PDB Chemical Component PMM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PMM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N5 |
C6 |
1.302 |
1.317 |
| N5 |
C4A |
1.413 |
1.326 |
| C6 |
C7 |
1.502 |
1.391 |
| C6 |
C9 |
1.477 |
1.506 |
| C7 |
N8 |
1.450 |
1.317 |
| C7 |
H7 |
1.103 |
1.080 |
| N8 |
C8A |
1.364 |
1.334 |
| N1 |
C2 |
1.385 |
1.310 |
| N1 |
C8A |
1.377 |
1.346 |
| C2 |
N2 |
1.364 |
1.371 |
| C2 |
N3 |
1.335 |
1.362 |
| N2 |
HN21 |
1.020 |
0.971 |
| N2 |
HN22 |
1.021 |
0.970 |
| N3 |
C4 |
1.330 |
1.353 |
| N3 |
HN3 |
1.020 |
0.970 |
| C4 |
O4 |
1.352 |
1.217 |
| C4 |
C4A |
1.381 |
1.473 |
| C4A |
C8A |
1.381 |
1.413 |
| C9 |
O10 |
1.434 |
1.429 |
| C9 |
H91 |
1.115 |
1.089 |
| C9 |
H92 |
1.115 |
1.090 |
| O10 |
PA |
1.557 |
1.610 |
| PA |
O1P |
1.486 |
1.480 |
| PA |
O2P |
1.484 |
1.609 |
| PA |
O3P |
1.610 |
1.610 |
| O2P |
HOP2 |
0.950 |
0.967 |
| O3P |
HOP3 |
0.950 |
0.967 |
Bond Angles for PMM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
N5 |
C4A |
121.9 |
119.6 |
| N5 |
C6 |
C7 |
122.4 |
120.5 |
| N5 |
C6 |
C9 |
117.6 |
119.7 |
| N5 |
C4A |
C4 |
122.6 |
121.8 |
| N5 |
C4A |
C8A |
117.0 |
120.2 |
| C7 |
C6 |
C9 |
119.6 |
119.8 |
| C6 |
C7 |
N8 |
114.8 |
120.7 |
| C6 |
C7 |
H7 |
124.2 |
119.7 |
| C6 |
C9 |
O10 |
98.4 |
109.5 |
| C6 |
C9 |
H91 |
116.5 |
109.5 |
| C6 |
C9 |
H92 |
116.5 |
109.5 |
| N8 |
C7 |
H7 |
121.0 |
119.6 |
| C7 |
N8 |
C8A |
118.3 |
119.6 |
| N8 |
C8A |
N1 |
117.1 |
121.5 |
| N8 |
C8A |
C4A |
125.4 |
119.4 |
| C2 |
N1 |
C8A |
119.3 |
121.7 |
| N1 |
C2 |
N2 |
113.2 |
118.4 |
| N1 |
C2 |
N3 |
122.8 |
123.1 |
| N1 |
C8A |
C4A |
117.5 |
119.2 |
| N2 |
C2 |
N3 |
124.0 |
118.4 |
| C2 |
N2 |
HN21 |
113.3 |
120.0 |
| C2 |
N2 |
HN22 |
110.8 |
120.0 |
| C2 |
N3 |
C4 |
118.2 |
120.4 |
| C2 |
N3 |
HN3 |
121.1 |
119.8 |
| HN21 |
N2 |
HN22 |
110.8 |
120.0 |
| C4 |
N3 |
HN3 |
120.7 |
119.7 |
| N3 |
C4 |
O4 |
119.1 |
121.3 |
| N3 |
C4 |
C4A |
121.9 |
117.5 |
| O4 |
C4 |
C4A |
118.9 |
121.2 |
| C4 |
C4A |
C8A |
120.3 |
118.0 |
| O10 |
C9 |
H91 |
116.4 |
109.4 |
| O10 |
C9 |
H92 |
116.5 |
109.4 |
| C9 |
O10 |
PA |
126.6 |
106.9 |
| H91 |
C9 |
H92 |
93.9 |
109.5 |
| O10 |
PA |
O1P |
112.0 |
109.5 |
| O10 |
PA |
O2P |
106.7 |
109.5 |
| O10 |
PA |
O3P |
105.1 |
109.4 |
| O1P |
PA |
O2P |
114.4 |
109.5 |
| O1P |
PA |
O3P |
108.4 |
109.4 |
| O2P |
PA |
O3P |
109.8 |
109.4 |
| PA |
O2P |
HOP2 |
106.7 |
106.8 |
| PA |
O3P |
HOP3 |
105.1 |
106.8 |
