PDB Chemical Component PMP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PMP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.378	1.319
N1	C6	1.372	1.318
C2	C2A	1.523	1.507
C2	C3	1.394	1.385
C2A	H2A1	1.114	1.089
C2A	H2A2	1.115	1.090
C2A	H2A3	1.115	1.090
C3	O3	1.391	1.359
C3	C4	1.377	1.392
O3	HO3	0.949	0.967
C4	C4A	1.561	1.506
C4	C5	1.399	1.385
C4A	N4A	1.365	1.469
C4A	H4A1	1.115	1.090
C4A	H4A2	1.115	1.091
N4A	HNA1	1.020	1.009
N4A	HNA2	1.020	1.009
C5	C6	1.378	1.382
C5	C5A	1.521	1.506
C6	H6	1.104	1.080
C5A	O4P	1.410	1.428
C5A	H5A1	1.115	1.090
C5A	H5A2	1.115	1.090
O4P	P	1.553	1.609
P	O1P	1.442	1.479
P	O2P	1.555	1.610
P	O3P	1.478	1.609
O2P	HOP2	0.950	0.967
O3P	HOP3	0.950	0.967

Bond Angles for PMP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	120.2	121.8
N1	C2	C2A	118.7	119.7
N1	C2	C3	120.2	120.7
N1	C6	C5	120.2	120.9
N1	C6	H6	119.7	119.6
C2A	C2	C3	121.0	119.7
C2	C2A	H2A1	118.8	109.4
C2	C2A	H2A2	108.9	109.5
C2	C2A	H2A3	108.9	109.5
C2	C3	O3	121.3	120.5
C2	C3	C4	119.7	119.1
H2A1	C2A	H2A2	108.9	109.5
H2A1	C2A	H2A3	108.9	109.4
H2A2	C2A	H2A3	101.1	109.5
O3	C3	C4	119.0	120.4
C3	O3	HO3	121.3	106.8
C3	C4	C4A	119.1	120.8
C3	C4	C5	119.5	118.4
C4A	C4	C5	121.3	120.8
C4	C4A	N4A	116.5	109.5
C4	C4A	H4A1	109.6	109.5
C4	C4A	H4A2	109.6	109.5
C4	C5	C6	120.2	119.2
C4	C5	C5A	120.8	120.4
N4A	C4A	H4A1	109.7	109.5
N4A	C4A	H4A2	109.7	109.5
C4A	N4A	HNA1	116.5	106.8
C4A	N4A	HNA2	109.7	106.6
H4A1	C4A	H4A2	100.5	109.4
HNA1	N4A	HNA2	109.6	106.7
C6	C5	C5A	119.0	120.4
C5	C6	H6	120.2	119.5
C5	C5A	O4P	109.8	109.5
C5	C5A	H5A1	112.1	109.5
C5	C5A	H5A2	112.1	109.5
O4P	C5A	H5A1	112.1	109.5
O4P	C5A	H5A2	112.0	109.4
C5A	O4P	P	118.0	106.9
H5A1	C5A	H5A2	98.4	109.4
O4P	P	O1P	106.6	109.4
O4P	P	O2P	101.4	109.5
O4P	P	O3P	109.6	109.5
O1P	P	O2P	107.3	109.4
O1P	P	O3P	120.4	109.5
O2P	P	O3P	109.8	109.5
P	O2P	HOP2	101.4	106.8
P	O3P	HOP3	109.6	106.8

Torsion Angles for PMP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	C5	359.9	0.0
