PDB Chemical Component PMS
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PMS
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
C1 |
1.529 |
1.508 |
| C |
S |
1.806 |
1.815 |
| C |
H2A |
1.100 |
1.090 |
| C |
H1 |
1.100 |
1.089 |
| O2S |
S |
1.483 |
1.421 |
| S |
O1S |
1.489 |
1.421 |
| S |
O3S |
1.438 |
1.522 |
| C6 |
C1 |
1.465 |
1.381 |
| C1 |
C2 |
1.457 |
1.382 |
| C2 |
C3 |
1.468 |
1.382 |
| C2 |
H2 |
1.081 |
1.080 |
| C4 |
C3 |
1.464 |
1.383 |
| C3 |
H3 |
1.080 |
1.079 |
| C5 |
C4 |
1.464 |
1.383 |
| C4 |
H4 |
1.080 |
1.080 |
| C6 |
C5 |
1.461 |
1.382 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
H6 |
1.080 |
1.080 |
| O3S |
HO3S |
0.950 |
0.967 |
Bond Angles for PMS
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S |
C |
C1 |
155.9 |
109.5 |
| C1 |
C |
H2A |
96.1 |
109.5 |
| C1 |
C |
H1 |
96.1 |
109.5 |
| C |
C1 |
C2 |
120.2 |
120.0 |
| S |
C |
H2A |
96.1 |
109.5 |
| S |
C |
H1 |
96.1 |
109.5 |
| C |
S |
O1S |
110.1 |
110.5 |
| C |
S |
O3S |
119.7 |
104.4 |
| H2A |
C |
H1 |
118.9 |
109.5 |
| O2S |
S |
O1S |
103.2 |
121.1 |
| O3S |
S |
O1S |
110.6 |
104.3 |
| S |
O3S |
HO3S |
109.5 |
114.0 |
| C1 |
C2 |
C3 |
120.2 |
120.0 |
| C1 |
C2 |
H2 |
119.9 |
120.1 |
| C3 |
C2 |
H2 |
119.9 |
120.0 |
| C2 |
C3 |
H3 |
119.8 |
120.0 |
| C4 |
C3 |
H3 |
119.8 |
120.0 |
| C5 |
C4 |
H4 |
120.4 |
120.0 |
| C6 |
C5 |
H5 |
120.0 |
120.0 |
Torsion Angles for PMS
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S |
C |
C1 |
H2A |
240.0 |
120.0 |
| S |
C |
C1 |
H1 |
120.0 |
240.0 |
| C1 |
C |
S |
O1S |
70.5 |
68.4 |
| C1 |
C |
S |
O3S |
300.7 |
180.0 |
| H2A |
C |
C1 |
H1 |
240.0 |
120.0 |
| C |
C1 |
C2 |
C3 |
179.9 |
180.0 |
| C |
C1 |
C2 |
H2 |
359.9 |
360.0 |
| C1 |
C |
S |
H2A |
120.0 |
240.0 |
| C1 |
C |
S |
H1 |
240.0 |
120.0 |
| S |
C |
C1 |
C2 |
69.6 |
90.0 |
| H2A |
C |
S |
H1 |
120.0 |
240.0 |
| O2S |
S |
C |
O1S |
109.5 |
223.2 |
| O3S |
S |
C |
O1S |
230.2 |
111.6 |
| C |
S |
O3S |
HO3S |
242.2 |
180.0 |
| S |
C |
H2A |
C1 |
159.2 |
240.0 |
| C1 |
C |
H2A |
H1 |
100.4 |
240.0 |
| H2A |
C |
C1 |
C2 |
189.6 |
330.0 |
| S |
C |
H2A |
H1 |
259.6 |
120.0 |
| H2A |
C |
S |
O1S |
310.5 |
188.4 |
| H2A |
C |
S |
O3S |
180.7 |
300.0 |
| S |
C |
H1 |
C1 |
200.8 |
120.0 |
| C1 |
C |
H1 |
H2A |
259.6 |
120.0 |
| H1 |
C |
C1 |
C2 |
309.6 |
210.0 |
| S |
C |
H1 |
H2A |
100.4 |
240.0 |
| H1 |
C |
S |
O1S |
190.5 |
308.4 |
| H1 |
C |
S |
O3S |
60.7 |
60.0 |
| O2S |
S |
C |
H2A |
60.0 |
51.6 |
| O2S |
S |
C |
H1 |
300.0 |
171.6 |
| C |
S |
O2S |
O1S |
245.4 |
131.5 |
| O3S |
S |
O2S |
O1S |
117.4 |
243.2 |
| O2S |
S |
O3S |
HO3S |
360.0 |
63.9 |
| O1S |
S |
C |
C1 |
70.5 |
68.4 |
| O1S |
S |
C |
H2A |
310.5 |
188.4 |
| O1S |
S |
C |
H1 |
190.5 |
308.4 |
| C |
S |
O1S |
O3S |
225.5 |
111.7 |
| O1S |
S |
O3S |
HO3S |
112.6 |
296.0 |
| O3S |
S |
C |
C1 |
300.7 |
180.0 |
| O3S |
S |
C |
H2A |
180.7 |
300.0 |
| O3S |
S |
C |
H1 |
60.7 |
60.0 |
| C |
S |
O3S |
O1S |
129.6 |
244.0 |
| O2S |
S |
O3S |
O1S |
247.4 |
127.9 |
| C6 |
C1 |
C |
H2A |
9.5 |
149.8 |
| C6 |
C1 |
C |
H1 |
129.5 |
29.8 |
| C6 |
C1 |
C2 |
H2 |
180.1 |
180.2 |
| C2 |
C1 |
C |
H2A |
189.6 |
330.0 |
| C2 |
C1 |
C |
H1 |
309.6 |
210.0 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.1 |
| C1 |
C2 |
C3 |
H3 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
179.9 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
179.9 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.1 |
| H2 |
C2 |
C3 |
H3 |
360.0 |
0.1 |
| C4 |
C3 |
C2 |
H2 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.1 |
| H3 |
C3 |
C2 |
H2 |
360.0 |
0.1 |
| C5 |
C4 |
C3 |
H3 |
179.9 |
180.0 |
| H4 |
C4 |
C3 |
H3 |
359.9 |
359.9 |
| C6 |
C5 |
C4 |
H4 |
180.1 |
179.8 |
| H5 |
C5 |
C4 |
H4 |
0.1 |
0.1 |
| H6 |
C6 |
C5 |
H5 |
359.9 |
0.0 |
| HO3S |
O3S |
S |
O1S |
112.6 |
296.0 |