PDB Chemical Component PMH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PMH

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.361	1.318
N1	C6	1.373	1.319
C2	C2A	1.511	1.507
C2	C3	1.444	1.386
C2A	H2A1	1.115	1.090
C2A	H2A2	1.115	1.089
C2A	H2A3	1.115	1.089
C3	O3	1.347	1.358
C3	C4	1.419	1.392
O3	HO3	0.950	0.967
C4	C4A	1.504	1.507
C4	C5	1.472	1.384
C4A	N	1.484	1.464
C4A	H4A1	1.115	1.089
C4A	H4A2	1.115	1.089
C5	C6	1.425	1.382
C5	C5A	1.510	1.506
C6	H6	1.103	1.080
C5A	O4P	1.431	1.429
C5A	H5A1	1.115	1.090
C5A	H5A2	1.115	1.090
O4P	P	1.591	1.609
P	O1P	1.778	1.480
P	O2P	1.758	1.609
P	O3P	1.761	1.610
O2P	H2P	0.950	0.968
O3P	H3P	0.950	0.968
N	CA	1.388	1.407
N	HN	1.020	0.970
CA	C	1.405	1.423
CA	CB	1.369	1.356
C	O	1.334	1.357
C	ND	1.301	1.306
O	HO	0.950	0.967
ND	OG	1.380	1.208
OG	CB	1.354	1.345
CB	HB	1.103	1.080

Bond Angles for PMH

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	123.4	121.8
N1	C2	C2A	119.7	119.7
N1	C2	C3	119.4	120.7
N1	C6	C5	120.3	120.8
N1	C6	H6	118.0	119.6
C2A	C2	C3	120.9	119.7
C2	C2A	H2A1	108.5	109.5
C2	C2A	H2A2	119.7	109.5
C2	C2A	H2A3	108.5	109.4
C2	C3	O3	119.5	120.5
C2	C3	C4	120.0	119.1
H2A1	C2A	H2A2	108.6	109.4
H2A1	C2A	H2A3	101.5	109.4
H2A2	C2A	H2A3	108.5	109.5
O3	C3	C4	120.5	120.4
C3	O3	HO3	119.5	106.8
C3	C4	C4A	124.4	120.8
C3	C4	C5	118.5	118.3
C4A	C4	C5	117.1	120.8
C4	C4A	N	110.2	109.5
C4	C4A	H4A1	111.9	109.5
C4	C4A	H4A2	112.0	109.5
C4	C5	C6	118.4	119.3
C4	C5	C5A	123.0	120.4
N	C4A	H4A1	112.0	109.4
N	C4A	H4A2	111.9	109.5
C4A	N	CA	118.8	120.0
C4A	N	HN	108.9	120.0
H4A1	C4A	H4A2	98.5	109.5
C6	C5	C5A	118.6	120.3
C5	C6	H6	121.7	119.6
C5	C5A	O4P	106.9	109.5
C5	C5A	H5A1	113.2	109.5
C5	C5A	H5A2	113.2	109.5
O4P	C5A	H5A1	113.2	109.5
O4P	C5A	H5A2	113.2	109.5
C5A	O4P	P	114.4	106.8
H5A1	C5A	H5A2	97.3	109.3
O4P	P	O1P	109.7	109.5
O4P	P	O2P	108.7	109.5
O4P	P	O3P	110.6	109.5
O1P	P	O2P	110.3	109.4
O1P	P	O3P	108.8	109.4
O2P	P	O3P	108.8	109.5
P	O2P	H2P	108.7	106.8
P	O3P	H3P	110.6	106.8
CA	N	HN	108.8	119.9
N	CA	C	127.2	128.1
N	CA	CB	125.7	128.1
C	CA	CB	106.6	103.9
CA	C	O	124.5	126.9
CA	C	ND	109.1	106.3
CA	CB	OG	107.1	106.5
CA	CB	HB	126.9	126.8
O	C	ND	126.1	126.9
C	O	HO	124.6	106.8
C	ND	OG	108.0	111.6
ND	OG	CB	109.0	111.7
OG	CB	HB	126.0	126.7

