180.0
CB CA N HN1 50.9 180.0
CB CA N HN2 285.7 359.9
CB CA C O 262.7 353.6
O5 CB CA HCB1 234.7 120.0
O5 CB CA HCB2 125.2 240.0
CA CB O5 P6 119.2 180.0
HCB1 CB CA HCB2 250.5 120.0
HN1 N CA C 180.0 0.0
HN1 N CA CB 50.9 180.0
CA N HN1 HN2 234.8 179.9
HN2 N CA C 54.7 180.0
HN2 N CA CB 285.7 359.9
CA N HN2 HN1 125.9 180.1
O C CA CB 262.7 353.6
CA CB O5 HCB1 125.3 240.0
CA CB O5 HCB2 234.7 120.0
HCB1 CB O5 HCB2 109.5 240.0
CB O5 P6 O7 102.0 60.0
CB O5 P6 O8 346.1 300.1
CB O5 P6 O9 219.6 180.0
CA CB HCB1 O5 236.1 120.0
CA CB HCB1 HCB2 118.1 240.0
O5 CB HCB1 HCB2 242.0 120.0
HCB1 CB O5 P6 353.9 300.0
CA CB HCB2 O5 123.8 240.0
CA CB HCB2 HCB1 241.9 120.0
O5 CB HCB2 HCB1 118.0 240.0
HCB2 CB O5 P6 244.4 60.0
P6 O5 CB HCB1 353.9 300.0
P6 O5 CB HCB2 244.4 60.0
O7 P6 O5 O8 115.8 119.9
O7 P6 O5 O9 242.4 240.0
O5 P6 O7 HOP6 180.0 60.1
O8 P6 O5 O9 126.6 120.1
O5 P6 O9 C12 33.0 180.0
O5 P6 O7 O8 244.5 240.0
O5 P6 O7 O9 119.0 120.0
O8 P6 O7 O9 234.4 240.0
O7 P6 O9 C12 150.9 300.0
O5 P6 O8 O7 116.3 119.9
O5 P6 O8 O9 237.0 239.9
O7 P6 O8 O9 120.7 120.0
O8 P6 O7 HOP6 295.5 180.0
O8 P6 O9 C12 271.5 60.0
O5 P6 O9 O7 242.1 240.0
O5 P6 O9 O8 121.5 120.1
O7 P6 O9 O8 239.4 240.0
O9 P6 O7 HOP6 61.0 300.1
P6 O9 C12 C11 172.3 180.0
P6 O9 C12 H121 297.5 60.0
P6 O9 C12 H122 47.1 300.0
HOP6 O7 P6 O8 295.5 180.0
HOP6 O7 P6 O9 61.0 300.1
O9 C12 C11 C13 67.9 300.0
O9 C12 C11 C14 187.3 60.0
O9 C12 C11 C10 309.8 180.0
C11 C12 O9 H121 234.8 120.0
C11 C12 O9 H122 125.3 240.0
H121 C12 O9 H122 250.5 120.1
O9 C12 C11 H121 125.2 240.0
O9 C12 C11 H122 234.7 120.0
C13 C11 C12 C14 240.6 240.0
C13 C11 C12 C10 118.0 120.1
C12 C11 C13 H131 180.0 307.0
C12 C11 C13 H132 305.3 67.0
C12 C11 C13 H133 54.7 187.0
C14 C11 C12 C10 237.4 240.0
C12 C11 C14 H141 180.1 63.8
C12 C11 C14 H142 305.2 183.8
C12 C11 C14 H143 54.7 303.8
C12 C11 C10 O10 157.3 294.1
C12 C11 C10 C9 278.2 54.2
C12 C11 C10 H10 36.6 174.2
H121 C12 C11 H122 109.5 239.9
C12 C11 C13 C14 114.2 120.0
C12 C11 C13 C10 239.6 240.0
C13 C11 C12 H121 302.7 60.0
C13 C11 C12 H122 193.2 180.1
C14 C11 C13 C10 125.4 120.0
C13 C11 C14 H141 298.0 183.8