Torsion Angles for PMM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
N5 |
C4A |
C4 |
178.6 |
180.0 |
| C6 |
N5 |
C4A |
C8A |
0.1 |
0.1 |
| C7 |
C6 |
N5 |
C9 |
173.5 |
179.9 |
| N5 |
C6 |
C7 |
N8 |
1.2 |
0.0 |
| N5 |
C6 |
C7 |
H7 |
181.3 |
180.0 |
| N5 |
C6 |
C9 |
O10 |
101.0 |
180.0 |
| N5 |
C6 |
C9 |
H91 |
226.2 |
300.0 |
| N5 |
C6 |
C9 |
H92 |
335.7 |
60.0 |
| C4A |
N5 |
C6 |
C7 |
359.6 |
360.0 |
| C4A |
N5 |
C6 |
C9 |
186.0 |
180.0 |
| N8 |
C8A |
C4A |
N5 |
359.4 |
359.9 |
| N1 |
C8A |
C4A |
N5 |
179.5 |
180.0 |
| N3 |
C4 |
C4A |
N5 |
181.0 |
179.9 |
| O4 |
C4 |
C4A |
N5 |
0.6 |
0.0 |
| C4 |
C4A |
N5 |
C8A |
178.6 |
180.0 |
| C7 |
C6 |
N5 |
C4A |
359.6 |
360.0 |
| N5 |
C6 |
C7 |
C9 |
186.6 |
180.1 |
| C7 |
C6 |
C9 |
O10 |
287.2 |
0.1 |
| C7 |
C6 |
C9 |
H91 |
52.5 |
120.0 |
| C7 |
C6 |
C9 |
H92 |
162.0 |
240.1 |
| N8 |
C7 |
C6 |
H7 |
180.0 |
180.0 |
| C6 |
C7 |
N8 |
C8A |
358.3 |
360.0 |
| C9 |
C6 |
N5 |
C4A |
186.0 |
180.0 |
| N5 |
C6 |
C9 |
C7 |
173.7 |
179.9 |
| C9 |
C6 |
C7 |
N8 |
174.6 |
180.0 |
| C9 |
C6 |
C7 |
H7 |
354.7 |
360.0 |
| O10 |
C9 |
C6 |
H91 |
234.8 |
240.0 |
| O10 |
C9 |
C6 |
H92 |
125.3 |
120.0 |
| C6 |
C9 |
O10 |
PA |
171.2 |
180.0 |
| H91 |
C9 |
C6 |
H92 |
250.5 |
239.9 |
| N8 |
C7 |
C6 |
C9 |
174.6 |
180.0 |
| C6 |
C7 |
N8 |
H7 |
180.0 |
180.0 |
| C7 |
N8 |
C8A |
N1 |
181.4 |
180.0 |
| C7 |
N8 |
C8A |
C4A |
1.5 |
0.1 |
| H7 |
C7 |
C6 |
C9 |
354.7 |
360.0 |
| C6 |
C7 |
H7 |
N8 |
180.0 |
180.0 |
| H7 |
C7 |
N8 |
C8A |
178.3 |
180.0 |
| N5 |
C4A |
C8A |
N8 |
359.4 |
359.9 |
| C8A |
N8 |
C7 |
H7 |
178.3 |
180.0 |
| C2 |
N1 |
C8A |
N8 |
179.5 |
180.0 |
| N1 |
C8A |
N8 |
C4A |
179.9 |
180.0 |
| C4 |
C4A |
C8A |
N8 |
180.8 |
179.9 |
| N8 |
C8A |
N1 |
C2 |
179.5 |
180.0 |
| C2 |
N1 |
C8A |
C4A |
359.4 |
360.0 |
| N2 |
C2 |
N1 |
N3 |
179.5 |
179.7 |
| N1 |
C2 |
N2 |
HN21 |
180.0 |
360.0 |
| N1 |
C2 |
N2 |
HN22 |
54.8 |
179.7 |
| N1 |
C2 |
N3 |
C4 |
0.4 |
359.5 |
| N1 |
C2 |
N3 |
HN3 |
180.5 |
179.8 |
| N5 |
C4A |
C8A |
N1 |
179.5 |
180.0 |
| N8 |
C8A |
N1 |
C4A |
180.1 |
180.0 |
| C8A |
N1 |
C2 |
N2 |
179.5 |
180.0 |
| C8A |
N1 |
C2 |
N3 |
360.0 |
0.3 |
| C4 |
C4A |
C8A |
N1 |
0.9 |
360.0 |
| N2 |
C2 |
N1 |
C8A |
179.5 |
180.0 |
| N1 |
C2 |
N2 |
N3 |
180.5 |
180.3 |
| N2 |
C2 |
N3 |
C4 |
180.9 |
179.8 |
| N2 |
C2 |
N3 |
HN3 |
1.0 |
0.1 |
| HN21 |
N2 |
C2 |
HN22 |
125.2 |
180.2 |
| N3 |
C2 |
N1 |
C8A |
360.0 |
0.3 |
| N1 |
C2 |
N3 |
N2 |
179.5 |
179.7 |
| N3 |
C2 |
N2 |
HN21 |
359.5 |
179.7 |