Torsion Angles for PMH

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	C5	359.9	360.0
C2	N1	C6	H6	179.9	180.0
C2A	C2	N1	C3	180.1	179.7
N1	C2	C2A	H2A1	54.8	330.0
N1	C2	C2A	H2A2	180.0	90.0
N1	C2	C2A	H2A3	305.3	210.1
N1	C2	C3	O3	180.1	180.0
N1	C2	C3	C4	359.9	359.4
C6	N1	C2	C2A	180.2	180.0
C6	N1	C2	C3	0.1	0.3
C4	C5	C6	N1	0.0	0.0
N1	C6	C5	C5A	179.1	180.0
C5	C6	N1	H6	180.0	180.0
C2A	C2	N1	C6	180.2	180.0
N1	C2	C2A	C3	179.9	180.3
C2A	C2	C3	O3	0.0	0.3
C2A	C2	C3	C4	179.8	179.7
H2A1	C2A	C2	H2A2	234.7	240.0
H2A1	C2A	C2	H2A3	109.5	119.9
H2A2	C2A	C2	H2A3	234.8	239.9
C3	C2	N1	C6	0.1	0.3
N1	C2	C3	C2A	180.1	179.7
C3	C2	C2A	H2A1	234.8	149.7
C3	C2	C2A	H2A2	0.1	269.7
C3	C2	C2A	H2A3	125.3	29.7
O3	C3	C2	C4	180.2	180.6
C2	C3	O3	HO3	180.0	269.4
C2	C3	C4	C4A	180.1	180.3
C2	C3	C4	C5	0.0	0.6
H2A1	C2A	C2	C3	234.8	149.7
C2	C2A	H2A1	H2A2	131.6	120.1
C2	C2A	H2A1	H2A3	245.8	240.1
H2A2	C2A	H2A1	H2A3	114.2	120.0
H2A2	C2A	C2	C3	0.1	269.7
C2	C2A	H2A2	H2A1	234.8	240.0
C2	C2A	H2A2	H2A3	125.3	120.0
H2A1	C2A	H2A2	H2A3	250.5	240.1
H2A3	C2A	C2	C3	125.3	29.7
C2	C2A	H2A3	H2A1	114.2	120.0
C2	C2A	H2A3	H2A2	228.4	239.9
H2A1	C2A	H2A3	H2A2	114.2	120.0
C2	C3	O3	C4	179.8	179.4
O3	C3	C4	C4A	359.8	359.7
O3	C3	C4	C5	179.8	180.0
C2	C3	C4	O3	180.2	180.6
C4	C3	O3	HO3	0.2	90.0
C4A	C4	C3	C5	180.0	179.7
C3	C4	C4A	N	81.9	270.3
C3	C4	C4A	H4A1	316.6	30.2
C3	C4	C4A	H4A2	207.1	150.2
C3	C4	C5	C6	0.0	359.7
C3	C4	C5	C5A	181.0	179.7
HO3	O3	C3	C4	0.2	90.0
C3	C4	C4A	C5	180.0	180.3
C4A	C4	C5	C6	180.0	179.9
C4A	C4	C5	C5A	0.9	360.0
N	C4A	C4	H4A1	125.3	240.1
N	C4A	C4	H4A2	234.8	120.0
C4	C4A	N	CA	208.4	180.0
C4	C4A	N	HN	83.2	360.0
H4A1	C4A	C4	H4A2	109.5	240.0
N1	C6	C5	C4	0.0	0.0
C3	C4	C5	C4A	180.0	179.7
C5	C4	C4A	N	261.9	90.0
C5	C4	C4A	H4A1	136.7	210.0
C5	C4	C4A	H4A2	27.2	330.0
C6	C5	C4	C5A	179.1	180.0
C4	C5	C6	H6	180.0	180.0
C4	C5	C5A	O4P	67.8	180.0
C4	C5	C5A	H5A1	302.6	300.1
C4	C5	C5A	H5A2	193.1	59.9
N	C4A	C4	C5	261.9	90.0
C4	C4A	N	H4A1	234.7	120.0
C4	C4A	N	H4A2	125.2	240.0
H4A1	C4A	N	H4A2	250.5	120.0
CA	N	C4A	HN	125.3	180.1
C4A	N	CA	C	73.1	179.7
C4A	N	CA	CB	243.6	360.0
H4A1	C4A	C4	C5	136.7	210.0
C4	C4A	H4A1	N	124.3	240.0
C4	C4A	H4A1	H4A2	242.1	120.0
N	C4A	H4A1	H4A2	117.8	240.0
H4A1	C4A	N	CA	333.7	60.0
H4A1	C4A	N	HN	208.4	240.0
H4A2	C4A	C4	C5	27.2	330.0
