PDB Chemical Component PMJ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PMJ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C6 C1 1.407 1.382
C1 C2 1.403 1.382
C1 H1 1.080 1.080
C2 C3 1.396 1.383
C2 H2 1.080 1.080
C4 C3 1.392 1.382
C3 H3 1.080 1.080
C5 C4 1.399 1.382
C4 C7 1.542 1.507
C6 C5 1.397 1.382
C5 H5 1.080 1.080
C6 H6 1.080 1.080
C7 S8 1.843 1.815
C7 H7 1.100 1.091
C7 H7A 1.100 1.089
O10 S8 1.500 1.421
S8 N11 1.621 1.655
S8 O9 1.483 1.421
C12 N11 1.466 1.465
N11 HN11 1.000 0.971
C13 C12 1.547 1.508
C12 C30 1.545 1.529
C12 H12 1.100 1.090
N15 C13 1.332 1.348
C13 O14 1.237 1.213
C16 N15 1.479 1.465
N15 HN15 1.000 0.970
C17 C16 1.543 1.507
C16 H16 1.100 1.090
C16 H16A 1.100 1.089
N19 C17 1.331 1.349
C17 O18 1.236 1.213
C20 N19 1.506 1.465
N19 HN19 1.000 0.969
C20 C21 1.533 1.507
C20 H20 1.100 1.089
C20 H20A 1.100 1.090
C22 C21 1.391 1.382
C21 C26 1.403 1.384
C22 C23 1.397 1.380
C22 H22 1.080 1.080
C23 C24 1.400 1.395
C23 H23 1.080 1.080
C24 C25 1.406 1.394
C24 C27 1.408 1.481
C26 C25 1.405 1.379
C25 H25 1.080 1.080
C26 H26 1.080 1.080
N28 C27 1.329 1.302
C27 N29 1.325 1.378
N28 HN28 1.000 0.970
N29 HN29 1.000 0.970
N29 HN2A 1.000 0.970
C31 C30 1.528 1.529
C30 H30 1.100 1.091
C30 H30A 1.100 1.090
C31 C32 1.541 1.530
C31 H31 1.100 1.090
C31 H31A 1.100 1.090
C32 N33 1.483 1.466
C32 H32 1.100 1.090
C32 H32A 1.100 1.091
N33 C34 1.335 1.375
N33 HN33 1.000 0.970
C34 N37 1.340 1.303
C34 N35 1.362 1.376
N35 HN35 1.000 0.969
N35 HN3A 1.000 0.970
N37 HN37 1.000 0.970

Bond Angles for PMJ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C6 C1 C2 119.8 120.0
C6 C1 H1 120.1 120.0
C1 C6 H6 120.0 119.9
C2 C1 H1 120.1 120.0
C1 C2 C3 119.7 120.0
C1 C2 H2 120.2 120.0
C3 C2 H2 120.2 120.0
C4 C3 C2 120.6 120.0
C2 C3 H3 119.7 120.0
C4 C3 H3 119.7 120.0
C5 C4 C3 120.0 120.0
C4 C7 H7 109.0 109.5
C4 C7 H7A 109.0 109.5
C6 C5 H5 120.1 120.0
S8 C7 H7 109.0 109.4
S8 C7 H7A 109.0 109.5
C7 S8 N11 112.9 104.4
C7 S8 O9 109.8 110.5
H7 C7 H7A 109.9 109.5
O10 S8 N11 111.2 104.3
O10 S8 O9 113.1 121.0
O9 S8 N11 102.4 104.3
S8 N11 HN11 106.9 120.0
C12 N11 HN11 106.9 120.0
C13 C12 H12 105.2 109.5
C30 C12 H12 112.3 109.5
C12 C30 H30 108.8 109.5
C12 C30 H30A 108.8 109.5
C16 N15 HN15 116.5 120.0
C17 C16 H16 110.0 109.4