C13 C11 C14 H142 63.2 303.8
C13 C11 C14 H143 172.7 63.8
C13 C11 C10 O10 37.7 174.1
C13 C11 C10 C9 158.6 294.1
C13 C11 C10 H10 277.0 54.2
H131 C13 C11 H132 234.7 240.0
H131 C13 C11 H133 125.2 119.9
H132 C13 C11 H133 250.5 240.0
C12 C11 C14 C13 242.0 240.0
C12 C11 C14 C10 120.5 120.0
C14 C11 C12 H121 62.1 180.0
C14 C11 C12 H122 312.6 300.0
C13 C11 C14 C10 238.5 239.9
C14 C11 C13 H131 65.7 187.0
C14 C11 C13 H132 191.0 307.0
C14 C11 C13 H133 300.5 67.0
C14 C11 C10 O10 273.6 54.0
C14 C11 C10 C9 34.5 174.1
C14 C11 C10 H10 152.9 294.1
H141 C14 C11 H142 234.8 240.0
H141 C14 C11 H143 125.3 120.0
H142 C14 C11 H143 250.5 240.0
C12 C11 C10 C13 119.6 120.0
C12 C11 C10 C14 243.7 240.0
C10 C11 C12 H121 184.6 300.0
C10 C11 C12 H122 75.1 60.0
C13 C11 C10 C14 124.1 120.0
C10 C11 C13 H131 300.4 67.0
C10 C11 C13 H132 65.7 187.0
C10 C11 C13 H133 175.1 307.0
C10 C11 C14 H141 59.5 303.8
C10 C11 C14 H142 184.7 63.8
C10 C11 C14 H143 294.2 183.8
O10 C10 C11 C9 239.1 239.9
O10 C10 C11 H10 120.7 119.9
C11 C10 O10 H10O 180.0 60.0
C9 C10 C11 H10 241.6 240.0
C11 C10 C9 O39 251.4 250.8
C11 C10 C9 N8 69.7 70.8
O9 C12 H121 C11 234.3 120.0
O9 C12 H121 H122 117.2 240.0
H121 C12 C11 C13 302.7 60.0
H121 C12 C11 C14 62.1 180.0
H121 C12 C11 C10 184.6 300.0
C11 C12 H121 H122 242.8 120.0
O9 C12 H122 C11 125.7 240.0
O9 C12 H122 H121 242.9 120.0
H122 C12 C11 C13 193.2 180.1
H122 C12 C11 C14 312.6 300.0
H122 C12 C11 C10 75.1 60.0
C11 C12 H122 H121 117.1 240.0
H131 C13 C11 C14 65.7 187.0
H131 C13 C11 C10 300.4 67.0
C11 C13 H131 H132 125.3 120.0
C11 C13 H131 H133 234.7 240.1
H132 C13 H131 H133 109.3 120.0
H132 C13 C11 C14 191.0 307.0
H132 C13 C11 C10 65.7 187.0
C11 C13 H132 H131 236.0 240.0
C11 C13 H132 H133 118.1 120.0
H131 C13 H132 H133 242.1 240.0
H133 C13 C11 C14 300.5 67.0
H133 C13 C11 C10 175.1 307.0
C11 C13 H133 H131 123.9 120.0
C11 C13 H133 H132 241.9 240.0
H131 C13 H133 H132 118.0 120.0
H141 C14 C11 C10 59.5 303.8
C11 C14 H141 H142 125.2 120.0
C11 C14 H141 H143 234.7 240.0
H142 C14 H141 H143 109.5 120.0
H142 C14 C11 C10 184.7 63.8
C11 C14 H142 H141 240.7 240.0