C2	N1	C6	H6	179.9	180.0
C2A	C2	N1	C3	179.6	179.6
N1	C2	C2A	H2A1	180.0	90.0
N1	C2	C2A	H2A2	305.3	210.0
N1	C2	C2A	H2A3	54.7	330.1
N1	C2	C3	O3	181.3	180.0
N1	C2	C3	C4	359.8	359.4
C6	N1	C2	C2A	180.1	179.9
C6	N1	C2	C3	0.5	0.3
C4	C5	C6	N1	359.4	360.0
N1	C6	C5	C5A	175.6	179.9
C5	C6	N1	H6	180.0	180.0
C2A	C2	N1	C6	180.1	179.9
N1	C2	C2A	C3	180.4	180.4
C2A	C2	C3	O3	1.7	0.4
C2A	C2	C3	C4	180.2	179.8
H2A1	C2A	C2	H2A2	234.7	240.0
H2A1	C2A	C2	H2A3	125.3	119.9
H2A2	C2A	C2	H2A3	250.6	239.9
C3	C2	N1	C6	0.5	0.3
N1	C2	C3	C2A	179.6	179.6
C3	C2	C2A	H2A1	359.6	269.6
C3	C2	C2A	H2A2	124.9	29.6
C3	C2	C2A	H2A3	234.3	149.7
O3	C3	C2	C4	181.5	180.6
C2	C3	O3	HO3	180.0	269.4
C2	C3	C4	C4A	177.0	180.3
C2	C3	C4	C5	359.6	0.6
H2A1	C2A	C2	C3	359.6	269.6
C2	C2A	H2A1	H2A2	125.3	120.0
C2	C2A	H2A1	H2A3	234.7	240.1
H2A2	C2A	H2A1	H2A3	109.4	120.1
H2A2	C2A	C2	C3	124.9	29.6
C2	C2A	H2A2	H2A1	229.2	240.0
C2	C2A	H2A2	H2A3	114.5	120.0
H2A1	C2A	H2A2	H2A3	245.4	240.0
H2A3	C2A	C2	C3	234.3	149.7
C2	C2A	H2A3	H2A1	130.9	119.9
C2	C2A	H2A3	H2A2	245.4	240.0
H2A1	C2A	H2A3	H2A2	114.6	120.1
C2	C3	O3	C4	178.5	179.4
O3	C3	C4	C4A	355.5	359.7
O3	C3	C4	C5	178.1	180.0
C2	C3	C4	O3	181.4	180.6
C4	C3	O3	HO3	1.5	90.0
C4A	C4	C3	C5	177.4	179.7
C3	C4	C4A	N4A	109.7	270.3
C3	C4	C4A	H4A1	234.9	30.3
C3	C4	C4A	H4A2	344.4	150.3
C3	C4	C5	C6	0.9	359.7
C3	C4	C5	C5A	184.8	179.7
HO3	O3	C3	C4	1.5	90.0
C3	C4	C4A	C5	182.6	180.3
C4A	C4	C5	C6	183.5	180.0
C4A	C4	C5	C5A	7.4	0.1
N4A	C4A	C4	H4A1	234.8	240.0
N4A	C4A	C4	H4A2	125.3	120.0
C4	C4A	N4A	HNA1	180.0	180.0
C4	C4A	N4A	HNA2	54.7	293.8
H4A1	C4A	C4	H4A2	250.5	240.0
N1	C6	C5	C4	359.4	360.0
C3	C4	C5	C4A	177.4	179.7
C5	C4	C4A	N4A	287.0	90.0
C5	C4	C4A	H4A1	52.3	210.0
C5	C4	C4A	H4A2	161.7	330.0
C6	C5	C4	C5A	176.1	179.9
C4	C5	C6	H6	179.4	180.0
C4	C5	C5A	O4P	267.6	180.0
C4	C5	C5A	H5A1	32.9	300.0
C4	C5	C5A	H5A2	142.4	59.9
N4A	C4A	C4	C5	287.0	90.0
C4	C4A	N4A	H4A1	125.2	120.0