C17 C16 H16A 110.0 109.5
H16 C16 H16A 108.9 109.5
C20 N19 HN19 120.0 120.1
C21 C20 H20 108.9 109.5
C21 C20 H20A 108.9 109.4
C20 C21 C26 121.2 119.8
H20 C20 H20A 110.1 109.5
C21 C26 C25 121.3 120.1
C21 C26 H26 119.3 119.9
C22 C23 H23 119.4 120.1
C24 C25 H25 120.5 120.1
C24 C27 N29 121.6 120.0
C26 C25 H25 120.5 120.1
C25 C26 H26 119.3 120.0
N28 C27 N29 117.4 120.0
C27 N29 HN29 120.0 120.0
C27 N29 HN2A 120.0 120.0
HN29 N29 HN2A 120.0 120.0
C31 C30 H30 108.8 109.4
C31 C30 H30A 108.8 109.5
H30 C30 H30A 110.2 109.5
C32 C31 H31 108.9 109.5
C32 C31 H31A 108.9 109.4
C31 C32 N33 105.5 109.5
C31 C32 H32 110.8 109.5
C31 C32 H32A 110.8 109.5
H31 C31 H31A 110.1 109.4
N33 C32 H32 110.8 109.5
N33 C32 H32A 110.8 109.4
C32 N33 C34 126.6 120.0
C32 N33 HN33 116.7 119.9
H32 C32 H32A 108.1 109.5
C34 N33 HN33 116.7 120.0
N33 C34 N37 119.9 120.0
N33 C34 N35 118.6 120.0
N35 C34 N37 121.4 120.0
C34 N37 HN37 112.0 120.0
C34 N35 HN35 120.0 120.0
C34 N35 HN3A 120.0 120.0
HN35 N35 HN3A 120.0 120.1

Torsion Angles for PMJ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 H1 180.0 179.7
C6 C1 C2 C3 0.2 0.3
C6 C1 C2 H2 180.2 180.3
C1 C6 C5 H5 179.3 180.3
C6 C1 C2 H1 180.0 180.3
C2 C1 C6 H6 180.2 180.0
C3 C2 C1 H2 180.0 180.1
C4 C3 C2 C1 359.8 360.0
C1 C2 C3 H3 179.8 179.9
C6 C1 H1 C2 180.0 179.7
H1 C1 C6 H6 0.2 0.3
H1 C1 C2 C3 180.2 180.0
H1 C1 C2 H2 0.2 360.0
C3 C2 C1 H1 180.2 180.0
C1 C2 C3 H2 180.0 179.9
C4 C3 C2 H3 180.0 180.1
C5 C4 C3 C2 359.8 360.0
H2 C2 C1 H1 0.2 360.0
C1 C2 H2 C3 180.0 180.1
C4 C3 C2 H2 179.8 180.0
H2 C2 C3 H3 359.8 360.0
C1 C2 C3 C4 359.8 360.0
C2 C3 C4 H3 180.0 179.9
C3 C4 C7 H7 221.2 209.9
C3 C4 C7 H7A 341.2 330.0
H3 C3 C2 H2 359.8 360.0
C4 C3 H3 C2 180.0 179.9
C5 C4 C3 H3 179.8 180.0
C5 C4 C7 H7 43.0 29.9
C5 C4 C7 H7A 163.0 150.0
S8 C7 C4 H7 240.0 240.1
S8 C7 C4 H7A 120.0 120.0
C4 C7 S8 N11 192.4 175.0
C4 C7 S8 O9 306.0 286.6
H7 C7 C4 H7A 240.0 239.9
C6 C5 C4 C3 0.6 359.7
H5 C5 C4 C3 180.7 180.0
H6 C6 C1 C2 180.2 180.0
H6 C6 C1 H1 0.2 0.3
H6 C6 C5 H5 359.3 359.7
C4 C7 S8 H7 120.0 119.9
C4 C7 S8 H7A 240.0 240.0
H7 C7 S8 H7A 120.0 120.1
O10 S8 C7 N11 237.0 248.3
O10 S8 C7 O9 123.4 136.7
O9 S8 C7 N11 113.6 111.6
C7 S8 N11 HN11 50.1 243.4
C4 C7 H7 H7A 119.4 120.1
S8 C7 H7 H7A 240.5 240.0