| N3 |
C2 |
N2 |
HN22 |
234.3 |
359.4 |
| C4 |
N3 |
C2 |
HN3 |
179.9 |
179.7 |
| C2 |
N3 |
C4 |
O4 |
180.2 |
180.2 |
| C2 |
N3 |
C4 |
C4A |
359.9 |
0.4 |
| HN21 |
N2 |
C2 |
N3 |
359.5 |
179.7 |
| C2 |
N2 |
HN21 |
HN22 |
234.8 |
179.8 |
| HN22 |
N2 |
C2 |
N3 |
234.3 |
359.4 |
| C2 |
N2 |
HN22 |
HN21 |
126.6 |
180.2 |
| N5 |
C4A |
C4 |
N3 |
181.0 |
179.9 |
| C2 |
N3 |
C4 |
HN3 |
180.1 |
180.3 |
| O4 |
C4 |
N3 |
C4A |
180.4 |
179.9 |
| N3 |
C4 |
C4A |
C8A |
359.5 |
359.9 |
| C2 |
N3 |
HN3 |
C4 |
179.9 |
179.7 |
| HN3 |
N3 |
C4 |
O4 |
0.2 |
359.9 |
| HN3 |
N3 |
C4 |
C4A |
179.8 |
180.1 |
| N5 |
C4A |
C4 |
O4 |
0.6 |
0.0 |
| O4 |
C4 |
N3 |
HN3 |
0.2 |
359.9 |
| N3 |
C4 |
O4 |
C4A |
179.6 |
180.2 |
| O4 |
C4 |
C4A |
C8A |
179.1 |
180.0 |
| N5 |
C4A |
C4 |
C8A |
181.5 |
180.0 |
| N8 |
C8A |
C4A |
C4 |
180.8 |
179.9 |
| N1 |
C8A |
C4A |
C4 |
0.9 |
360.0 |
| C4A |
C4 |
N3 |
HN3 |
179.8 |
180.1 |
| N3 |
C4 |
C4A |
O4 |
180.4 |
179.9 |
| N5 |
C4A |
C8A |
C4 |
178.6 |
180.0 |
| N8 |
C8A |
C4A |
N1 |
179.9 |
180.0 |
| C6 |
C9 |
O10 |
H91 |
125.3 |
120.0 |
| C6 |
C9 |
O10 |
H92 |
234.7 |
240.0 |
| H91 |
C9 |
O10 |
H92 |
109.4 |
119.9 |
| C9 |
O10 |
PA |
O1P |
206.2 |
59.9 |
| C9 |
O10 |
PA |
O2P |
80.3 |
180.0 |
| C9 |
O10 |
PA |
O3P |
323.6 |
300.0 |
| C6 |
C9 |
H91 |
O10 |
244.5 |
240.0 |
| C6 |
C9 |
H91 |
H92 |
122.3 |
120.1 |
| O10 |
C9 |
H91 |
H92 |
237.8 |
240.1 |
| H91 |
C9 |
O10 |
PA |
45.9 |
60.0 |
| C6 |
C9 |
H92 |
O10 |
115.5 |
120.0 |
| C6 |
C9 |
H92 |
H91 |
237.7 |
239.9 |
| O10 |
C9 |
H92 |
H91 |
122.2 |
119.9 |
| H92 |
C9 |
O10 |
PA |
296.5 |
300.0 |
| PA |
O10 |
C9 |
H91 |
45.9 |
60.0 |
| PA |
O10 |
C9 |
H92 |
296.5 |
300.0 |
| O1P |
PA |
O10 |
O2P |
125.9 |
239.9 |
| O1P |
PA |
O10 |
O3P |
242.5 |
119.9 |
| O2P |
PA |
O10 |
O3P |
116.6 |
240.0 |
| O10 |
PA |
O2P |
HOP2 |
180.0 |
180.0 |
| O10 |
PA |
O3P |
HOP3 |
180.0 |
300.0 |
| O10 |
PA |
O1P |
O2P |
238.4 |
120.1 |
| O10 |
PA |
O1P |
O3P |
115.5 |
240.0 |
| O2P |
PA |
O1P |
O3P |
237.1 |
120.0 |
| O1P |
PA |
O2P |
HOP2 |
55.6 |
300.1 |
| O1P |
PA |
O3P |
HOP3 |
299.9 |
180.0 |
| O10 |
PA |
O2P |
O1P |
124.4 |
239.9 |
| O10 |
PA |
O2P |
O3P |
246.6 |
120.0 |
| O1P |
PA |
O2P |
O3P |
122.1 |
240.0 |
| O2P |
PA |
O3P |
HOP3 |
65.5 |
60.0 |
| O10 |
PA |
O3P |
O1P |
240.1 |
120.0 |
| O10 |
PA |
O3P |
O2P |
114.5 |
240.0 |
| O1P |
PA |
O3P |
O2P |
234.3 |
120.0 |
| O3P |
PA |
O2P |
HOP2 |
293.4 |
60.0 |
| HOP2 |
O2P |
PA |
O3P |
293.4 |
60.0 |