C4	C4A	H4A2	N	235.7	120.0
C4	C4A	H4A2	H4A1	117.9	240.0
N	C4A	H4A2	H4A1	242.1	120.0
H4A2	C4A	N	CA	83.2	300.0
H4A2	C4A	N	HN	317.9	120.0
N1	C6	C5	H6	180.0	180.0
C4	C5	C6	C5A	180.9	180.0
C6	C5	C5A	O4P	248.8	0.0
C6	C5	C5A	H5A1	123.5	120.1
C6	C5	C5A	H5A2	14.0	240.0
C4	C5	C5A	C6	179.1	180.0
C5A	C5	C6	H6	359.1	360.0
O4P	C5A	C5	H5A1	125.2	239.9
O4P	C5A	C5	H5A2	234.8	120.0
C5	C5A	O4P	P	182.0	180.0
H5A1	C5A	C5	H5A2	109.5	240.2
N1	C6	H6	C5	180.0	180.0
H6	C6	C5	C5A	359.1	360.0
C5	C5A	O4P	H5A1	234.7	120.1
C5	C5A	O4P	H5A2	125.3	239.9
H5A1	C5A	O4P	H5A2	250.5	119.8
C5A	O4P	P	O1P	65.0	60.0
C5A	O4P	P	O2P	185.7	180.0
C5A	O4P	P	O3P	305.0	300.1
C5	C5A	H5A1	O4P	121.8	239.9
C5	C5A	H5A1	H5A2	240.9	119.9
O4P	C5A	H5A1	H5A2	119.1	240.1
H5A1	C5A	O4P	P	307.2	59.9
C5	C5A	H5A2	O4P	238.2	120.1
C5	C5A	H5A2	H5A1	119.1	240.1
O4P	C5A	H5A2	H5A1	240.9	120.0
H5A2	C5A	O4P	P	56.7	300.0
P	O4P	C5A	H5A1	307.2	59.9
P	O4P	C5A	H5A2	56.7	300.0
O1P	P	O4P	O2P	239.3	240.1
O1P	P	O4P	O3P	120.0	120.0
O2P	P	O4P	O3P	240.7	239.9
O4P	P	O2P	H2P	180.0	180.0
O4P	P	O3P	H3P	180.0	300.0
O4P	P	O1P	O2P	119.7	120.0
O4P	P	O1P	O3P	238.9	240.0
O2P	P	O1P	O3P	119.2	120.0
O1P	P	O2P	H2P	300.3	299.9
O1P	P	O3P	H3P	59.5	180.0
O4P	P	O2P	O1P	239.7	240.0
O4P	P	O2P	O3P	120.5	120.1
O1P	P	O2P	O3P	240.7	240.1
O2P	P	O3P	H3P	299.3	60.0
O4P	P	O3P	O1P	120.5	120.0
O4P	P	O3P	O2P	240.7	239.9
O1P	P	O3P	O2P	120.2	119.9
O3P	P	O2P	H2P	59.5	59.9
H2P	O2P	P	O3P	59.5	59.9
CA	N	C4A	H4A1	333.7	60.0
CA	N	C4A	H4A2	83.2	300.0
C4A	N	CA	HN	234.7	179.9
C	CA	N	CB	189.5	179.7
N	CA	C	O	354.1	0.3
N	CA	C	ND	168.4	179.8
N	CA	CB	OG	189.2	180.0
N	CA	CB	HB	9.2	0.0
HN	N	C4A	H4A1	208.4	240.0
HN	N	C4A	H4A2	317.9	120.0
C4A	N	HN	CA	130.9	180.1
HN	N	CA	C	198.4	359.7
HN	N	CA	CB	8.9	180.1
C	CA	N	HN	198.4	359.7
N	CA	C	CB	172.0	180.3
C	CA	CB	OG	1.3	0.3
C	CA	CB	HB	181.3	180.3
O	C	CA	ND	185.6	180.5
CA	C	O	HO	180.0	269.4
CA	C	ND	OG	4.3	0.5
CB	CA	N	HN	8.9	180.1
N	CA	CB	C	187.9	179.7
CB	CA	C	O	182.1	180.1
CB	CA	C	ND	356.5	359.6
ND	OG	CB	CA	1.2	0.0
OG	CB	CA	HB	180.0	180.0
O	C	CA	CB	182.1	180.1
CA	C	O	ND	173.4	179.4
O	C	ND	OG	178.5	180.0
ND	C	CA	CB	356.5	359.6
CA	C	ND	O	185.8	180.5
ND	C	O	HO	6.6	90.0
C	ND	OG	CB	356.5	359.7
HO	O	C	ND	6.6	90.0
CA	CB	OG	ND	1.2	0.0
ND	OG	CB	HB	181.2	180.0
CA	CB	OG	HB	180.0	180.0
CA	CB	HB	OG	180.0	180.0