H7 C7 S8 N11 72.4 55.1
H7 C7 S8 O9 186.0 166.7
C4 C7 H7A H7 240.6 240.0
S8 C7 H7A H7 119.5 120.0
H7A C7 S8 N11 312.3 295.0
H7A C7 S8 O9 66.0 46.6
O10 S8 C7 H7 309.4 303.4
O10 S8 C7 H7A 189.4 183.4
C7 S8 O10 N11 124.1 111.7
C7 S8 O10 O9 238.7 228.6
O9 S8 O10 N11 245.4 243.2
O10 S8 N11 HN11 171.0 359.4
N11 S8 C7 H7 72.4 55.1
N11 S8 C7 H7A 312.3 295.0
C7 S8 N11 O9 118.0 116.0
O10 S8 N11 O9 238.9 232.1
C12 N11 S8 HN11 240.0 180.0
O9 S8 C7 H7 186.0 166.7
O9 S8 C7 H7A 66.0 46.6
C7 S8 O9 N11 239.8 248.3
O10 S8 O9 N11 119.8 116.8
O9 S8 N11 HN11 292.0 127.3
S8 N11 C12 HN11 120.0 180.0
C13 C12 N11 HN11 313.8 276.0
C30 C12 C13 H12 122.2 120.1
C13 C12 C30 H30 64.0 305.3
C13 C12 C30 H30A 184.0 65.4
C30 C12 N11 HN11 74.0 36.0
C13 C12 C30 H12 242.0 239.9
C31 C30 C12 H30 240.0 240.0
C31 C30 C12 H30A 120.0 120.0
H30 C30 C12 H30A 240.0 240.0
H12 C12 N11 HN11 195.9 156.0
H12 C12 C30 H30 182.0 65.4
H12 C12 C30 H30A 302.0 185.4
N15 C13 C12 H12 341.7 300.0
O14 C13 C12 H12 158.5 120.0
C17 C16 N15 HN15 119.0 0.0
H16 C16 C17 H16A 120.0 120.1
H16 C16 N15 HN15 239.0 119.9
C17 C16 H16 H16A 239.4 239.9
H16A C16 N15 HN15 358.9 240.0
C17 C16 H16A H16 120.6 120.0
N19 C17 C16 H16 11.5 60.1
N19 C17 C16 H16A 251.6 300.0
O18 C17 C16 H16 194.4 240.0
O18 C17 C16 H16A 74.5 119.9
C21 C20 N19 HN19 284.3 359.9
H20 C20 C21 H20A 120.0 119.9
C20 C21 C26 C25 179.5 179.7
C20 C21 C26 H26 359.5 360.0
H20 C20 N19 HN19 44.2 119.9
C21 C20 H20 H20A 240.7 240.1
H20 C20 C21 C26 182.6 330.0
H20A C20 N19 HN19 164.2 240.0
C21 C20 H20A H20 119.3 119.9
H20A C20 C21 C26 62.6 210.0
C22 C21 C20 H20 3.7 150.3
C22 C21 C20 H20A 243.7 30.3
C22 C21 C26 H26 178.4 179.7
C26 C21 C20 H20 182.6 330.0
C26 C21 C20 H20A 62.6 210.0
C21 C26 C25 H25 181.3 180.3
C25 C26 C21 H26 180.0 179.7
H22 C22 C23 H23 359.4 0.1
C23 C24 C25 H25 179.3 180.0
C26 C25 C24 H25 180.0 179.7
C24 C25 C26 H26 181.4 180.3
C27 C24 C25 H25 0.3 0.0
N28 C27 C24 N29 174.8 180.0
C24 C27 N29 HN29 175.0 360.0
C24 C27 N29 HN2A 355.0 180.0
C21 C26 C25 H26 180.0 180.3
C24 C25 C26 H25 180.0 180.3
H25 C25 C26 H26 1.3 0.0
C21 C26 H26 C25 180.0 179.7
H26 C26 C25 H25 1.3 0.0
C24 C27 N28 N29 185.0 180.0
N28 C27 N29 HN29 360.0 180.0
N28 C27 N29 HN2A 180.0 360.0
HN29 N29 C27 HN2A 180.0 180.0
HN28 N28 C27 N29 0.0 0.0