C4	C4A	N4A	H4A2	234.7	240.0
H4A1	C4A	N4A	H4A2	109.5	120.0
HNA1	N4A	C4A	HNA2	125.2	246.2
H4A1	C4A	C4	C5	52.3	210.0
C4	C4A	H4A1	N4A	230.9	239.9
C4	C4A	H4A1	H4A2	115.4	120.0
N4A	C4A	H4A1	H4A2	244.5	240.0
H4A1	C4A	N4A	HNA1	54.8	60.0
H4A1	C4A	N4A	HNA2	289.5	173.8
H4A2	C4A	C4	C5	161.7	330.0
C4	C4A	H4A2	N4A	129.2	120.1
C4	C4A	H4A2	H4A1	244.6	240.0
N4A	C4A	H4A2	H4A1	115.5	120.0
H4A2	C4A	N4A	HNA1	305.2	300.1
H4A2	C4A	N4A	HNA2	180.0	53.8
HNA1	N4A	C4A	H4A1	54.8	60.0
HNA1	N4A	C4A	H4A2	305.2	300.1
C4A	N4A	HNA1	HNA2	234.8	113.7
HNA2	N4A	C4A	H4A1	289.5	173.8
HNA2	N4A	C4A	H4A2	180.0	53.8
C4A	N4A	HNA2	HNA1	129.1	246.2
N1	C6	C5	H6	180.0	180.0
C4	C5	C6	C5A	183.8	180.1
C6	C5	C5A	O4P	91.5	0.0
C6	C5	C5A	H5A1	216.8	120.0
C6	C5	C5A	H5A2	326.3	240.0
C4	C5	C5A	C6	176.1	179.9
C5A	C5	C6	H6	355.6	360.0
O4P	C5A	C5	H5A1	234.7	240.0
O4P	C5A	C5	H5A2	125.2	120.0
C5	C5A	O4P	P	150.0	179.9
H5A1	C5A	C5	H5A2	250.5	240.0
N1	C6	H6	C5	180.0	180.0
H6	C6	C5	C5A	355.6	360.0
C5	C5A	O4P	H5A1	125.3	120.0
C5	C5A	O4P	H5A2	234.8	239.9
H5A1	C5A	O4P	H5A2	109.5	119.9
C5A	O4P	P	O1P	193.4	60.1
C5A	O4P	P	O2P	81.3	180.0
C5A	O4P	P	O3P	325.3	300.1
C5	C5A	H5A1	O4P	236.0	240.0
C5	C5A	H5A1	H5A2	118.0	120.0
O4P	C5A	H5A1	H5A2	242.0	240.1
H5A1	C5A	O4P	P	24.8	59.9
C5	C5A	H5A2	O4P	124.0	120.1
C5	C5A	H5A2	H5A1	242.0	240.0
O4P	C5A	H5A2	H5A1	118.0	119.9
H5A2	C5A	O4P	P	275.3	300.0
P	O4P	C5A	H5A1	24.8	59.9
P	O4P	C5A	H5A2	275.3	300.0
O1P	P	O4P	O2P	112.2	240.1
O1P	P	O4P	O3P	228.2	120.0
O2P	P	O4P	O3P	116.0	240.0
O4P	P	O2P	HOP2	180.0	180.1
O4P	P	O3P	HOP3	180.0	300.0
O4P	P	O1P	O2P	252.0	120.0
O4P	P	O1P	O3P	125.5	240.0
O2P	P	O1P	O3P	233.5	120.0
O1P	P	O2P	HOP2	68.4	300.0
O1P	P	O3P	HOP3	304.1	180.0
O4P	P	O2P	O1P	111.6	240.1
O4P	P	O2P	O3P	244.1	120.1
O1P	P	O2P	O3P	132.5	240.0
O2P	P	O3P	HOP3	69.4	60.0
O4P	P	O3P	O1P	235.9	120.0
O4P	P	O3P	O2P	110.6	240.0
O1P	P	O3P	O2P	234.7	120.0
O3P	P	O2P	HOP2	295.8	60.0
HOP2	O2P	P	O3P	295.8	60.0