C11 C14 H142 H143 120.3 120.0
H141 C14 H142 H143 239.6 240.0
H143 C14 C11 C10 294.2 183.8
C11 C14 H143 H141 119.3 120.0
C11 C14 H143 H142 239.7 240.0
H141 C14 H143 H142 120.3 120.0
C11 C10 O10 C9 125.9 120.0
C11 C10 O10 H10 244.9 240.1
C9 C10 O10 H10 119.0 120.1
O10 C10 C9 O39 15.4 10.9
O10 C10 C9 N8 193.7 190.9
C11 C10 C9 O10 236.0 240.0
C11 C10 C9 H10 114.9 119.9
O10 C10 C9 H10 238.9 240.0
C9 C10 O10 H10O 54.1 300.0
O39 C9 C10 N8 181.7 180.0
C10 C9 N8 C7 150.8 176.3
C10 C9 N8 HN8 330.8 356.3
C11 C10 H10 O10 120.4 119.9
C11 C10 H10 C9 237.6 240.0
O10 C10 H10 C9 117.2 120.1
H10 C10 O10 H10O 295.1 179.9
H10 C10 C9 O39 136.5 130.9
H10 C10 C9 N8 314.8 310.9
H10O O10 C10 C9 54.1 300.0
H10O O10 C10 H10 295.1 179.9
O39 C9 C10 H10 136.5 130.9
C10 C9 O39 N8 178.3 180.0
O39 C9 N8 C7 329.1 356.3
O39 C9 N8 HN8 149.1 176.3
N8 C9 C10 H10 314.8 310.9
C10 C9 N8 O39 181.7 180.0
C7 N8 C9 HN8 180.0 180.0
C9 N8 C7 C42 39.5 180.0
C9 N8 C7 H71 164.8 300.0
C9 N8 C7 H72 274.2 60.0
C9 N8 C7 HN8 180.0 180.0
C42 C7 N8 H71 234.7 240.0
C42 C7 N8 H72 125.3 120.0
N8 C7 C42 C43 84.9 180.0
N8 C7 C42 H421 210.2 300.0
N8 C7 C42 H422 319.7 60.0
H71 C7 N8 H72 250.6 240.0
C9 N8 HN8 C7 180.0 180.0
HN8 N8 C7 C42 219.5 360.0
HN8 N8 C7 H71 344.8 120.0
HN8 N8 C7 H72 94.2 240.0
C42 C7 N8 HN8 219.5 360.0
N8 C7 C42 H71 125.2 120.0
N8 C7 C42 H72 234.7 240.0
H71 C7 C42 H72 109.5 120.0
C43 C42 C7 H421 234.7 240.0
C43 C42 C7 H422 125.3 120.0
C7 C42 C43 O44 69.0 360.0
C7 C42 C43 N4 248.6 180.0
H421 C42 C7 H422 250.5 240.0
H71 C7 N8 HN8 344.8 120.0
N8 C7 H71 C42 232.8 239.9
N8 C7 H71 H72 116.4 120.0
C42 C7 H71 H72 243.6 240.0
H71 C7 C42 C43 319.7 60.0
H71 C7 C42 H421 85.0 180.0
H71 C7 C42 H422 194.4 300.0
H72 C7 N8 HN8 94.2 240.0
N8 C7 H72 C42 127.2 120.1
N8 C7 H72 H71 243.7 240.0
C42 C7 H72 H71 116.4 120.0
H72 C7 C42 C43 210.2 300.0
H72 C7 C42 H421 335.5 60.0
H72 C7 C42 H422 84.9 180.0
C43 C42 C7 H71 319.7 60.0
C43 C42 C7 H72 210.2 300.0
C7 C42 C43 H421 125.3 120.0
C7 C42 C43 H422 234.7 240.0
H421 C42 C43 H422 109.5 120.0
O44 C43 C42 N4 180.3 180.0
C42 C43 N4 C3 172.2 180.0
C42 C43 N4 HN4 352.2 360.0