C27 N29 HN29 HN2A 180.0 180.0
C27 N29 HN2A HN29 180.0 180.0
C31 C30 C12 H12 62.0 305.5
C12 C30 C31 H30 120.0 120.0
C12 C30 C31 H30A 240.0 240.0
H30 C30 C31 H30A 120.0 120.0
H30 C30 C12 H12 182.0 65.4
C12 C30 H30 H30A 119.2 120.0
C31 C30 H30 H30A 240.8 240.0
H30A C30 C12 H12 302.0 185.4
C12 C30 H30A H30 240.8 240.0
C31 C30 H30A H30 119.2 120.0
C32 C31 C30 H30 58.7 64.5
C32 C31 C30 H30A 298.6 304.5
H31 C31 C32 H31A 120.0 119.9
N33 C32 C31 H32 240.0 239.9
N33 C32 C31 H32A 120.0 120.0
C31 C32 N33 C34 180.9 180.0
C31 C32 N33 HN33 0.9 0.1
H32 C32 C31 H32A 240.0 240.0
H31 C31 C30 H30 178.6 184.5
H31 C31 C30 H30A 58.6 64.5
C32 C31 H31 H31A 240.8 240.1
H31 C31 C32 N33 303.5 59.9
H31 C31 C32 H32 63.5 180.0
H31 C31 C32 H32A 183.5 300.0
H31A C31 C30 H30 298.7 304.5
H31A C31 C30 H30A 178.7 184.5
C32 C31 H31A H31 119.3 120.0
H31A C31 C32 N33 183.5 300.0
H31A C31 C32 H32 303.5 60.1
H31A C31 C32 H32A 63.5 180.0
N33 C32 C31 H31 303.5 59.9
N33 C32 C31 H31A 183.5 300.0
C31 C32 N33 H32 120.0 120.0
C31 C32 N33 H32A 240.0 240.0
H32 C32 N33 H32A 120.0 120.0
C34 N33 C32 HN33 180.0 179.9
C32 N33 C34 N37 1.8 180.0
C32 N33 C34 N35 179.9 0.1
H32 C32 C31 H31 63.5 180.0
H32 C32 C31 H31A 303.5 60.1
C31 C32 H32 N33 243.2 239.9
C31 C32 H32 H32A 121.6 120.0
N33 C32 H32 H32A 238.4 240.1
H32 C32 N33 C34 60.9 59.9
H32 C32 N33 HN33 240.9 240.0
H32A C32 C31 H31 183.5 300.0
H32A C32 C31 H31A 63.5 180.0
C31 C32 H32A N33 116.8 120.0
C31 C32 H32A H32 238.4 240.0
N33 C32 H32A H32 121.6 120.0
H32A C32 N33 C34 300.9 300.0
H32A C32 N33 HN33 120.9 120.0
C34 N33 C32 H32 60.9 59.9
C34 N33 C32 H32A 300.9 300.0
C32 N33 C34 HN33 180.0 180.1
N35 C34 N33 N37 178.1 180.0
N33 C34 N37 HN37 178.0 180.1
N33 C34 N35 HN35 182.0 359.9
N33 C34 N35 HN3A 2.0 180.0
HN33 N33 C32 H32 240.9 240.0
HN33 N33 C32 H32A 120.9 120.0
C32 N33 HN33 C34 180.0 179.9
HN33 N33 C34 N37 181.9 360.0
HN33 N33 C34 N35 359.9 180.0
N37 C34 N33 HN33 181.9 360.0
N33 C34 N37 N35 178.0 180.0
N37 C34 N35 HN35 0.0 180.0
N37 C34 N35 HN3A 180.0 360.0
N35 C34 N33 HN33 359.9 180.0
N33 C34 N35 N37 182.0 180.0
N35 C34 N37 HN37 360.0 0.1
HN35 N35 C34 HN3A 180.0 180.0
HN35 N35 C34 N37 0.0 180.0
C34 N35 HN35 HN3A 180.0 180.0
HN3A N35 C34 N37 180.0 360.0
C34 N35 HN3A HN35 180.0 180.0