H421 C42 C7 H71 85.0 180.0
H421 C42 C7 H72 335.5 60.0
C7 C42 H421 C43 233.1 240.0
C7 C42 H421 H422 116.6 120.0
C43 C42 H421 H422 243.4 240.0
H421 C42 C43 O44 303.7 240.0
H421 C42 C43 N4 123.4 60.0
H422 C42 C7 H71 194.4 300.0
H422 C42 C7 H72 84.9 180.0
C7 C42 H422 C43 126.8 120.0
C7 C42 H422 H421 243.4 240.0
C43 C42 H422 H421 116.6 120.0
H422 C42 C43 O44 194.2 120.0
H422 C42 C43 N4 13.9 300.0
O44 C43 C42 H421 303.7 240.0
O44 C43 C42 H422 194.2 120.0
C42 C43 O44 N4 179.6 180.0
O44 C43 N4 C3 351.9 0.0
O44 C43 N4 HN4 171.9 180.0
N4 C43 C42 H421 123.4 60.0
N4 C43 C42 H422 13.9 300.0
C42 C43 N4 O44 180.3 180.0
C3 N4 C43 HN4 180.0 180.0
C43 N4 C3 C47 183.5 180.0
C43 N4 C3 H31 308.7 299.9
C43 N4 C3 H2 58.3 59.9
C43 N4 C3 HN4 180.0 180.0
C47 C3 N4 H31 234.8 240.0
C47 C3 N4 H2 125.3 120.0
N4 C3 C47 S1 178.8 180.0
N4 C3 C47 H471 304.0 300.0
N4 C3 C47 H472 53.5 60.0
H31 C3 N4 H2 250.5 240.0
C43 N4 HN4 C3 180.0 180.0
HN4 N4 C3 C47 3.5 360.0
HN4 N4 C3 H31 128.7 120.0
HN4 N4 C3 H2 238.3 240.0
C47 C3 N4 HN4 3.5 360.0
N4 C3 C47 H31 125.2 120.0
N4 C3 C47 H2 234.7 240.0
H31 C3 C47 H2 109.5 120.0
S1 C47 C3 H471 234.7 240.0
S1 C47 C3 H472 125.3 120.0
C3 C47 S1 HS 180.0 180.0
H471 C47 C3 H472 250.6 239.9
H31 C3 N4 HN4 128.7 120.0
N4 C3 H31 C47 236.1 240.0
N4 C3 H31 H2 118.0 120.0
C47 C3 H31 H2 241.9 240.0
H31 C3 C47 S1 53.5 60.0
H31 C3 C47 H471 178.8 180.0
H31 C3 C47 H472 288.3 300.0
H2 C3 N4 HN4 238.3 240.0
N4 C3 H2 C47 123.9 120.1
N4 C3 H2 H31 242.0 240.0
C47 C3 H2 H31 118.0 119.9
H2 C3 C47 S1 304.0 300.0
H2 C3 C47 H471 69.3 60.0
H2 C3 C47 H472 178.7 180.0
S1 C47 C3 H31 53.5 60.0
S1 C47 C3 H2 304.0 300.0
C3 C47 S1 H471 125.3 120.0
C3 C47 S1 H472 234.7 240.0
H471 C47 S1 H472 109.4 120.0
H471 C47 C3 H31 178.8 180.0
H471 C47 C3 H2 69.3 60.0
C3 C47 H471 S1 233.7 240.0
C3 C47 H471 H472 116.9 120.0
S1 C47 H471 H472 243.2 240.0
H471 C47 S1 HS 54.7 60.0
H472 C47 C3 H31 288.3 300.0
H472 C47 C3 H2 178.7 180.0
C3 C47 H472 S1 126.3 120.0
C3 C47 H472 H471 243.1 240.0
S1 C47 H472 H471 116.8 120.0
H472 C47 S1 HS 305.3 300.0
HS S1 C47 H471 54.7 60.0
HS S1 C47 H472 305.3 300.0